genome.fa.s24.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  140  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43469511--43469735	79	2.8	78	79	6	238	25	28	21	25	1.99
43469513--43469734	40	5.6	39	80	6	207	25	27	21	25	1.99
43469666--43469743	40	1.9	41	82	10	97	26	28	20	24	1.99
43475695--43475880	40	4.6	39	83	6	205	24	22	27	25	2.00
43475695--43475880	80	2.3	82	83	8	231	24	22	27	25	2.00
43475748--43475913	80	2.1	79	82	7	194	25	21	28	24	1.99
43477581--43477642	27	2.3	27	82	0	70	38	16	25	19	1.92
43479213--43479255	21	2.0	21	86	0	59	55	4	0	39	1.20
43479418--43479484	18	3.7	18	78	11	64	47	1	4	46	1.31
43479433--43479483	17	2.7	19	79	14	61	49	1	1	47	1.24
43479454--43479492	20	2.0	19	85	5	51	56	0	2	41	1.13
43480589--43480779	45	4.3	45	89	3	282	25	47	7	19	1.75
43480615--43480731	21	5.3	21	63	18	58	27	47	6	18	1.74
43480614--43480731	24	5.2	24	59	15	61	27	47	6	18	1.74
43480681--43480755	24	3.2	24	66	21	61	21	50	8	20	1.73
43497127--43497195	22	3.1	22	82	0	84	17	20	17	44	1.86
43497527--43497721	51	3.9	49	81	4	221	23	18	29	28	1.98
43504825--43505362	279	1.9	279	90	0	844	28	15	21	33	1.94
43506490--43506600	37	3.2	36	72	20	101	39	1	3	54	1.28
43508782--43508819	11	3.4	11	88	3	58	39	5	0	55	1.23
43509068--43509198	46	2.8	45	90	7	210	37	9	22	29	1.87
43512579--43512632	26	2.1	26	96	0	99	22	24	11	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43512788--43512817	12	2.5	12	88	0	51	70	13	13	3	1.30
43521496--43521623	36	3.5	35	78	10	132	22	10	14	52	1.72
43521470--43521730	72	3.6	71	76	9	208	24	15	13	46	1.82
43521605--43521728	36	3.5	36	77	11	105	25	16	14	44	1.85
43521531--43521765	110	2.2	106	80	7	258	25	13	14	46	1.81
43522025--43522090	31	2.1	31	97	0	123	60	6	12	21	1.53
43527746--43527770	12	2.1	12	100	0	50	40	0	24	36	1.55
43529682--43529742	25	2.4	26	94	2	106	39	8	0	52	1.31
43530355--43530413	19	3.2	19	82	4	84	37	13	0	49	1.43
43530485--43530646	82	2.0	82	98	0	315	38	5	9	46	1.59
43530730--43530793	19	3.4	19	78	4	85	51	1	10	35	1.47
43531201--43531262	28	2.2	28	94	2	108	48	0	8	43	1.32
43540550--43540619	7	9.6	7	75	9	59	22	0	31	45	1.53
43540562--43540617	22	2.5	22	88	2	76	23	0	28	48	1.51
43540545--43540610	15	4.4	15	77	5	62	21	0	33	45	1.52
43540638--43540677	21	1.9	21	85	10	55	47	20	0	32	1.50
43542589--43542634	23	2.0	23	100	0	92	60	0	4	34	1.16
43543084--43543139	27	2.1	27	86	0	76	39	0	41	19	1.52
43543313--43543453	42	3.3	42	83	3	167	12	18	16	53	1.73
43545526--43545683	78	2.0	78	97	0	298	37	15	17	29	1.91
43546173--43546212	14	2.9	14	88	7	55	62	0	12	25	1.30
43546173--43546212	13	2.9	15	82	14	50	62	0	12	25	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43552593--43552680	41	2.1	41	87	0	131	45	10	11	32	1.74
43558779--43558859	40	2.0	40	100	0	162	44	6	17	32	1.73
43567564--43567625	20	3.2	20	75	13	67	53	1	0	45	1.10
43568606--43568636	14	2.2	14	94	0	53	48	12	6	32	1.67
43573653--43573762	55	2.0	55	100	0	220	23	29	12	34	1.92
43592383--43592776	47	8.3	47	90	3	619	29	29	8	32	1.86
43592383--43592776	96	4.1	96	89	5	604	29	29	8	32	1.86
43592383--43592776	143	2.8	143	92	2	659	29	29	8	32	1.86
43598908--43598983	27	2.8	27	81	0	98	35	21	23	19	1.96
43600256--43600303	18	2.8	18	80	20	59	18	10	12	58	1.62
43616599--43616641	22	2.0	22	86	9	61	20	2	13	62	1.42
43621821--43622175	75	4.7	75	91	0	568	32	27	18	22	1.97
43622004--43622140	42	3.5	42	75	17	175	31	27	18	22	1.97
43634818--43635138	40	8.0	40	88	0	435	14	13	27	44	1.82
43634813--43635170	80	4.5	80	84	1	423	14	13	27	44	1.84
43635851--43635906	20	2.8	20	86	0	67	46	1	30	21	1.62
43638472--43638512	12	3.4	12	86	6	57	7	43	21	26	1.79
43649315--43649506	50	3.9	47	75	10	170	32	23	18	24	1.97
43649328--43649562	98	2.4	98	83	7	280	31	24	20	24	1.98
43661717--43661782	33	2.0	33	82	11	82	72	6	13	7	1.25
43661762--43661818	29	1.9	29	86	10	80	75	0	19	5	0.99
43662664--43662698	14	2.5	14	85	0	52	77	0	14	8	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43664202--43664555	50	7.1	49	71	9	261	34	24	17	24	1.96
43664164--43664611	100	4.5	100	86	3	557	33	24	19	23	1.97
43664164--43664636	198	2.4	198	81	4	540	33	23	19	23	1.97
43675070--43675115	18	2.4	20	82	7	60	76	2	17	4	1.06
43675072--43675114	20	2.1	21	87	8	63	79	2	13	4	1.00
43682572--43682605	16	2.1	17	88	5	52	35	20	5	38	1.77
43686756--43686795	20	2.0	20	95	0	71	27	20	10	42	1.83
43694095--43694132	19	2.0	19	85	10	51	63	2	21	13	1.42
43695440--43695491	14	3.9	13	76	20	54	50	15	7	26	1.71
43696119--43696190	27	2.7	27	88	0	108	37	27	19	15	1.92
43700387--43700609	119	1.9	120	83	8	294	25	27	21	25	2.00
43700385--43700607	79	2.8	80	82	7	231	25	27	21	25	1.99
43700385--43700609	40	5.6	41	79	9	243	25	27	21	24	1.99
43712501--43712610	31	3.6	31	68	14	93	27	30	10	31	1.91
43712473--43712701	60	3.8	59	86	5	309	27	28	11	32	1.91
43721232--43721279	25	2.0	23	84	11	62	22	14	27	35	1.93
43721275--43721322	25	1.9	25	91	0	78	33	14	18	33	1.91
43727437--43727542	40	2.7	40	100	0	212	37	19	25	16	1.93
43734088--43734118	16	2.0	15	93	6	53	51	0	19	29	1.47
43735072--43735120	25	2.0	25	95	0	89	30	22	20	26	1.98
43738229--43738259	6	5.2	6	100	0	62	0	32	0	67	0.91
43747022--43747051	4	7.2	4	92	7	51	73	0	26	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43753558--43753601	22	1.9	22	86	9	61	38	15	2	43	1.60
43769635--43769675	18	2.3	19	80	16	52	36	0	14	48	1.44
43786872--43786923	27	1.9	27	84	0	68	28	30	19	21	1.97
43799249--43799316	34	2.0	34	97	0	127	25	0	30	44	1.54
43803989--43804298	170	1.8	170	85	2	433	28	17	26	27	1.98
43807037--43807108	35	2.1	35	86	0	99	44	18	5	31	1.72
43807038--43807305	33	8.3	31	72	16	186	45	19	6	29	1.75
43807095--43807203	14	6.8	17	65	20	65	43	20	8	28	1.80
43807168--43807346	33	5.4	34	66	20	94	46	17	7	27	1.76
43807057--43807348	64	4.5	65	85	5	369	45	18	7	28	1.77
43807091--43807333	31	7.6	29	71	18	98	44	18	8	28	1.78
43807692--43807945	78	3.3	78	90	2	370	39	17	3	38	1.69
43810815--43811039	80	2.8	79	82	4	256	25	21	28	25	1.99
43810815--43811037	40	5.6	39	81	7	225	25	21	27	25	1.99
43810895--43811072	79	2.2	80	82	3	200	25	21	28	24	1.99
43815256--43815426	94	1.8	94	84	0	234	33	21	17	27	1.96
43825811--43826175	179	2.0	179	95	0	649	33	15	20	30	1.94
43829685--43829718	16	2.2	15	89	5	50	44	0	0	55	0.99
43829681--43829723	19	2.2	20	88	12	63	48	0	0	51	1.00
43830174--43830215	21	2.0	20	82	13	50	21	50	9	19	1.75
43830333--43830392	25	2.4	25	83	10	70	38	3	0	58	1.15
43830333--43830392	8	7.2	8	76	14	50	38	3	0	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43836220--43836253	16	2.1	16	88	5	50	8	0	14	76	1.01
43844431--43844481	21	2.4	22	83	6	61	9	21	0	68	1.18
43844431--43844487	21	2.7	20	79	15	53	8	22	0	68	1.17
43852437--43853147	359	2.0	359	90	1	1111	23	19	20	36	1.95
43853601--43853740	58	2.3	58	83	11	160	45	4	2	48	1.34
43857688--43857816	37	3.5	36	80	10	136	34	16	13	35	1.87
43875095--43875211	45	2.6	45	83	1	155	27	20	19	32	1.97
43875767--43875909	44	3.3	44	66	13	114	24	24	27	23	2.00
43875968--43876288	44	7.3	43	68	11	159	23	25	23	27	2.00
43875424--43876317	439	2.0	440	83	1	1141	23	24	24	27	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226