Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  123  of  226  ( 27070 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38083396--38083575
89
2.0
89
98
0
351
38
16
16
27
1.90
38088227--38088260
4
8.5
4
86
0
50
23
0
52
23
1.47
38091291--38091324
16
2.1
16
88
0
50
50
14
17
17
1.79
38094124--38094164
21
2.0
21
90
0
64
29
21
29
19
1.98
38096069--38096102
16
2.1
16
88
0
50
50
14
17
17
1.79
38097021--38097063
18
2.4
18
92
0
68
0
58
0
41
0.98
38099880--38099912
12
2.8
12
90
4
50
39
33
18
9
1.82
38100394--38100443
19
2.7
18
81
6
64
36
2
4
58
1.29
38103470--38103551
40
2.0
40
100
0
164
9
7
36
46
1.65
38103470--38103533
20
3.1
21
61
17
53
9
7
34
48
1.64
38104370--38104418
4
12.2
4
77
0
53
42
46
6
4
1.47
38104370--38104418
6
8.2
6
88
0
53
42
46
6
4
1.47
38104370--38104418
12
4.1
12
86
0
62
42
46
6
4
1.47
38107943--38108025
43
1.9
44
82
2
105
24
21
10
43
1.84
38111846--38111899
20
2.7
21
80
8
67
48
16
7
27
1.73
38114688--38114768
41
2.0
40
85
2
108
24
25
9
39
1.86
38115141--38115184
20
2.1
20
87
8
61
52
4
2
40
1.34
38115338--38115381
20
2.1
20
87
8
61
52
4
2
40
1.34
38115410--38116096
153
4.5
154
86
5
961
52
6
9
31
1.58
38116747--38116799
20
2.5
20
84
6
61
30
3
5
60
1.37
38118136--38118175
19
2.0
19
85
9
53
65
5
0
30
1.14
38118155--38118225
36
1.9
36
85
5
97
60
0
1
38
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38119493--38119534
20
2.1
20
100
0
84
38
26
14
21
1.91
38120243--38120281
15
2.4
17
87
8
55
38
0
5
56
1.22
38120932--38120978
3
15.7
3
100
0
94
68
0
0
31
0.90
38121386--38121445
28
2.1
28
84
6
77
25
15
10
50
1.74
38136832--38136885
23
2.4
23
96
3
101
38
7
29
24
1.82
38151345--38151398
26
2.1
26
96
0
99
42
14
9
33
1.78
38155832--38155868
17
2.2
17
90
0
56
35
5
5
54
1.47
38158430--38158486
19
2.7
22
76
15
66
40
17
7
35
1.77
38158420--38158477
22
2.6
22
81
7
64
41
17
5
36
1.72
38159431--38159711
150
1.9
150
88
0
427
28
19
20
30
1.97
38159551--38160117
266
2.1
267
89
0
866
26
25
20
27
1.99
38160196--38160315
44
2.7
44
90
2
179
29
27
17
25
1.98
38161582--38161628
11
4.5
10
79
10
58
4
12
0
82
0.80
38161584--38161628
16
2.9
16
83
9
58
4
13
0
82
0.82
38162573--38162657
36
2.5
33
87
10
127
62
2
12
22
1.42
38162577--38162651
36
2.1
36
100
0
150
58
2
14
24
1.49
38165579--38165904
109
3.0
108
91
3
499
33
19
16
30
1.94
38166331--38166395
25
2.7
25
77
13
73
53
3
9
33
1.48
38166360--38166405
23
2.0
23
82
0
56
56
4
4
34
1.39
38166417--38166459
3
14.3
3
90
0
68
65
2
2
30
1.18
38168930--38169002
19
3.7
19
89
7
110
36
16
10
35
1.84
38171792--38171868
11
7.4
11
75
18
58
62
0
2
35
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38171772--38171918
50
3.1
49
76
21
152
63
1
2
33
1.15
38171821--38171887
10
6.6
10
76
19
59
68
0
1
29
0.98
38171849--38171932
43
2.0
43
85
4
116
64
1
1
33
1.09
38173305--38173593
50
5.7
50
78
4
260
22
26
21
29
1.99
38173674--38173714
19
2.2
19
100
0
82
39
9
14
36
1.79
38179625--38179917
50
5.8
50
78
4
232
24
26
20
27
1.99
38179626--38179917
100
2.9
100
82
5
302
24
27
20
28
1.99
38179732--38179917
50
3.6
51
86
5
241
23
29
20
25
1.99
38187794--38187829
18
2.0
18
88
0
54
41
0
8
50
1.33
38192292--38192329
20
1.9
20
88
0
58
36
26
28
7
1.84
38200399--38200423
13
1.9
13
100
0
50
52
0
0
48
1.00
38200839--38200876
16
2.3
17
95
4
69
34
7
15
42
1.76
38206319--38206345
13
2.1
13
100
0
54
70
0
14
14
1.17
38209704--38209741
18
2.1
18
95
0
67
55
10
2
31
1.48
38221254--38221301
19
2.4
21
80
19
59
22
29
16
31
1.96
38223021--38223065
23
2.0
23
82
8
56
6
20
4
68
1.29
38225075--38225109
18
1.9
18
100
0
70
51
2
0
45
1.16
38225528--38225552
13
1.9
13
100
0
50
56
8
28
8
1.57
38228338--38228419
19
4.3
19
73
11
69
15
35
17
31
1.91
38228537--38228802
43
6.3
43
85
2
326
27
30
16
24
1.97
38233913--38234047
72
1.9
73
81
4
166
38
5
39
16
1.73
38243225--38243265
20
2.1
20
86
4
57
29
2
7
60
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38247668--38247721
25
2.2
25
82
0
63
22
18
31
27
1.97
38248219--38248253
14
2.5
14
90
0
52
51
8
11
28
1.67
38252894--38252964
37
1.9
37
100
0
142
40
7
15
36
1.74
38253508--38253540
17
2.0
17
88
5
50
30
24
12
33
1.91
38260358--38260397
20
2.0
21
90
5
64
52
20
0
27
1.46
38263902--38264026
63
2.0
63
91
0
205
32
17
21
28
1.96
38263776--38264096
133
2.4
136
78
6
328
31
17
22
28
1.97
38265612--38265659
20
2.4
20
85
0
69
37
14
20
27
1.92
38267599--38267749
9
16.6
9
68
16
62
65
3
2
27
1.24
38267773--38267816
22
2.0
22
90
0
70
56
9
0
34
1.31
38267997--38268031
3
12.0
3
93
6
63
31
0
0
68
0.90
38268372--38268447
29
2.6
29
82
12
84
39
1
1
57
1.15
38268395--38268438
20
2.2
20
84
8
54
40
0
2
56
1.11
38269226--38269275
3
16.7
3
100
0
100
66
0
0
34
0.92
38270502--38270541
22
1.9
21
90
10
64
65
5
5
25
1.34
38272059--38272677
87
7.1
87
95
0
1085
24
24
23
27
2.00
38272059--38272765
261
2.7
261
90
1
1094
24
24
23
27
2.00
38272650--38272978
88
3.8
88
88
2
473
20
22
27
29
1.99
38272691--38272913
44
5.1
44
64
6
146
21
24
26
27
1.99
38274174--38274235
1
62.0
1
75
0
52
3
1
8
87
0.72
38274168--38274206
20
2.0
20
89
0
60
2
10
7
79
1.02
38274177--38274235
25
2.3
25
88
8
84
3
1
8
86
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38274174--38274232
20
2.9
20
85
7
66
3
1
8
86
0.75
38274176--38274234
15
3.9
15
82
13
77
3
1
8
86
0.75
38274312--38274344
14
2.3
15
89
5
50
27
33
12
27
1.92
38278583--38278623
22
2.0
21
90
9
66
63
4
4
26
1.35
38279996--38280026
3
10.3
3
100
0
62
67
32
0
0
0.91
38280178--38280224
18
2.6
18
86
3
58
40
4
6
48
1.48
38284943--38284989
18
2.6
18
86
6
69
74
4
0
21
0.99
38284943--38284991
6
8.2
6
76
0
53
75
4
0
20
0.96
38284959--38285007
24
2.0
24
84
7
64
69
4
0
26
1.06
38287562--38287641
30
2.7
30
84
3
99
35
21
13
30
1.92
38289601--38289642
21
2.0
21
86
9
59
50
0
2
47
1.14
38289816--38289857
21
1.9
23
85
9
61
59
7
9
23
1.53
38290325--38290361
11
3.3
11
92
3
56
67
0
2
29
1.04
38290966--38291004
20
1.9
21
89
5
62
20
10
5
64
1.44
38294970--38295165
40
4.9
40
83
3
225
25
26
16
32
1.96
38300599--38300640
21
2.0
22
85
4
59
7
7
7
78
1.09
38311042--38311066
13
1.9
13
100
0
50
56
8
0
36
1.29
38318341--38318442
51
2.0
51
94
0
177
27
32
17
22
1.96
38322452--38322501
25
2.0
26
96
4
93
4
26
4
66
1.27
38327954--38328310
47
7.6
47
90
1
534
32
8
29
29
1.87
38327954--38328310
190
1.9
188
93
1
615
32
8
29
29
1.87
38330222--38330412
99
1.9
100
82
3
242
25
24
21
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38339761--38339807
24
1.9
24
86
4
67
36
0
38
25
1.56
38340468--38340691
81
2.8
81
86
0
304
42
18
16
22
1.89
38340468--38340694
27
8.4
27
81
1
249
41
18
17
22
1.90
38350985--38351073
37
2.5
36
87
7
121
34
25
11
28
1.90
38351266--38351453
41
4.6
41
78
11
118
24
28
19
28
1.98
38351300--38351455
41
3.8
41
87
1
206
23
28
19
27
1.99
38358179--38358411
54
4.1
54
74
14
234
42
1
7
47
1.42
38358194--38358279
28
3.1
27
65
24
63
46
2
8
43
1.46
38358281--38358332
15
3.6
15
80
12
56
44
0
1
53
1.11
38358233--38358448
120
1.8
120
100
0
432
42
1
6
49
1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226