genome.fa.s24.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  143  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44706768--44707127	180	2.0	179	97	0	675	30	23	14	32	1.94
44707463--44707504	9	4.7	9	77	11	50	45	2	0	52	1.13
44707633--44707702	29	2.3	31	85	4	90	48	14	12	24	1.78
44707634--44707702	31	2.3	29	85	5	84	49	14	13	23	1.78
44708561--44708622	2	31.0	2	100	0	124	0	0	50	50	1.00
44710571--44710615	20	2.2	21	84	11	58	62	8	2	26	1.37
44713406--44713491	46	1.9	44	85	4	118	33	22	19	24	1.97
44714261--44714298	20	1.9	20	100	0	76	44	21	7	26	1.79
44715265--44715301	18	2.1	18	100	0	74	21	10	10	56	1.64
44716055--44716088	11	3.2	11	87	8	52	8	11	14	64	1.49
44722122--44722157	19	1.9	19	88	5	56	52	16	13	16	1.74
44726160--44726203	22	2.0	22	90	0	70	40	11	6	40	1.68
44728926--44729216	50	5.7	50	91	2	420	21	31	21	25	1.98
44728869--44729208	100	3.3	100	86	2	338	23	30	20	25	1.98
44735015--44735255	50	4.7	50	87	5	295	23	30	19	26	1.98
44734979--44735255	100	2.7	100	85	3	311	23	29	19	27	1.98
44738461--44738519	31	1.9	31	85	0	82	37	10	27	25	1.88
44738468--44738556	31	2.9	31	76	10	83	40	13	25	20	1.89
44740188--44740247	27	2.2	27	87	0	84	25	25	15	35	1.94
44740235--44740291	27	2.1	27	83	0	69	24	21	8	45	1.80
44740656--44740752	50	1.9	50	82	0	122	30	22	12	34	1.91
44743890--44743942	20	2.7	20	79	2	63	32	7	3	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44744666--44744706	21	2.0	21	85	0	55	24	26	4	43	1.74
44747530--44747582	26	2.0	26	82	13	65	16	1	15	66	1.35
44753960--44754011	27	1.9	27	88	0	77	17	19	38	25	1.93
44755760--44755807	25	1.9	25	82	0	60	37	0	2	60	1.09
44755834--44755999	86	1.9	85	79	6	183	47	3	8	40	1.51
44756442--44756511	17	3.7	17	68	23	50	58	5	1	34	1.31
44756420--44756509	41	2.2	42	84	9	123	60	5	1	33	1.27
44756668--44756705	14	2.6	14	84	15	51	47	0	0	52	1.00
44757057--44757082	6	4.3	6	100	0	52	15	0	0	84	0.62
44760850--44760920	28	2.5	28	95	0	133	21	36	7	35	1.80
44763483--44763575	44	2.1	44	90	6	143	36	24	4	34	1.75
44763557--44763596	16	2.5	16	95	0	71	27	27	7	37	1.84
44765888--44765991	41	2.5	42	85	4	149	30	32	19	17	1.95
44782744--44782806	32	2.0	32	87	3	92	57	22	0	20	1.41
44786165--44786266	29	3.5	29	76	7	73	36	16	14	32	1.89
44799165--44799193	10	3.0	10	95	5	51	51	0	10	37	1.36
44799404--44799584	73	2.5	73	78	7	195	21	15	25	37	1.93
44801594--44801664	25	2.8	25	82	4	81	28	26	16	28	1.97
44801594--44801685	25	3.8	24	77	12	80	29	27	17	26	1.97
44807255--44807292	14	2.7	14	91	0	58	39	10	18	31	1.85
44807840--44807922	31	2.5	32	75	16	82	50	0	1	48	1.08
44808823--44808978	29	5.4	28	83	5	161	37	21	15	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44811288--44811326	2	19.5	2	100	0	78	0	51	0	48	1.00
44813373--44813468	47	2.0	47	97	0	183	16	17	23	41	1.89
44821818--44821882	32	2.0	32	96	0	121	49	6	20	24	1.71
44825883--44825919	16	2.3	17	81	13	51	56	0	2	40	1.13
44826429--44826460	16	1.9	17	93	6	57	31	3	6	59	1.38
44826467--44826513	18	2.4	20	75	17	53	42	6	4	46	1.48
44833833--44833877	14	3.1	14	87	3	63	73	2	22	2	1.05
44833833--44833883	14	3.5	15	83	2	61	74	1	21	1	1.02
44845975--44846007	14	2.3	15	84	10	50	60	0	0	39	0.97
44852607--44852975	30	12.3	30	78	8	324	37	13	25	23	1.91
44852605--44852923	90	3.6	89	80	7	367	37	13	25	23	1.92
44852757--44852975	119	1.8	119	86	1	314	38	13	24	23	1.91
44856874--44857002	48	2.7	47	79	6	125	21	24	23	31	1.99
44861499--44861523	13	1.9	13	100	0	50	20	0	0	80	0.72
44863204--44863246	18	2.4	18	96	0	77	18	46	6	27	1.75
44863514--44863566	26	2.0	27	85	10	74	30	22	20	26	1.98
44867341--44867379	6	6.2	6	88	11	60	82	0	15	2	0.79
44867341--44867379	13	3.1	12	89	10	60	82	0	15	2	0.79
44872855--44872911	30	1.9	30	82	13	73	43	3	3	49	1.36
44873087--44873152	13	5.1	13	80	7	80	37	22	7	31	1.82
44886744--44886773	9	3.4	9	95	4	53	16	0	0	83	0.65
44890592--44890720	65	2.0	65	81	0	150	34	22	20	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44892549--44892593	23	1.9	24	95	4	83	48	15	20	15	1.80
44902767--44902799	17	1.9	17	100	0	66	57	12	12	18	1.64
44908112--44908323	54	3.9	54	81	4	225	45	21	17	15	1.85
44908074--44908323	81	3.1	80	80	4	252	44	20	17	17	1.86
44908067--44908324	27	9.6	26	78	8	171	44	20	17	17	1.87
44908452--44908494	17	2.4	18	77	14	54	32	16	6	44	1.74
44912218--44912244	14	1.9	14	100	0	54	37	22	25	14	1.93
44917710--44917736	13	2.1	13	100	0	54	37	0	14	48	1.45
44943001--44943059	30	2.0	30	89	0	91	33	18	13	33	1.90
44951681--44951714	18	1.9	18	88	5	52	70	0	2	26	1.01
44955088--44955133	20	2.3	20	96	0	83	47	4	23	23	1.69
44957178--44957220	20	2.2	20	100	0	86	23	9	34	32	1.87
44957460--44957495	17	2.1	17	89	0	54	25	8	22	44	1.80
44957465--44957503	17	2.3	17	86	0	51	30	10	17	41	1.83
44966028--44966074	23	2.1	22	84	11	60	27	2	65	4	1.22
44966220--44966267	24	2.0	23	84	4	60	35	0	2	62	1.07
44966487--44966547	29	2.1	30	84	9	81	31	8	14	45	1.74
44970559--44970611	20	2.5	21	87	9	72	66	0	26	7	1.18
44970588--44970671	39	2.2	39	85	6	111	63	0	25	11	1.28
44970710--44970749	12	3.3	12	82	0	53	60	2	22	15	1.47
44973215--44973528	157	2.0	157	96	0	583	26	15	22	35	1.94
44974498--44974554	29	2.0	29	89	0	87	31	29	12	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44975905--44975951	24	2.0	24	100	0	94	27	21	17	34	1.95
44979143--44979202	28	2.1	28	81	12	68	65	0	1	33	1.03
44980178--44980272	33	2.9	32	75	6	86	38	4	2	54	1.32
44981826--44982204	156	2.4	155	81	5	406	36	15	10	37	1.83
44981769--44982204	79	5.5	77	82	3	433	36	15	11	37	1.83
44981832--44982238	77	5.2	77	82	5	282	35	15	11	38	1.83
44982242--44982408	85	2.0	85	92	2	282	34	10	10	44	1.73
44986158--44986202	23	1.9	24	82	13	58	22	4	6	66	1.33
44999168--44999279	55	2.0	55	100	0	224	41	7	25	25	1.80
45000287--45000311	12	2.1	12	100	0	50	16	16	8	60	1.58
45010131--45010433	146	2.1	146	97	0	570	36	15	10	36	1.83
45016599--45016629	4	8.0	4	92	7	55	25	0	0	74	0.82
45026219--45026397	95	1.9	95	95	4	326	32	17	13	36	1.89
45032055--45032107	23	2.4	22	76	20	56	9	18	1	69	1.25
45037387--45037572	103	1.8	98	81	5	228	44	12	15	27	1.83
45038059--45038095	16	2.3	17	86	9	51	70	0	5	24	1.08
45040927--45041022	45	2.1	45	84	0	129	28	17	22	31	1.97
45041065--45041108	23	1.9	22	82	17	54	38	0	25	36	1.56
45048198--45048223	3	8.7	3	100	0	52	30	0	0	69	0.89
45049557--45049607	19	2.6	20	87	6	77	41	9	0	49	1.36
45049565--45049608	19	2.3	19	96	0	79	45	11	0	43	1.40
45049781--45049825	20	2.2	20	84	0	54	44	11	0	44	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45050129--45050154	5	5.2	5	100	0	52	19	19	0	61	1.35
45050222--45050267	3	15.3	3	100	0	92	32	0	32	34	1.58
45050305--45050343	18	2.2	18	85	0	51	79	0	17	2	0.84
45050632--45050662	16	1.9	16	100	0	62	51	9	19	19	1.74
45050669--45051006	42	8.1	42	83	3	414	34	21	21	23	1.97
45051397--45051455	19	3.1	19	79	13	59	3	8	6	81	0.97
45055121--45055186	33	2.0	33	90	0	105	28	12	25	33	1.92
45055636--45055670	17	2.1	17	100	0	70	17	11	22	48	1.79
45058700--45058751	23	2.3	23	89	0	77	36	0	13	50	1.42
45060920--45060955	16	2.2	16	95	0	63	25	0	33	41	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226