genome.fa.s24.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  141  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43875424--43876317	88	10.2	88	86	3	965	23	24	24	27	2.00
43883401--43883438	13	3.1	12	85	14	51	73	7	2	15	1.17
43883736--43883825	25	3.4	26	75	23	89	58	5	3	32	1.37
43883734--43883825	27	3.4	27	75	15	75	58	5	3	32	1.37
43892295--43892359	33	2.0	32	84	3	85	73	0	20	6	1.03
43892295--43892340	17	2.8	17	75	12	51	76	0	19	4	0.96
43893366--43893411	9	5.1	9	89	0	65	13	39	10	36	1.79
43895865--43895984	42	2.9	42	87	5	197	41	3	5	50	1.41
43896836--43896880	8	6.1	8	75	19	53	64	11	0	24	1.26
43900075--43900131	30	1.9	29	85	3	78	21	22	22	33	1.97
43901352--43901382	2	15.5	2	100	0	62	0	51	0	48	1.00
43919632--43919677	23	2.0	23	100	0	92	52	8	17	21	1.71
43924006--43924032	9	3.0	9	100	0	54	33	11	0	55	1.35
43929343--43929398	28	2.0	27	82	3	67	25	16	8	50	1.74
43937525--43937561	3	12.3	3	100	0	74	67	0	0	32	0.91
43941939--43942186	38	6.6	38	83	2	293	13	22	30	33	1.92
43941947--43942186	114	2.1	114	87	0	338	13	22	30	33	1.92
43942166--43942224	25	2.4	25	88	0	91	13	18	30	37	1.90
43943964--43944033	30	2.3	30	90	0	104	22	31	28	17	1.96
43967227--43967421	51	3.9	50	82	3	239	29	27	16	25	1.97
43967235--43967419	101	1.8	101	87	3	273	30	26	16	25	1.97
43974291--43974326	19	1.9	18	88	5	54	36	5	5	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43981663--43981756	42	2.2	42	84	0	125	20	20	34	25	1.96
43983173--43983283	32	3.5	31	75	6	98	38	20	19	20	1.93
43983452--43983557	24	4.4	24	89	0	131	45	24	7	22	1.78
43983459--43983528	11	6.0	11	71	12	59	48	25	5	20	1.71
43983579--43984098	27	19.3	27	73	3	395	21	20	19	38	1.93
43983579--43984098	81	6.4	80	76	4	445	21	20	19	38	1.93
43983603--43983844	107	2.3	107	84	5	319	23	21	18	37	1.94
43984454--43984493	18	2.2	18	86	8	55	22	50	15	12	1.77
43986618--43986674	22	2.6	23	86	8	82	42	19	26	12	1.86
43986618--43986709	22	4.0	22	77	12	80	38	21	26	14	1.91
43987581--43987607	13	2.1	13	100	0	54	0	25	0	74	0.83
43987713--43987879	35	4.9	35	88	5	261	18	22	17	40	1.91
43987713--43987889	67	2.6	67	90	3	275	18	22	16	41	1.90
43992734--43992777	20	2.1	22	84	16	58	13	9	9	68	1.40
43998434--43998659	40	5.7	40	85	6	257	26	21	26	26	1.99
44000216--44000253	14	2.8	13	88	7	58	44	5	13	36	1.66
44003900--44003958	22	2.5	22	81	8	64	38	20	25	15	1.91
44004866--44004908	22	2.0	22	81	9	52	9	13	6	69	1.35
44004914--44005111	5	39.4	5	95	3	344	58	0	0	41	0.98
44025407--44025467	28	2.2	28	84	0	77	22	19	13	44	1.85
44030200--44030228	15	1.9	15	100	0	58	68	0	6	24	1.13
44030203--44030237	15	2.3	15	90	0	52	71	0	8	20	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44030200--44030237	18	2.1	18	85	9	51	71	0	7	21	1.11
44038545--44038702	65	2.4	65	88	0	217	25	22	20	31	1.98
44039864--44039904	6	6.3	6	84	15	55	17	7	0	75	1.02
44047160--44047209	18	2.5	20	87	9	68	72	4	20	4	1.18
44049414--44049448	12	2.8	12	91	4	52	51	11	11	25	1.71
44069147--44069188	12	3.5	12	96	0	75	26	45	19	9	1.80
44074662--44074694	17	1.9	17	93	0	57	60	12	12	15	1.59
44089605--44089736	54	2.4	54	93	2	221	25	26	15	31	1.96
44097790--44097897	41	2.6	41	88	0	153	25	20	26	27	1.99
44097790--44097929	41	3.5	39	79	12	133	27	18	26	27	1.98
44102760--44102805	16	2.8	17	77	9	51	58	4	2	34	1.30
44102754--44102807	24	2.2	25	78	15	60	61	3	3	31	1.31
44103472--44103526	28	1.9	29	88	3	85	52	14	5	27	1.63
44105085--44105127	20	2.2	20	100	0	86	18	32	30	18	1.95
44106870--44107050	95	1.9	95	97	0	344	30	17	8	43	1.78
44135832--44135856	13	1.9	13	100	0	50	56	8	8	28	1.57
44143175--44143289	43	2.7	43	87	1	167	27	13	24	33	1.93
44145423--44145627	27	7.6	27	82	3	205	26	15	28	28	1.96
44145424--44145627	54	3.8	54	82	3	239	26	15	28	28	1.96
44145424--44145573	81	1.9	81	88	0	228	28	17	28	26	1.98
44153415--44153619	27	7.6	27	83	3	205	25	16	29	28	1.96
44153416--44153619	54	3.8	54	82	3	239	25	16	29	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44153417--44153565	81	1.8	81	89	0	235	26	18	28	26	1.98
44166055--44166351	50	5.9	49	76	7	229	22	27	22	27	1.99
44166055--44166298	100	2.5	99	82	2	292	21	27	23	27	1.99
44169174--44169219	23	2.0	23	100	0	92	30	17	0	52	1.45
44184965--44185043	25	3.2	25	78	7	72	26	24	22	26	2.00
44184989--44185047	25	2.4	24	82	2	73	28	23	22	25	1.99
44193104--44193225	22	5.3	22	62	21	61	25	29	11	33	1.91
44193076--44193766	47	14.6	47	91	4	961	27	29	9	33	1.89
44195215--44195334	56	2.1	56	98	0	231	22	23	9	45	1.81
44195811--44195884	36	2.1	36	100	0	148	47	16	10	25	1.79
44202605--44202644	19	2.1	19	100	0	80	55	15	5	25	1.60
44209992--44210134	50	2.9	50	86	0	196	25	22	29	22	1.99
44217678--44217871	50	3.9	50	80	2	203	28	22	27	22	1.99
44218073--44218121	20	2.5	20	81	15	66	57	6	22	14	1.59
44221975--44222011	18	2.0	19	89	5	58	51	0	43	5	1.24
44223268--44223473	103	2.0	103	97	0	385	39	20	10	29	1.85
44228565--44228726	45	3.6	46	80	8	172	18	19	16	45	1.85
44228695--44228818	45	2.8	45	90	2	196	25	21	16	36	1.94
44228808--44228907	46	2.2	46	87	1	139	19	16	19	46	1.85
44232341--44232462	35	3.5	35	82	0	127	22	26	15	36	1.94
44234650--44234682	17	1.9	17	93	0	57	42	15	0	42	1.46
44241986--44242051	27	2.5	26	82	7	78	57	0	1	40	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44241986--44242045	28	2.2	28	85	5	79	60	0	0	40	0.97
44245304--44245432	43	3.0	43	88	3	188	25	23	3	48	1.66
44248470--44248734	40	6.7	40	87	4	349	25	27	21	24	1.99
44248470--44248734	119	2.2	121	85	4	351	25	27	21	24	1.99
44256483--44256746	40	6.7	40	87	5	349	25	27	21	25	2.00
44256483--44256746	118	2.2	121	84	6	351	25	27	21	25	2.00
44256883--44256929	21	2.1	23	88	11	71	42	14	6	36	1.72
44261684--44261733	18	2.8	17	85	8	64	44	0	20	36	1.52
44264207--44264335	42	3.0	43	85	4	172	24	24	3	47	1.69
44267282--44267316	17	2.0	18	88	5	54	45	5	2	45	1.41
44268426--44268458	17	1.9	17	100	0	66	30	6	27	36	1.81
44275619--44275661	20	2.2	20	86	0	59	2	18	2	76	1.00
44279988--44280019	16	2.0	16	93	0	55	40	6	21	31	1.78
44281299--44281364	30	2.2	30	91	0	105	25	16	34	22	1.95
44285548--44285601	19	2.8	19	88	0	81	20	24	24	31	1.98
44296267--44296301	8	4.4	8	92	0	61	25	0	0	74	0.82
44297576--44297618	15	2.8	15	89	3	50	53	11	6	27	1.63
44297585--44297620	15	2.4	15	95	0	63	52	11	5	30	1.59
44299483--44299517	18	1.9	18	88	0	52	42	2	0	54	1.15
44302699--44303497	47	16.7	47	92	2	1274	33	8	29	29	1.86
44302699--44303497	96	8.4	94	94	1	1274	33	8	29	29	1.86
44303616--44303716	37	2.7	37	96	0	184	24	19	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44313606--44314140	289	1.9	289	92	0	910	37	8	19	34	1.82
44316352--44316386	16	2.2	16	89	0	52	40	0	2	57	1.14
44316474--44316530	15	3.5	15	71	17	51	49	1	1	47	1.22
44317206--44318425	610	2.0	610	92	0	2037	32	16	15	36	1.89
44319400--44319472	36	2.0	36	100	0	146	31	10	16	41	1.83
44321745--44321815	26	2.7	26	95	0	124	29	19	22	28	1.98
44333559--44333608	19	2.7	19	84	9	68	28	2	2	68	1.12
44333562--44333615	19	2.9	19	79	17	60	24	1	3	70	1.13
44339549--44339642	38	2.5	37	82	3	107	30	23	13	31	1.93
44346333--44346368	17	2.1	17	100	0	72	63	0	0	36	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226