Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  45  of  226  ( 27070 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15244048--15244161
52
2.3
50
76
13
117
38
8
1
50
1.44
15244155--15244207
26
2.0
26
85
0
70
39
5
3
50
1.44
15244637--15244778
73
2.0
72
88
4
214
28
19
16
35
1.94
15251888--15251916
15
2.0
15
93
6
51
24
0
6
68
1.13
15253445--15253484
20
2.1
18
86
9
53
60
2
2
35
1.24
15254164--15254221
21
2.8
21
77
10
57
37
1
1
58
1.18
15254196--15254232
15
2.5
15
91
8
58
37
0
0
62
0.96
15254196--15254231
14
2.5
15
86
13
58
36
0
0
63
0.94
15260050--15260074
13
1.9
13
100
0
50
32
8
20
40
1.81
15260662--15260705
22
2.0
21
91
4
70
40
4
13
40
1.65
15260689--15260759
22
3.2
22
63
21
58
38
7
12
42
1.70
15260684--15260777
44
2.1
44
100
0
188
42
6
13
37
1.70
15264956--15265008
19
2.7
19
83
13
65
30
0
3
66
1.10
15264945--15265002
30
1.9
30
89
0
89
34
1
3
60
1.24
15264956--15265061
38
2.7
39
77
11
119
36
1
1
59
1.19
15269114--15269175
29
2.2
28
83
13
74
48
0
4
46
1.23
15277824--15277868
22
2.1
21
88
12
65
26
15
4
53
1.61
15292442--15292504
3
21.0
3
100
0
126
66
0
33
0
0.92
15292443--15292512
6
11.3
7
96
1
68
67
0
32
0
0.91
15302662--15302686
3
8.3
3
100
0
50
68
0
0
32
0.90
15306759--15306805
24
2.0
23
87
4
67
12
36
4
46
1.62
15306760--15306812
24
2.2
24
83
6
63
15
35
1
47
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15306809--15306853
18
2.5
19
75
13
51
22
28
0
48
1.50
15310572--15310751
45
4.0
45
84
4
222
35
27
16
20
1.94
15313468--15313604
40
3.5
40
81
5
163
38
21
18
21
1.93
15317972--15317997
11
2.4
11
100
0
52
53
0
7
38
1.30
15317957--15318048
39
2.4
38
82
10
114
61
0
3
34
1.12
15321290--15321654
43
8.5
43
82
3
416
21
16
31
31
1.95
15322444--15322511
7
9.9
7
74
17
54
52
2
1
42
1.25
15325172--15325228
24
2.4
24
75
0
60
17
35
3
43
1.66
15325204--15325241
17
2.2
18
90
4
60
18
34
2
44
1.64
15336405--15336515
57
1.9
57
81
1
132
48
16
8
27
1.74
15344137--15344234
25
4.0
24
72
7
72
30
19
24
25
1.98
15348613--15348651
19
2.1
19
85
0
51
12
10
23
53
1.69
15348798--15348856
30
2.0
30
86
3
84
20
16
8
54
1.68
15356978--15357130
42
3.6
42
84
3
173
36
23
18
21
1.95
15357107--15357159
26
2.0
26
88
0
79
24
33
22
18
1.97
15357067--15357200
67
2.0
68
83
4
173
28
26
20
24
1.99
15363584--15363625
22
2.0
21
90
4
66
4
9
7
78
1.08
15374078--15374108
2
15.5
2
100
0
62
51
0
0
48
1.00
15375578--15375655
37
2.1
38
92
2
131
29
3
0
66
1.09
15375620--15375680
31
2.0
31
87
6
88
36
1
0
62
1.05
15375585--15375664
37
2.1
38
86
6
110
30
3
0
66
1.09
15378356--15378404
17
2.9
18
82
14
61
65
0
34
0
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15378355--15378399
23
2.0
23
86
8
65
64
0
35
0
0.94
15378560--15378792
21
11.0
21
72
18
119
30
1
13
54
1.47
15378703--15378846
27
5.8
26
84
13
180
31
0
13
54
1.45
15378703--15378822
48
2.5
48
94
1
213
30
0
13
55
1.44
15378782--15378870
8
10.1
8
70
17
52
32
1
16
49
1.54
15378558--15378825
19
14.5
19
69
22
146
30
1
13
54
1.46
15383332--15383368
9
4.1
9
92
0
65
45
13
10
29
1.77
15385178--15385216
19
2.0
20
90
10
62
25
5
0
69
1.09
15385526--15385580
27
2.0
27
83
13
69
40
1
0
58
1.09
15385531--15385609
40
2.0
41
89
2
124
40
6
0
53
1.26
15387553--15388188
316
2.0
316
97
0
1200
37
11
15
36
1.84
15403369--15403410
21
2.0
21
95
0
75
40
19
14
26
1.89
15406720--15406782
31
2.1
31
85
8
85
46
1
7
44
1.42
15416981--15417024
2
21.5
2
86
4
61
47
6
45
0
1.29
15420338--15420371
3
10.7
3
87
12
50
67
2
0
29
1.05
15420512--15420560
26
1.9
25
87
4
71
55
6
4
34
1.44
15427533--15427600
30
2.2
31
82
7
77
48
22
8
20
1.77
15428502--15428557
3
18.7
3
100
0
112
0
33
0
66
0.92
15450557--15450597
15
2.7
16
77
11
50
29
17
4
48
1.67
15454127--15454192
34
1.9
34
100
0
132
18
15
18
48
1.81
15457230--15457282
27
2.0
27
100
0
106
22
11
18
47
1.81
15471657--15471810
42
3.7
42
83
1
193
15
20
18
45
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15471640--15471829
21
9.1
21
71
3
107
15
21
18
43
1.87
15477039--15477067
12
2.3
13
94
5
51
68
0
0
31
0.89
15481452--15481512
31
2.0
31
83
6
79
47
6
8
37
1.59
15483041--15483082
22
1.9
22
85
9
59
30
2
0
66
1.04
15483532--15483562
16
1.9
16
93
0
53
38
12
0
48
1.42
15483685--15483718
16
2.1
16
94
0
59
32
14
14
38
1.87
15491479--15491536
22
2.6
23
83
8
75
44
18
24
12
1.84
15491682--15491716
16
2.1
17
89
5
54
37
25
2
34
1.71
15492529--15492580
5
10.4
5
100
0
104
59
0
0
40
0.97
15493079--15493125
22
2.1
22
88
0
67
46
17
17
19
1.84
15494545--15494586
5
8.6
5
84
5
59
57
0
0
42
0.99
15494541--15494584
24
1.9
22
90
9
70
56
0
0
43
0.99
15497895--15497933
18
2.2
18
86
9
53
41
5
0
53
1.23
15500811--15500907
35
2.8
34
90
1
140
20
50
9
19
1.75
15502216--15502284
3
24.0
3
78
8
54
34
8
0
56
1.30
15502226--15502276
15
3.5
15
84
10
70
35
11
0
52
1.38
15504492--15504535
19
2.3
20
84
7
56
27
20
11
40
1.86
15508716--15508910
97
2.0
94
90
2
300
31
17
22
28
1.96
15508905--15508977
35
2.0
35
87
10
103
28
19
26
26
1.98
15508817--15509065
123
2.0
123
87
6
360
29
19
23
28
1.98
15508722--15509162
220
2.0
217
88
8
651
29
19
22
28
1.98
15508943--15509411
97
5.0
95
93
3
774
29
19
22
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15508943--15509411
192
2.5
192
93
3
796
29
19
22
28
1.98
15509251--15509409
45
3.4
45
65
17
115
29
17
23
28
1.97
15509216--15510007
231
3.4
231
97
0
1485
28
19
22
29
1.98
15509481--15509640
45
3.4
45
65
17
108
28
17
23
30
1.97
15509447--15509642
97
2.0
96
92
1
322
29
18
21
29
1.97
15509678--15509873
97
2.0
97
95
1
351
29
18
22
29
1.97
15509773--15510017
134
1.8
136
94
1
440
28
18
22
30
1.98
15509988--15510460
44
10.9
44
66
3
186
28
20
24
26
1.99
15509915--15510506
130
4.5
130
94
0
986
28
20
24
26
1.99
15510074--15510506
43
10.0
43
64
7
158
27
20
25
26
1.99
15510622--15510987
50
7.4
50
65
6
199
29
24
21
23
1.99
15510585--15510985
99
4.0
99
86
4
529
29
23
22
23
1.99
15512853--15512921
3
24.0
3
78
8
54
34
8
0
56
1.30
15512863--15512913
15
3.5
15
84
10
70
35
11
0
52
1.38
15515484--15515515
7
4.4
7
96
4
55
68
12
0
18
1.20
15521178--15521239
30
2.0
32
81
9
76
48
14
0
37
1.44
15528151--15528188
9
4.0
10
86
10
53
60
2
0
36
1.11
15528174--15528240
29
2.4
28
76
14
75
61
2
1
34
1.20
15528382--15528478
9
10.4
9
70
14
56
34
1
1
63
1.08
15530910--15530975
13
4.8
13
76
16
53
60
0
1
37
1.06
15533195--15533287
36
2.7
34
83
5
89
25
37
32
4
1.76
15533223--15533287
18
3.6
18
95
0
112
29
33
32
4
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15533984--15534025
21
2.0
22
85
4
59
59
7
7
26
1.50
15536032--15536084
3
17.7
3
100
0
106
67
0
0
32
0.91
15539462--15539487
12
2.2
12
100
0
52
34
7
15
42
1.75
15539474--15539521
19
2.4
19
86
6
69
37
10
12
39
1.77
15539479--15539544
23
3.0
23
78
12
68
37
7
15
39
1.75
15540009--15540054
17
2.6
17
86
3
65
41
10
0
47
1.38
15540129--15540176
25
2.0
25
84
12
64
31
8
0
60
1.26
15540217--15540273
30
1.9
30
89
7
89
33
3
3
59
1.31
15542325--15542646
112
2.8
112
81
6
373
22
3
16
58
1.52
15545670--15545731
32
1.9
32
86
0
88
46
6
6
40
1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226