genome.fa.s24.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  118  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36746823--36746857	14	2.4	15	90	4	54	57	0	14	28	1.38
36746912--36746947	18	2.0	19	89	10	58	16	5	5	72	1.23
36751274--36751361	20	4.4	20	72	11	63	35	22	17	25	1.95
36753856--36753900	17	2.6	17	82	0	54	24	26	26	22	2.00
36762432--36762581	43	3.5	43	86	3	194	31	25	17	26	1.97
36779508--36779566	31	2.0	29	83	6	73	64	11	10	13	1.50
36780966--36780996	7	4.4	7	91	0	53	3	22	0	74	0.96
36783143--36783171	10	2.9	10	100	0	58	51	20	17	10	1.74
36785485--36785614	50	2.6	50	90	2	199	33	15	14	36	1.88
36789530--36789556	12	2.2	12	100	0	54	29	0	14	55	1.40
36797473--36797521	20	2.3	22	89	6	75	14	24	20	40	1.89
36797458--36797521	20	3.0	20	82	13	74	14	25	20	40	1.89
36810590--36810622	17	1.9	17	93	0	57	0	21	6	72	1.05
36814377--36814506	41	3.2	41	85	1	181	22	27	16	33	1.95
36814409--36814468	20	2.9	22	68	14	63	25	30	15	30	1.95
36819035--36819078	19	2.3	19	84	0	61	61	2	11	25	1.41
36822019--36822063	24	1.9	24	86	4	65	37	2	11	48	1.51
36822144--36822353	106	2.0	106	91	1	341	29	20	7	42	1.80
36822712--36822760	21	2.4	20	83	16	57	44	0	4	51	1.20
36823864--36823949	19	4.3	19	78	16	84	38	0	4	56	1.20
36825095--36825142	18	2.6	19	83	12	64	25	2	0	72	0.95
36825094--36825147	18	2.9	18	76	13	56	24	1	1	72	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36825094--36825151	19	3.1	19	80	5	73	24	1	1	72	1.03
36825724--36825835	42	2.6	42	90	1	170	33	27	18	20	1.96
36825724--36825931	42	4.9	42	79	8	152	30	25	18	25	1.98
36825806--36825956	43	3.4	43	79	7	151	27	26	16	29	1.97
36826324--36826459	66	2.1	66	90	0	209	11	26	18	43	1.84
36831915--36832132	9	25.3	9	68	21	112	33	2	20	43	1.65
36831919--36831990	25	2.9	25	82	0	90	31	2	22	43	1.68
36832036--36832099	25	2.5	25	79	2	74	39	0	18	42	1.51
36832048--36832132	37	2.4	37	88	5	131	34	0	20	45	1.51
36832055--36832123	16	4.0	16	74	17	66	33	0	18	47	1.49
36832205--36832296	30	3.1	30	93	0	157	43	1	10	44	1.46
36832297--36832397	20	5.2	20	79	11	129	38	3	6	50	1.48
36832143--36832450	57	5.4	56	82	9	301	40	3	9	46	1.52
36832412--36832443	15	2.1	15	94	0	55	40	9	0	50	1.35
36832719--36832751	15	2.3	15	94	5	59	48	6	6	39	1.53
36833232--36833273	19	2.2	19	86	0	57	23	2	45	28	1.66
36833796--36833833	20	1.9	20	88	0	58	57	10	0	31	1.32
36835267--36835305	21	1.9	21	94	5	71	25	7	10	56	1.59
36835320--36835383	29	2.1	31	85	5	87	29	3	3	64	1.24
36836761--36836952	96	2.0	96	93	2	332	29	20	22	27	1.98
36836657--36837284	210	2.9	212	85	6	798	30	18	22	28	1.98
36836857--36837301	114	3.9	114	88	1	622	29	19	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36836857--36837302	229	1.9	229	87	2	655	29	19	22	28	1.98
36837773--36837813	21	2.0	21	85	9	57	24	0	41	34	1.55
36837794--36837858	14	4.6	14	72	14	53	23	0	44	32	1.53
36838057--36838087	14	2.1	15	94	5	55	29	0	32	38	1.57
36838150--36838189	17	2.5	15	81	14	53	30	0	32	37	1.58
36838524--36838578	18	2.9	19	84	10	69	69	1	1	27	1.09
36838524--36838559	6	5.8	6	96	3	63	69	0	0	30	0.89
36838593--36838663	36	1.9	36	82	2	88	47	5	1	45	1.35
36838944--36839158	84	2.6	83	82	4	227	27	17	22	32	1.97
36840657--36840683	14	1.9	14	100	0	54	14	25	14	44	1.84
36841596--36841937	56	6.0	56	80	12	385	46	11	1	40	1.47
36841653--36841881	34	6.7	34	78	14	256	47	11	0	40	1.44
36841663--36841726	9	7.6	9	74	22	50	46	15	0	37	1.46
36841671--36841760	41	2.1	42	82	11	105	43	14	0	42	1.45
36841740--36841849	9	11.6	9	69	25	59	51	11	0	36	1.39
36841659--36841762	25	4.2	25	65	21	65	45	13	0	41	1.43
36841712--36841945	65	3.7	63	77	14	232	46	11	1	41	1.48
36841858--36841903	22	2.1	22	91	0	74	45	10	0	43	1.39
36841924--36842065	9	16.7	9	71	13	95	41	18	1	38	1.59
36841929--36841961	16	2.1	16	100	0	66	45	24	0	30	1.53
36841924--36842065	34	4.2	33	67	17	76	41	18	1	38	1.59
36841697--36841994	56	5.1	58	67	18	152	44	13	1	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36842013--36842063	16	3.1	16	88	5	75	43	21	1	33	1.64
36842067--36842122	25	2.2	25	83	0	67	44	12	5	37	1.65
36842103--36842136	16	2.1	16	94	0	59	52	14	0	32	1.42
36847584--36847729	65	2.2	66	83	7	181	40	15	28	15	1.88
36847701--36847744	21	2.1	21	86	0	61	36	15	43	4	1.68
36847708--36847760	21	2.5	21	84	0	61	32	18	43	5	1.74
36847720--36847812	21	4.4	21	73	0	87	34	15	41	8	1.77
36848120--36848308	43	4.4	43	83	2	209	23	16	31	28	1.96
36848120--36848497	86	4.4	86	74	6	277	24	20	28	26	1.99
36848120--36848430	43	7.2	42	75	5	185	24	19	28	26	1.99
36848854--36848891	14	2.7	14	84	8	51	52	26	0	21	1.47
36848866--36848919	21	2.6	21	84	0	72	48	29	1	20	1.60
36849095--36849127	13	2.4	14	85	5	50	51	27	0	21	1.48
36849677--36850223	114	4.8	113	70	7	399	26	19	23	30	1.98
36849596--36850212	228	2.7	224	87	4	833	26	19	23	30	1.98
36851282--36851323	20	2.2	19	83	12	50	21	0	14	64	1.29
36851803--36851925	40	3.1	40	79	4	117	39	21	17	22	1.93
36851977--36852163	41	4.6	41	87	1	241	22	21	26	29	1.99
36852195--36852239	21	2.0	23	83	8	58	42	2	4	51	1.34
36852477--36852542	15	4.5	14	71	7	51	25	0	36	37	1.57
36852443--36852538	14	6.6	14	72	9	52	22	0	36	40	1.55
36852737--36852857	21	5.7	21	72	11	95	28	0	31	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36855358--36855388	10	3.1	10	95	0	53	16	19	12	51	1.76
36856867--36856954	43	2.1	42	86	2	122	36	9	10	44	1.70
36857224--36857432	43	4.9	42	83	5	208	21	16	30	31	1.96
36857276--36857454	86	2.1	86	81	6	202	22	16	29	31	1.96
36857514--36857555	22	1.9	22	90	0	66	47	28	14	9	1.75
36858047--36858072	9	2.9	9	100	0	52	42	0	0	57	0.98
36860215--36860271	26	2.2	26	80	0	69	54	3	0	42	1.17
36868979--36869042	27	2.4	26	71	7	65	48	9	3	39	1.51
36869156--36869200	23	1.9	24	95	4	83	60	0	15	24	1.36
36869150--36869207	11	5.1	11	80	14	64	60	0	15	24	1.35
36869258--36869326	22	3.1	22	85	6	86	55	1	15	27	1.50
36869258--36869324	11	6.1	11	70	19	59	55	1	16	26	1.50
36869267--36869324	17	3.5	17	73	17	50	56	1	15	25	1.49
36869509--36869598	16	5.6	16	67	17	51	62	3	10	24	1.42
36869626--36869688	6	11.2	6	77	13	53	61	1	3	33	1.21
36870001--36870075	34	2.2	34	88	2	107	61	1	9	28	1.35
36870001--36870098	34	2.8	33	81	9	106	60	1	11	27	1.37
36870195--36870269	39	1.9	39	89	5	116	65	0	13	21	1.26
36870222--36870264	16	2.5	18	78	21	56	67	0	11	20	1.22
36870195--36870313	56	2.1	56	86	6	161	63	0	14	21	1.36
36870203--36870308	11	9.5	11	72	17	76	59	0	15	24	1.42
36872837--36873069	90	2.6	90	81	5	251	57	12	6	23	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36875350--36875427	17	4.5	17	78	15	72	52	0	23	24	1.47
36875353--36875430	23	3.4	21	77	16	75	53	0	21	24	1.46
36875358--36875430	29	2.5	29	75	16	71	54	0	21	23	1.45
36875350--36875430	6	14.2	5	79	18	63	53	0	22	24	1.47
36877903--36877949	14	3.4	14	73	5	51	57	6	0	36	1.24
36877896--36877949	27	2.0	27	96	0	99	55	9	0	35	1.32
36878773--36878804	2	16.0	2	100	0	64	0	50	0	50	1.00
36888647--36888687	11	3.7	11	80	0	55	19	14	9	56	1.66
36888724--36888785	30	2.1	30	93	0	106	27	1	11	59	1.41
36893218--36893281	20	3.2	21	86	4	71	23	28	15	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226