genome.fa.s24.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  158  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49030998--49031023	6	4.3	6	100	0	52	50	0	15	34	1.45
49039956--49040024	21	3.0	22	75	21	77	36	18	21	23	1.95
49047470--49047521	23	2.3	22	75	21	54	9	23	1	65	1.32
49047479--49047533	12	4.6	12	73	15	51	12	23	0	63	1.29
49047515--49047552	17	2.2	18	85	4	51	10	23	2	63	1.39
49052140--49052206	26	2.6	26	95	0	116	22	31	23	22	1.98
49059289--49059342	29	1.9	28	85	7	74	24	12	20	42	1.87
49062059--49062098	15	2.6	15	96	4	71	75	0	0	25	0.81
49072518--49072850	97	3.4	97	98	0	639	41	13	6	38	1.70
49072939--49072965	11	2.5	11	100	0	54	48	25	0	25	1.52
49075981--49076189	92	2.3	91	85	5	260	45	3	4	45	1.41
49076241--49076451	66	3.4	62	68	23	174	41	3	6	48	1.44
49076328--49076379	15	3.6	15	80	12	56	44	0	1	53	1.11
49076307--49076492	54	3.2	53	68	24	142	44	2	4	49	1.34
49076205--49076500	120	2.5	120	90	5	458	42	3	4	49	1.39
49076432--49076741	150	2.0	154	90	4	484	47	5	4	42	1.47
49076865--49076900	16	2.2	16	100	0	72	38	36	0	25	1.56
49079878--49079912	9	3.9	9	85	14	54	22	0	0	77	0.78
49079878--49079912	18	2.0	17	94	5	61	22	0	0	77	0.78
49081243--49081267	12	2.1	12	100	0	50	52	8	0	40	1.31
49081608--49081947	22	14.6	25	66	13	154	40	15	13	31	1.85
49081594--49081797	47	4.4	47	93	1	304	41	14	13	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49081779--49081817	20	2.0	20	94	0	69	41	17	10	30	1.83
49081732--49081864	67	2.0	67	95	0	239	40	15	12	31	1.84
49081684--49081910	114	2.0	113	93	0	391	40	15	12	31	1.85
49081637--49081953	161	2.0	160	91	1	519	40	15	12	31	1.85
49081798--49081953	47	3.3	47	91	1	251	39	16	12	32	1.85
49082215--49082249	15	2.3	15	90	9	54	51	22	0	25	1.48
49082899--49083022	43	2.9	43	81	11	137	31	30	19	18	1.96
49087186--49087222	19	2.0	19	89	5	58	48	8	0	43	1.32
49090338--49090413	38	2.0	38	97	0	143	26	19	10	43	1.83
49096888--49096933	25	1.9	24	82	8	58	54	0	17	28	1.43
49098061--49098801	50	14.8	50	69	2	383	23	21	24	29	1.99
49098088--49098801	100	7.1	100	90	0	1077	23	22	24	29	1.99
49098789--49099041	46	5.7	46	68	12	152	28	19	18	32	1.96
49098788--49099169	175	2.2	175	94	0	665	28	19	18	32	1.96
49100441--49100469	15	1.9	15	100	0	58	13	13	3	68	1.33
49100440--49100469	7	4.1	7	91	8	51	13	13	3	70	1.30
49106353--49106389	18	2.1	18	90	10	58	62	5	0	32	1.18
49107185--49107218	6	5.7	6	100	0	68	85	0	0	14	0.60
49107918--49107942	2	12.5	2	100	0	50	48	0	0	52	1.00
49109669--49109722	28	2.0	27	85	3	72	5	29	0	64	1.16
49112071--49112122	26	2.0	27	92	3	88	44	0	5	50	1.26
49131289--49131336	19	2.6	19	81	18	57	6	18	4	70	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49131855--49132033	54	3.3	54	77	4	173	22	24	25	27	2.00
49136453--49136495	18	2.4	18	88	3	61	18	30	37	13	1.90
49141658--49141773	3	39.0	3	92	1	198	69	0	30	0	0.88
49142024--49142300	129	2.1	130	81	2	315	37	13	19	29	1.90
49144736--49144760	13	1.9	13	100	0	50	68	16	0	16	1.22
49145424--49145594	41	4.2	41	79	5	123	25	23	22	28	1.99
49145475--49145621	41	3.5	41	85	2	177	25	23	22	29	1.99
49150846--49150985	28	5.0	28	80	5	156	52	10	15	21	1.71
49150846--49150985	56	2.5	57	83	1	174	52	10	15	21	1.71
49157903--49157995	18	5.2	18	86	0	123	30	23	15	31	1.95
49171907--49171990	20	4.2	21	74	19	81	29	17	15	36	1.91
49181467--49181525	30	2.0	29	83	6	73	45	0	32	22	1.52
49181614--49181670	29	1.9	30	92	3	98	36	0	43	19	1.51
49188678--49188739	20	3.0	21	77	13	58	45	6	12	35	1.68
49188779--49188839	20	3.0	20	78	4	70	36	1	13	49	1.52
49193571--49193664	30	3.1	30	92	1	143	27	22	6	43	1.77
49193574--49193627	15	3.7	15	73	11	58	27	20	7	44	1.78
49193586--49193666	15	5.3	16	72	11	71	27	20	6	45	1.75
49198254--49198336	29	2.8	29	90	3	121	27	21	7	43	1.79
49199305--49199458	41	3.7	41	86	4	202	23	19	21	35	1.96
49199305--49199458	84	1.8	83	87	1	227	23	19	21	35	1.96
49199433--49199490	30	1.9	30	89	0	89	22	15	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49199872--49199920	21	2.3	21	82	6	64	4	36	18	40	1.70
49205326--49205468	9	15.8	9	79	1	160	32	2	17	48	1.59
49205326--49205621	27	10.7	27	76	12	203	32	2	15	50	1.55
49205496--49205594	20	4.8	20	73	15	67	34	0	13	52	1.40
49205490--49205594	29	3.4	29	82	10	129	33	0	13	53	1.40
49205573--49205612	9	4.4	9	80	0	53	32	0	20	47	1.50
49205790--49205909	62	1.9	62	84	0	159	50	10	5	35	1.58
49205852--49205889	16	2.4	16	91	4	60	52	5	0	42	1.24
49205886--49205913	13	2.2	13	100	0	56	46	7	7	39	1.59
49206898--49206952	30	1.9	29	82	10	69	58	9	3	29	1.46
49206993--49207038	24	1.9	24	100	0	92	43	19	28	8	1.80
49206987--49207020	15	2.3	15	100	0	68	41	20	26	11	1.87
49209415--49209496	7	11.6	7	75	14	53	39	41	1	18	1.58
49209400--49209471	22	3.3	22	81	11	69	40	43	0	16	1.48
49209406--49209493	28	3.1	28	80	11	99	37	43	1	18	1.57
49209636--49209691	7	7.9	7	78	9	51	33	50	0	16	1.45
49215570--49215669	50	2.0	50	100	0	200	40	12	18	30	1.86
49215957--49215986	16	1.9	16	93	6	53	50	6	10	33	1.62
49216306--49216335	15	1.9	16	93	6	53	43	0	0	56	0.99
49217204--49217240	18	2.1	18	90	5	58	37	2	10	48	1.52
49223103--49223331	86	2.7	82	82	6	271	17	20	29	31	1.96
49223103--49223337	41	5.6	41	80	6	274	19	20	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49223792--49223900	7	15.1	7	72	5	65	19	0	45	34	1.50
49223792--49223915	22	5.7	21	69	15	65	19	0	44	36	1.51
49224583--49224615	16	2.1	16	100	0	66	60	6	6	27	1.44
49224693--49224728	15	2.3	16	90	4	56	61	0	2	36	1.11
49232628--49232661	15	2.3	15	100	0	68	41	5	5	47	1.52
49232962--49233114	66	2.3	66	98	0	297	47	12	3	36	1.58
49233082--49233192	20	5.8	20	75	12	115	47	6	4	41	1.49
49233141--49233192	21	2.5	21	87	3	70	48	5	1	44	1.38
49233093--49233210	55	2.2	53	84	9	148	45	8	3	42	1.51
49233225--49233278	25	2.2	25	83	6	65	50	22	3	24	1.65
49233367--49233447	9	9.7	9	70	20	50	51	19	3	24	1.63
49233358--49233488	16	8.1	16	70	17	83	50	19	3	26	1.64
49233310--49233504	66	2.9	66	83	4	214	47	20	4	28	1.68
49233359--49233488	41	3.2	40	84	2	152	50	19	3	26	1.65
49233391--49233446	25	2.2	25	87	0	76	50	19	3	26	1.64
49233400--49233453	25	2.2	25	82	0	63	55	18	1	24	1.52
49233435--49233497	25	2.5	26	75	15	69	49	17	3	30	1.62
49233453--49233500	25	1.9	25	91	0	78	43	18	4	33	1.69
49238884--49239046	66	2.5	66	83	2	193	39	17	28	15	1.90
49239387--49239590	43	4.7	43	82	3	232	24	19	29	26	1.98
49243160--49243201	19	2.2	19	87	8	59	59	11	4	23	1.51
49243909--49243966	28	2.1	28	83	6	73	27	20	0	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49244484--49244533	26	1.9	26	84	8	66	24	0	10	66	1.22
49244974--49245028	21	2.6	21	79	0	65	21	7	40	30	1.81
49249007--49249070	23	2.7	23	86	11	78	53	20	0	26	1.46
49252918--49252949	14	2.3	14	100	0	64	50	6	6	37	1.53
49253761--49253826	31	2.1	31	82	0	78	27	36	16	19	1.93
49266976--49267020	17	2.6	17	82	10	56	2	33	0	64	1.06
49268719--49268873	63	2.5	63	80	2	150	28	25	21	25	1.99
49275841--49275878	20	1.9	20	88	0	58	36	18	18	26	1.94
49275880--49275937	29	2.0	29	93	0	98	44	24	10	20	1.82
49276506--49276559	25	2.2	25	89	0	81	24	12	46	16	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226