genome.fa.s24.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  175  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53549929--53549977	10	5.1	9	80	7	53	16	2	2	79	0.92
53549920--53550011	36	2.6	35	79	6	96	20	3	2	73	1.07
53554588--53554632	16	2.8	16	96	0	81	15	26	26	31	1.96
53554608--53554714	41	2.6	41	83	0	133	18	19	27	34	1.95
53556777--53556822	23	2.1	22	92	8	76	30	6	4	58	1.43
53556757--53556868	53	2.2	51	80	7	127	33	5	3	57	1.39
53558029--53558229	24	8.7	23	65	7	75	26	9	19	44	1.82
53558023--53558255	69	3.4	69	90	0	367	24	12	19	43	1.85
53559296--53559337	15	2.7	15	82	10	50	16	0	4	78	0.91
53559526--53559564	6	6.5	6	81	0	51	17	2	2	76	1.01
53565546--53565724	27	6.6	27	84	7	238	20	20	20	38	1.94
53565545--53565724	81	2.2	81	90	3	274	20	20	21	38	1.94
53570194--53570241	25	2.0	24	84	12	62	60	4	2	33	1.27
53587565--53587603	19	2.2	18	86	9	53	33	23	10	33	1.88
53588920--53589241	77	4.1	77	79	6	310	45	12	12	29	1.79
53588917--53589204	154	1.8	156	81	9	363	45	12	12	29	1.78
53589085--53589256	83	2.1	83	79	6	188	45	13	12	28	1.79
53601923--53601962	20	2.0	20	95	0	71	5	27	25	42	1.75
53603958--53603993	18	1.9	19	88	5	56	33	19	2	44	1.65
53604462--53604527	33	2.0	33	100	0	132	39	15	18	27	1.90
53608861--53608907	21	2.2	22	84	3	60	44	46	4	4	1.42
53609276--53609412	27	5.2	25	73	13	105	18	15	19	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53609276--53609412	54	2.6	53	82	9	163	18	15	19	46	1.84
53615284--53615829	284	1.9	284	87	0	806	28	24	13	33	1.93
53628388--53628490	49	2.3	41	74	22	116	33	2	26	36	1.71
53628400--53628496	49	2.0	49	97	0	185	36	4	25	34	1.75
53637196--53637290	25	3.8	25	67	18	72	28	22	21	28	1.99
53637428--53637465	17	2.2	17	95	0	67	34	18	7	39	1.80
53638982--53639094	54	2.1	54	83	1	138	17	21	18	42	1.89
53638982--53639094	27	4.2	27	81	3	122	17	21	18	42	1.89
53641705--53641896	102	1.9	104	91	2	316	35	27	16	21	1.94
53682297--53682367	27	2.6	27	86	2	97	36	18	21	23	1.95
53682452--53682497	24	1.9	24	81	0	56	26	13	19	41	1.88
53682688--53682858	32	5.4	33	78	9	151	19	19	21	39	1.92
53682685--53682856	63	2.7	64	86	4	224	19	19	20	39	1.93
53682849--53682913	22	3.0	22	74	0	67	18	20	16	44	1.87
53683068--53683133	28	2.4	28	82	2	89	19	25	22	31	1.98
53693663--53694070	27	15.1	27	86	0	485	18	18	21	41	1.90
53694736--53694777	12	3.5	12	78	12	50	26	40	0	33	1.56
53703500--53703524	8	3.1	8	100	0	50	24	0	0	76	0.80
53713981--53714390	27	15.2	26	77	5	343	41	21	16	19	1.90
53713981--53714390	81	5.0	81	80	1	426	41	21	16	19	1.90
53713981--53714390	54	7.6	54	81	2	419	41	21	16	19	1.90
53716855--53717001	40	3.7	40	77	0	141	29	12	25	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53718825--53718987	40	4.1	40	82	0	191	26	15	25	31	1.95
53721637--53721684	22	2.3	22	85	7	64	60	8	4	27	1.44
53731559--53731595	15	2.5	15	90	0	56	2	16	51	29	1.58
53731572--53731606	15	2.3	15	90	0	52	8	14	42	34	1.76
53732864--53733139	111	2.5	108	85	4	351	34	17	15	32	1.91
53732824--53733139	111	2.9	107	82	3	341	35	16	16	32	1.91
53733760--53733905	3	49.0	3	75	1	132	58	4	4	32	1.38
53734802--53734841	20	2.0	20	90	0	62	15	25	45	15	1.84
53735421--53735524	44	2.4	44	80	3	111	29	19	19	31	1.96
53735496--53735697	41	4.8	41	70	9	145	28	19	22	29	1.98
53735415--53735787	129	2.9	129	85	0	487	27	20	21	31	1.98
53735447--53735828	44	8.8	44	72	10	204	26	20	21	30	1.98
53735845--53736069	45	5.0	45	88	0	306	30	25	17	27	1.97
53747712--53748115	108	3.8	106	85	4	510	37	18	13	30	1.90
53747712--53748134	214	2.0	211	85	5	566	37	17	13	30	1.90
53748157--53748201	21	2.2	20	84	11	56	57	2	11	28	1.45
53748310--53748350	19	2.2	19	83	16	50	68	4	9	17	1.35
53748746--53748885	3	47.0	3	68	4	59	54	7	5	33	1.50
53752334--53752430	50	2.0	50	85	6	135	60	3	16	19	1.48
53752387--53752438	27	1.9	27	81	14	63	65	5	15	13	1.44
53753976--53754033	19	2.7	22	84	10	68	36	8	17	37	1.80
53756694--53756738	19	2.4	19	85	7	56	26	24	11	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53765007--53765220	45	4.8	45	84	1	259	28	17	22	30	1.97
53765004--53765222	90	2.4	90	86	0	285	29	17	23	30	1.97
53766509--53766553	23	2.0	23	100	0	90	57	4	26	11	1.52
53769833--53769988	73	2.2	71	85	2	204	30	23	23	23	1.99
53769833--53770293	192	2.5	187	86	5	651	26	23	25	24	2.00
53770067--53770533	114	4.1	115	89	2	681	24	21	25	27	1.99
53770749--53770979	7	32.4	7	70	13	89	18	3	35	43	1.65
53770739--53770805	22	3.0	21	80	8	80	14	5	43	35	1.71
53770825--53770898	8	9.8	8	83	5	66	17	1	37	43	1.58
53770825--53770898	15	4.9	15	81	5	78	17	1	37	43	1.58
53770921--53771069	62	2.4	63	78	10	171	17	2	28	51	1.56
53771030--53771070	14	2.9	15	75	14	50	14	0	24	60	1.34
53770917--53771069	21	7.4	21	67	7	53	17	1	30	50	1.57
53771058--53771265	103	2.0	103	93	0	355	26	3	31	38	1.73
53771084--53771142	24	2.4	24	78	10	66	25	3	37	33	1.73
53773292--53773573	9	32.3	9	72	13	214	44	20	2	32	1.64
53773291--53773505	79	2.7	78	87	5	299	45	20	1	32	1.60
53773293--53773573	43	6.7	43	71	15	185	44	20	2	32	1.64
53773292--53773584	52	5.6	51	75	11	202	45	20	2	32	1.63
53779093--53779141	21	2.3	21	89	0	80	34	20	40	4	1.71
53779524--53779835	42	7.4	41	85	5	374	25	18	21	33	1.96
53779586--53779816	83	2.8	82	89	4	345	27	19	21	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53779524--53779835	85	3.7	86	83	3	373	25	18	21	33	1.96
53779864--53779897	17	2.0	17	100	0	68	29	5	17	47	1.71
53781529--53781688	45	3.6	44	80	3	167	42	13	18	25	1.87
53781529--53781709	45	4.0	44	75	9	150	41	13	19	24	1.88
53781565--53781730	90	1.8	90	83	5	219	42	14	19	22	1.88
53782170--53782194	10	2.5	10	100	0	50	44	12	0	44	1.41
53783694--53783833	40	3.5	40	87	0	190	31	16	31	20	1.95
53783732--53783796	20	3.2	20	68	8	60	29	15	33	21	1.94
53793246--53793372	63	2.0	63	82	8	152	23	29	21	25	1.99
53794174--53794213	21	2.0	21	90	5	64	52	22	5	20	1.65
53796899--53796945	14	3.4	14	77	16	53	0	19	4	76	0.95
53805315--53805358	20	2.2	20	95	0	79	56	9	6	27	1.55
53810988--53811197	74	2.8	75	89	0	323	30	28	19	20	1.97
53811172--53811225	27	2.0	28	96	3	101	25	29	24	20	1.99
53811098--53811326	104	2.2	101	89	3	350	29	28	21	20	1.98
53818098--53818304	33	5.7	33	70	19	137	29	28	20	20	1.98
53818099--53818308	74	2.8	74	90	2	323	29	29	20	20	1.98
53818283--53818336	28	1.9	28	92	0	90	25	27	24	22	2.00
53818209--53818442	104	2.3	101	88	3	344	29	27	20	21	1.98
53819035--53819068	11	2.8	12	91	8	52	35	8	11	44	1.72
53820291--53820335	23	2.0	23	81	0	54	60	0	6	33	1.23
53820386--53820414	14	2.0	15	93	6	51	41	6	0	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53826249--53826292	11	3.9	11	84	3	61	65	0	2	31	1.05
53826249--53826292	12	3.8	12	82	17	58	65	0	2	31	1.05
53826337--53826387	18	2.8	18	83	13	68	27	0	0	72	0.85
53826343--53826388	20	2.1	23	88	11	71	28	0	0	71	0.86
53827900--53827929	8	3.8	8	90	0	51	60	0	40	0	0.97
53829372--53829396	11	2.3	11	100	0	50	52	8	0	40	1.31
53855902--53856017	43	2.7	43	80	9	139	18	17	30	33	1.94
53862637--53862674	18	2.2	18	86	9	53	34	0	2	63	1.09
53862962--53862993	15	2.0	17	88	11	50	40	0	3	56	1.15
53865418--53865460	22	1.9	23	90	4	70	20	6	4	67	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226