genome.fa.s24.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  115  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35790899--35790957	31	1.9	30	83	10	75	67	3	1	27	1.16
35795722--35795769	22	2.1	23	88	3	71	47	12	20	18	1.81
35813905--35813960	15	3.7	15	79	13	53	33	21	3	41	1.70
35818502--35818540	20	2.0	21	85	10	55	20	2	17	58	1.50
35826509--35826708	97	2.1	95	79	10	203	55	2	12	30	1.49
35826913--35826947	14	2.5	14	90	9	54	60	0	2	37	1.12
35829716--35829849	50	2.7	50	92	0	214	24	16	24	34	1.95
35833886--35834157	137	2.0	137	91	2	440	34	20	8	37	1.82
35835421--35835471	20	2.6	19	84	9	66	45	13	11	29	1.79
35837653--35837692	20	2.0	20	90	0	62	32	12	12	42	1.80
35840881--35841065	49	3.8	49	78	6	135	23	28	21	26	1.99
35840930--35841072	49	2.9	49	81	2	151	22	31	19	26	1.98
35842273--35842330	30	1.9	30	100	0	116	25	20	13	39	1.90
35849233--35849314	37	2.2	37	97	0	155	34	3	7	54	1.46
35851864--35851907	21	2.0	22	86	4	63	40	4	0	54	1.21
35854458--35854516	31	1.9	31	92	0	100	37	5	13	44	1.66
35855640--35855727	27	3.3	27	79	9	99	44	14	15	25	1.85
35855775--35855932	24	6.6	24	84	2	158	27	6	20	45	1.76
35855775--35855920	72	2.0	72	86	0	202	27	6	19	45	1.76
35856016--35856074	26	2.3	25	85	2	82	18	23	22	35	1.96
35856090--35856256	63	2.6	64	83	5	205	25	17	19	37	1.93
35856083--35856238	32	4.9	32	81	7	183	23	17	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35858930--35859062	24	5.5	24	83	0	131	27	8	19	45	1.79
35858930--35859062	48	2.8	48	85	4	153	27	8	19	45	1.79
35859005--35859062	11	4.8	13	71	16	61	22	8	20	48	1.77
35859176--35859241	26	2.5	26	85	0	78	19	21	24	34	1.96
35859235--35859434	32	6.3	32	85	0	240	23	20	20	37	1.95
35859237--35859434	96	2.1	95	87	2	281	23	20	19	36	1.95
35862097--35862184	27	3.3	27	83	0	95	40	13	18	27	1.88
35862148--35862213	27	2.4	27	94	0	114	33	12	27	27	1.92
35862232--35862353	24	5.1	24	82	0	127	28	9	18	43	1.81
35862447--35862499	27	2.0	27	88	7	81	20	26	20	32	1.98
35862540--35862726	32	5.8	32	82	0	194	25	17	18	38	1.93
35862536--35862726	96	2.0	96	83	2	240	25	17	18	38	1.92
35862731--35862804	22	3.3	22	75	1	76	14	21	21	41	1.89
35864436--35864460	10	2.5	10	100	0	50	40	12	8	40	1.72
35872990--35873213	39	5.7	40	83	9	248	25	26	22	25	2.00
35872990--35873213	40	5.7	40	86	6	262	25	26	22	25	2.00
35872990--35873213	79	2.8	78	81	11	260	25	26	22	25	2.00
35880744--35880969	80	2.8	79	82	10	280	25	26	22	26	2.00
35880744--35880969	120	1.9	120	83	9	300	25	26	22	26	2.00
35880744--35880969	40	5.7	39	85	7	253	25	26	22	26	2.00
35883235--35883278	9	5.0	9	86	2	63	68	0	11	20	1.20
35883555--35883700	20	7.3	19	68	9	85	14	30	18	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35883500--35883711	40	5.3	40	88	1	302	16	26	17	39	1.91
35883500--35883710	80	2.7	80	92	0	343	16	27	18	38	1.91
35888286--35888470	79	2.3	81	84	7	236	24	22	27	25	2.00
35888287--35888470	40	4.6	40	83	9	216	24	22	27	25	2.00
35888287--35888503	79	2.7	79	81	7	201	25	22	27	24	2.00
35899829--35899926	27	3.5	28	90	2	135	26	13	28	31	1.94
35899857--35899939	27	3.0	27	87	5	96	30	12	25	32	1.92
35899829--35899940	28	4.0	27	83	6	98	28	12	25	33	1.92
35909888--35909926	11	3.7	11	83	13	55	20	35	0	43	1.52
35913381--35913562	89	2.0	89	98	0	355	52	5	20	21	1.66
35913590--35913646	11	5.2	11	71	0	51	10	1	45	42	1.49
35913590--35913645	22	2.5	22	85	0	67	10	1	44	42	1.49
35928167--35928193	13	2.1	13	100	0	54	29	0	22	48	1.51
35936440--35936466	12	2.2	12	100	0	54	22	11	11	55	1.66
35939186--35939223	19	2.0	19	89	0	58	31	7	15	44	1.75
35947051--35947159	29	3.8	29	85	7	141	24	15	20	39	1.91
35947051--35947165	58	2.0	58	86	3	160	25	14	20	39	1.91
35947044--35947169	29	4.3	29	81	4	137	26	15	20	37	1.93
35948552--35948592	21	1.9	22	90	5	66	26	21	29	21	1.99
35967489--35967533	22	2.0	22	100	0	90	33	22	4	40	1.74
35968967--35969013	18	2.6	19	78	18	55	31	14	14	38	1.87
35988919--35989015	50	1.9	50	82	0	122	21	27	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35996183--35996221	20	2.0	20	90	10	62	15	23	5	56	1.59
35996519--35996617	50	2.0	50	87	0	144	20	32	22	25	1.98
36001229--36001264	18	2.1	18	89	5	56	16	30	38	13	1.88
36001229--36001278	18	2.8	17	82	8	55	20	28	36	16	1.93
36006526--36006707	50	3.7	49	78	8	165	28	21	27	23	1.99
36009845--36009871	10	2.7	10	100	0	54	22	0	22	55	1.44
36014250--36014428	87	2.0	88	93	1	306	38	10	12	38	1.78
36025012--36025188	50	3.4	50	85	4	210	27	22	28	20	1.99
36027796--36027988	50	3.7	51	81	5	219	26	20	29	23	1.99
36032067--36032141	31	2.4	29	81	16	87	32	29	12	26	1.92
36032088--36032149	31	2.0	31	96	0	115	35	27	9	27	1.88
36032341--36032527	41	4.6	41	90	1	268	19	29	21	29	1.98
36037771--36037821	25	2.0	25	84	7	66	21	11	15	50	1.76
36041874--36041907	16	2.1	16	88	0	50	38	2	29	29	1.72
36044344--36044387	5	8.2	5	87	9	61	77	0	2	20	0.88
36048853--36048913	25	2.4	25	86	0	77	26	26	19	27	1.99
36049457--36049495	20	2.0	20	94	0	69	25	2	23	48	1.63
36055975--36056018	23	1.9	22	82	17	54	36	25	0	38	1.56
36056071--36056156	45	1.9	45	90	0	136	33	25	15	25	1.95
36062726--36062899	45	3.9	45	84	3	228	32	23	16	28	1.96
36062733--36062899	90	1.9	89	88	1	253	32	23	14	28	1.95
36071457--36071681	119	1.9	120	83	8	298	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36071457--36071681	40	5.7	40	87	5	280	25	22	27	24	2.00
36071464--36071714	79	3.2	79	81	10	271	27	21	26	25	1.99
36077123--36077159	12	3.1	12	100	0	74	59	0	24	16	1.37
36077124--36077158	18	1.9	18	88	0	52	57	0	25	17	1.40
36077542--36077607	23	2.9	23	88	0	96	15	27	25	31	1.95
36081513--36081791	138	2.0	138	99	0	549	34	20	17	27	1.95
36084743--36084804	31	2.0	31	100	0	124	41	6	29	22	1.78
36086446--36086488	16	2.6	17	86	13	56	67	0	11	20	1.22
36087767--36087823	19	2.9	18	79	7	60	82	7	5	5	0.95
36087780--36087823	20	2.2	20	88	4	63	81	9	6	2	0.94
36096893--36096969	30	2.7	28	82	9	77	57	5	3	33	1.39
36097670--36097725	21	2.8	19	87	10	85	35	16	8	39	1.80
36097681--36097724	21	2.1	21	100	0	88	38	13	9	38	1.77
36098505--36098714	44	4.8	44	88	3	316	28	27	18	26	1.98
36098461--36098786	132	2.5	132	75	8	329	24	25	21	27	1.99
36098796--36099022	44	5.2	44	64	8	138	19	23	30	26	1.98
36098714--36099119	88	4.6	87	89	2	564	19	23	28	28	1.98
36099107--36099388	44	6.4	44	80	5	318	30	26	15	28	1.96
36099100--36099388	132	2.2	133	93	0	499	30	25	15	27	1.96
36104511--36104587	30	2.7	28	82	9	77	57	5	3	33	1.39
36105287--36105342	21	2.8	19	87	10	85	35	16	8	39	1.80
36105298--36105341	21	2.1	21	100	0	88	38	13	9	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36105742--36105800	3	19.7	3	100	0	118	33	0	0	66	0.92
36106016--36106077	3	20.7	3	100	0	124	33	0	0	66	0.92
36107362--36107411	22	2.4	21	80	9	57	42	4	4	50	1.40
36107917--36107972	29	1.9	29	96	0	103	39	0	3	57	1.16
36108733--36108763	15	2.1	15	93	0	53	41	9	0	48	1.36
36124048--36124234	67	2.8	66	90	3	293	27	14	8	50	1.71
36125660--36125695	16	2.2	16	100	0	72	19	36	25	19	1.95
36143269--36143453	40	4.7	40	86	6	234	24	21	27	25	1.99
36143269--36143453	79	2.3	82	84	6	238	24	21	27	25	1.99
36143322--36143486	79	2.1	79	85	4	217	26	20	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226