genome.fa.s24.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  111  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34583285--34583346	31	2.1	30	82	11	74	46	20	4	27	1.71
34587957--34588056	11	9.9	11	68	23	51	58	0	2	40	1.10
34587925--34588074	79	1.9	83	87	5	227	60	0	1	37	1.10
34591280--34591662	27	14.2	27	81	2	396	19	17	21	41	1.90
34591694--34591749	20	2.9	19	78	7	51	25	30	23	21	1.99
34592741--34592820	25	3.2	24	79	10	81	23	18	25	32	1.97
34595453--34595477	4	6.2	4	100	0	50	24	0	0	76	0.80
34596426--34596511	6	14.0	6	69	13	59	72	3	5	18	1.20
34596474--34596511	18	2.2	17	95	4	67	81	2	0	15	0.80
34596726--34596766	21	2.0	21	85	9	57	4	12	53	29	1.58
34607026--34607053	12	2.3	12	100	0	56	7	28	39	25	1.82
34608612--34608737	43	3.0	40	70	22	105	25	17	25	31	1.97
34610549--34610895	50	6.8	50	85	4	433	21	29	22	26	1.99
34612385--34612726	23	14.6	23	84	3	423	28	11	18	41	1.85
34612385--34612726	47	7.3	46	86	3	423	28	11	18	41	1.85
34612394--34612726	70	4.7	70	85	3	445	27	11	18	41	1.85
34617538--34617575	18	2.1	18	85	9	51	28	21	2	47	1.64
34628751--34628783	12	2.7	12	95	4	57	57	6	0	36	1.23
34630085--34630118	12	2.6	13	86	13	52	20	5	23	50	1.70
34631037--34631130	49	1.9	49	83	10	122	29	4	4	61	1.34
34630991--34631303	137	2.4	126	84	8	398	32	15	6	45	1.71
34634418--34634442	11	2.3	11	100	0	50	44	24	8	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34652072--34652119	23	2.2	22	81	7	62	70	2	6	20	1.19
34653551--34653590	21	2.0	21	85	14	57	17	2	12	67	1.33
34653778--34654174	88	4.7	85	78	7	340	33	13	9	44	1.76
34653949--34654107	81	2.0	79	85	2	210	33	10	9	47	1.69
34669050--34669176	41	3.2	40	78	3	123	33	29	22	14	1.94
34674538--34674594	15	3.9	14	75	11	60	26	10	8	54	1.63
34674530--34674591	30	2.1	30	100	0	124	22	9	9	58	1.59
34681821--34681861	21	2.0	21	90	0	64	19	29	21	29	1.98
34685179--34685211	12	2.8	12	86	4	50	27	0	0	72	0.85
34685832--34685887	20	2.8	19	84	10	67	26	3	1	67	1.16
34689977--34690019	2	21.5	2	100	0	86	48	0	51	0	1.00
34690918--34690976	22	3.0	19	75	18	57	42	0	1	55	1.09
34696296--34696492	50	4.0	49	74	10	141	32	14	18	34	1.91
34700827--34700865	20	2.0	20	94	0	69	33	28	33	5	1.79
34711396--34711578	50	3.5	50	79	5	152	24	30	19	25	1.98
34711442--34711584	50	2.7	52	81	8	173	23	32	21	23	1.98
34711725--34711907	50	3.5	50	81	4	168	24	30	19	25	1.98
34711265--34712854	329	4.8	329	95	0	2815	25	26	20	27	1.99
34711771--34711913	50	2.7	52	82	8	182	23	32	20	23	1.98
34712054--34712242	50	3.7	50	79	4	189	24	29	20	24	1.99
34712418--34712524	50	2.1	50	82	0	133	20	33	21	24	1.97
34714645--34714694	20	2.5	20	81	12	66	44	20	24	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34715721--34715759	20	1.9	21	84	5	53	53	5	0	41	1.23
34726262--34726476	29	7.4	29	78	6	159	36	13	26	24	1.92
34726292--34726535	116	2.1	117	88	2	357	36	13	26	23	1.91
34726346--34726538	29	6.6	29	80	5	176	37	12	26	23	1.91
34728010--34728077	33	2.1	33	97	0	127	29	5	22	42	1.77
34729409--34729592	32	5.8	32	85	8	236	38	20	19	22	1.93
34729409--34729592	61	2.9	61	85	8	228	38	20	19	22	1.93
34729409--34729592	93	2.0	93	92	2	307	38	20	19	22	1.93
34729639--34729703	27	2.4	27	78	14	73	32	20	24	23	1.98
34729767--34729900	24	5.6	24	85	3	144	45	20	5	27	1.74
34729767--34729900	48	2.8	48	84	0	169	45	20	5	27	1.74
34729896--34729963	27	2.5	27	82	0	64	26	20	22	30	1.98
34729919--34729991	26	2.8	26	87	2	101	24	21	17	35	1.95
34729952--34730031	42	1.9	42	87	5	117	28	22	18	30	1.98
34730005--34730078	27	2.7	27	89	0	112	24	22	18	33	1.97
34730070--34730210	27	5.2	26	77	6	129	24	14	17	43	1.87
34730004--34730199	54	3.6	54	80	4	155	23	17	19	38	1.93
34730065--34730210	54	2.7	54	82	4	188	23	15	17	42	1.88
34736357--34736416	23	2.6	23	78	0	66	50	16	13	20	1.78
34746240--34746344	40	2.6	41	82	8	126	28	26	21	22	1.99
34747056--34747090	16	2.2	16	90	10	54	31	14	2	51	1.57
34752301--34752347	24	2.0	24	86	0	67	19	31	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34761214--34761275	24	2.6	25	71	7	65	41	17	0	40	1.50
34766899--34766951	26	2.0	26	96	0	97	28	26	9	35	1.87
34769228--34769268	22	1.9	22	90	5	66	14	12	9	63	1.52
34769233--34769279	22	2.1	22	84	0	58	12	14	10	61	1.56
34769966--34770022	26	2.2	27	78	9	64	50	0	1	47	1.11
34770009--34770037	15	1.9	15	100	0	58	55	0	0	44	0.99
34774815--34774870	25	2.2	27	78	18	66	44	25	0	30	1.54
34776451--34776490	15	2.6	16	88	8	64	0	25	0	75	0.81
34777926--34777965	17	2.4	17	95	0	71	40	17	2	40	1.63
34783916--34783961	14	3.1	14	87	12	58	2	21	2	73	1.04
34784742--34784783	20	2.2	20	87	12	61	64	2	16	16	1.40
34785229--34785258	16	1.9	16	93	6	53	30	0	20	50	1.49
34786219--34786257	20	1.9	21	89	5	62	33	12	2	51	1.54
34787573--34787658	38	2.3	38	93	4	147	22	16	10	51	1.74
34791618--34791860	50	4.8	50	88	0	351	20	30	22	26	1.98
34798731--34798973	50	4.8	50	88	0	351	20	30	22	26	1.98
34808273--34808306	16	2.1	16	100	0	68	52	0	0	47	1.00
34809202--34809248	11	4.2	11	88	2	67	17	36	0	46	1.48
34809228--34809415	51	3.4	51	76	18	189	30	25	1	43	1.62
34809292--34809321	13	2.3	13	100	0	60	33	26	0	40	1.57
34811729--34811917	25	7.7	25	78	10	176	43	0	13	42	1.44
34811666--34811892	96	2.4	96	93	2	377	44	0	12	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34811919--34812094	23	7.7	23	93	0	298	45	22	7	24	1.78
34814463--34814694	124	1.9	124	87	1	340	34	21	16	27	1.95
34815112--34815186	33	2.3	33	76	21	77	50	1	1	46	1.18
34815158--34815248	28	3.3	26	72	20	71	52	1	2	43	1.20
34817296--34817358	26	2.4	26	87	10	85	41	1	6	50	1.37
34817437--34817513	38	2.0	38	87	5	111	49	10	14	25	1.75
34819853--34819883	15	2.1	15	100	0	62	35	6	25	32	1.82
34820544--34820649	42	2.5	42	78	0	113	28	19	29	22	1.98
34821997--34822085	44	2.0	44	95	0	160	48	12	8	30	1.71
34822428--34822467	20	2.0	19	90	9	62	30	2	10	57	1.45
34827096--34827147	20	2.7	20	84	3	61	36	9	5	48	1.60
34842533--34842618	42	2.0	42	100	0	172	27	11	0	60	1.31
34842533--34842597	14	4.6	14	72	14	62	27	10	0	61	1.29
34847249--34847358	31	3.6	31	93	1	177	34	23	3	38	1.73
34847253--34847336	17	5.3	17	64	25	58	33	22	3	40	1.71
34847270--34847321	14	3.5	14	72	23	52	34	19	1	44	1.62
34849071--34849122	22	2.4	22	87	9	72	57	0	0	42	0.98
34849096--34849122	14	1.9	14	100	0	54	55	0	0	44	0.99
34849474--34849539	33	1.9	35	90	6	109	12	0	39	48	1.40
34849567--34849857	94	3.0	95	81	3	289	37	3	17	41	1.67
34849855--34849966	9	13.1	9	76	11	101	31	1	22	44	1.63
34849856--34849963	25	4.2	26	77	5	96	31	1	22	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34849854--34850041	16	10.9	16	69	15	58	28	2	22	45	1.66
34849933--34849998	18	3.7	18	76	10	55	25	4	25	43	1.73
34849889--34850028	34	4.1	33	68	14	88	26	3	23	46	1.68
34850024--34850105	33	2.5	32	78	9	85	34	2	15	47	1.59
34850054--34850097	21	2.1	21	87	8	63	34	2	15	47	1.58
34850089--34850157	34	2.0	36	91	5	115	36	1	15	46	1.56
34850150--34850188	19	2.2	19	90	9	64	56	0	2	41	1.13
34850252--34850392	15	9.4	15	72	17	89	52	4	1	41	1.29
34850256--34850339	17	4.9	17	74	12	75	53	4	1	40	1.30
34850259--34850319	31	2.0	30	87	3	86	54	6	1	37	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226