genome.fa.s24.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  98  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30594951--30594993	20	2.2	20	86	0	59	20	13	11	53	1.71
30600714--30600757	12	3.5	12	82	17	54	29	2	2	65	1.16
30600690--30600763	26	3.0	24	78	11	71	25	5	1	67	1.20
30603152--30603315	43	3.8	42	76	7	136	30	28	17	24	1.97
30605002--30605070	16	4.6	15	76	15	63	13	2	4	79	0.99
30606095--30606131	19	1.9	19	100	0	74	54	5	24	16	1.63
30607329--30607525	98	2.0	98	96	0	367	37	24	10	27	1.88
30608194--30608247	25	2.3	24	87	9	76	57	3	7	31	1.44
30608200--30608247	25	2.0	25	91	4	80	56	4	8	31	1.48
30609004--30609116	19	5.8	19	87	4	163	34	15	11	38	1.83
30609004--30609115	40	2.8	40	93	2	183	34	14	11	39	1.82
30609292--30610020	44	16.8	44	73	14	459	26	24	21	27	1.99
30609282--30610104	217	3.8	217	96	0	1495	26	23	21	28	1.99
30609295--30610150	433	2.0	431	92	1	1365	26	23	21	28	1.99
30610091--30610611	132	3.9	132	94	0	889	23	24	21	30	1.99
30610183--30610611	44	9.8	44	65	9	185	24	24	20	30	1.98
30615617--30615813	98	2.0	98	92	0	331	38	23	8	29	1.85
30616480--30616533	25	2.3	24	87	9	76	57	3	7	31	1.44
30616486--30616533	25	2.0	25	91	4	80	56	4	8	31	1.48
30617294--30617406	19	5.8	19	87	4	172	35	15	10	38	1.81
30617294--30617405	40	2.8	40	94	2	192	35	14	10	39	1.81
30617287--30617406	59	2.1	56	87	6	170	35	15	10	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30624093--30624146	27	2.0	28	85	3	74	46	1	9	42	1.46
30629222--30629314	44	2.1	44	86	6	125	36	26	4	32	1.76
30629296--30629336	16	2.6	16	92	0	73	26	31	4	36	1.78
30630801--30631065	103	2.6	104	90	3	408	29	29	20	20	1.98
30631393--30631457	30	2.2	29	81	8	76	30	27	6	35	1.81
30631400--30631457	30	1.9	30	85	0	80	31	24	6	37	1.82
30632540--30632587	19	2.6	19	78	18	57	60	0	2	37	1.09
30632698--30632737	16	2.5	17	84	12	57	45	0	25	30	1.54
30632710--30632744	16	2.2	16	100	0	70	45	0	31	22	1.53
30633103--30633138	9	4.1	9	89	3	56	30	11	13	44	1.79
30641194--30641258	30	2.2	28	89	7	103	29	1	0	69	0.98
30641193--30641317	38	3.2	40	84	10	152	32	2	0	64	1.06
30641244--30641308	11	6.4	11	75	24	63	38	3	0	58	1.14
30641206--30641277	30	2.4	30	86	4	92	33	2	0	63	1.08
30641214--30641317	38	2.6	39	90	6	165	34	2	0	62	1.10
30641291--30641330	21	1.9	21	89	0	62	37	2	0	60	1.11
30641290--30641348	22	2.8	21	80	14	59	40	1	3	54	1.27
30641901--30642146	65	3.8	64	87	3	350	30	1	24	43	1.64
30646277--30647012	365	2.0	366	97	0	1393	31	17	20	30	1.96
30647773--30647825	16	3.3	16	89	0	79	35	7	28	28	1.84
30649825--30650193	26	14.2	26	88	0	479	37	20	16	26	1.93
30650942--30650986	19	2.3	19	85	11	56	40	17	2	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30657590--30657813	26	8.6	26	85	2	297	36	18	18	26	1.94
30657776--30657851	38	2.0	38	87	5	109	30	23	22	23	1.99
30657755--30657877	64	1.9	64	83	9	162	32	21	21	25	1.98
30657724--30657894	90	1.9	90	84	7	231	35	21	18	25	1.95
30657815--30657896	26	3.1	27	92	3	132	34	24	15	25	1.95
30657815--30657924	52	2.1	54	84	6	145	33	23	18	24	1.97
30658649--30658692	21	2.0	22	87	12	65	36	20	4	38	1.73
30659132--30659410	143	2.0	143	89	2	427	27	5	18	48	1.70
30676688--30676713	7	3.7	7	100	0	52	11	0	15	73	1.11
30681058--30681083	4	6.5	4	100	0	52	46	0	0	53	1.00
30690621--30690983	182	2.0	181	95	0	654	33	8	20	37	1.83
30691962--30692148	70	2.7	70	84	2	234	39	19	20	20	1.93
30694337--30694400	13	4.9	13	84	0	92	31	7	25	35	1.84
30696439--30696606	72	2.3	72	83	4	205	54	13	5	26	1.61
30697035--30697099	18	3.7	18	83	2	87	41	13	12	32	1.82
30699591--30699691	25	4.0	25	93	0	157	50	24	22	1	1.59
30699569--30699709	44	3.1	44	82	11	183	50	24	23	2	1.60
30699561--30699616	19	2.9	19	89	0	85	53	21	23	1	1.55
30699641--30699709	19	3.3	19	69	21	57	49	24	23	2	1.64
30703644--30703734	29	3.1	29	74	13	96	48	21	8	20	1.77
30703769--30703838	29	2.4	30	82	2	88	38	27	14	20	1.91
30711545--30711589	24	1.9	23	82	13	56	48	20	6	24	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30714718--30714764	11	4.1	11	78	10	58	65	2	0	31	1.04
30715575--30715631	27	2.1	27	83	6	71	35	15	14	35	1.88
30717734--30717763	13	2.3	13	94	0	51	46	0	10	43	1.37
30719326--30719374	19	2.7	19	79	17	59	59	0	2	38	1.09
30719461--30719519	19	3.4	17	78	19	68	47	0	28	23	1.52
30719871--30719907	9	4.1	9	89	0	56	32	10	10	45	1.74
30723303--30723431	65	2.0	65	90	1	206	37	20	17	24	1.93
30723367--30724658	101	13.3	101	74	10	912	38	17	15	27	1.90
30723718--30723978	88	3.0	87	78	3	283	40	14	14	30	1.86
30723622--30724148	276	1.9	277	81	1	644	39	15	15	29	1.88
30723809--30729422	202	29.3	189	67	16	1554	38	17	15	28	1.90
30723983--30724169	88	2.1	88	84	0	239	38	17	17	27	1.91
30724563--30724896	87	3.8	87	78	7	284	38	16	14	30	1.88
30724581--30724896	88	3.6	84	76	9	260	38	14	14	31	1.87
30725005--30725294	101	2.9	100	81	2	321	36	17	16	29	1.92
30725210--30725454	81	2.9	85	78	10	243	38	16	15	28	1.90
30725376--30728021	101	27.0	100	71	12	1197	38	17	15	28	1.90
30725955--30726160	87	2.3	89	75	6	224	40	17	14	27	1.88
30725053--30726363	678	1.9	671	84	4	1744	38	17	15	28	1.90
30726344--30726368	13	1.9	13	100	0	50	52	40	0	8	1.31
30726419--30726586	88	1.9	88	80	2	194	36	13	16	33	1.88
30726975--30727222	88	2.8	89	82	6	283	39	14	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30726765--30727819	378	2.8	374	82	5	1235	38	16	15	28	1.90
30727923--30728197	88	3.1	87	81	6	272	39	15	14	30	1.87
30727759--30729424	377	4.3	378	74	11	1329	37	17	15	29	1.90
30726745--30728975	478	4.7	477	78	7	2058	38	17	15	29	1.90
30728097--30729177	101	11.0	101	76	9	839	37	17	15	28	1.91
30728404--30728670	88	3.0	88	81	5	292	38	16	15	28	1.90
30728577--30729568	101	10.1	100	74	9	653	38	18	15	28	1.91
30729112--30729354	87	2.8	85	80	5	263	39	16	15	29	1.89
30729080--30729354	88	3.1	89	78	5	258	38	17	15	29	1.90
30731140--30731213	29	2.6	29	86	4	96	25	31	16	27	1.96
30739211--30739284	29	2.6	29	82	4	87	25	32	14	27	1.95
30741054--30741219	87	1.9	87	80	7	194	42	16	13	26	1.86
30741125--30741309	101	1.8	100	82	3	237	40	17	16	26	1.90
30741238--30741396	87	1.8	87	84	0	219	37	15	17	28	1.91
30741303--30741745	101	4.4	100	75	6	385	38	19	15	26	1.92
30741071--30741499	188	2.3	187	78	4	441	37	18	14	28	1.91
30741865--30742134	101	2.7	100	80	3	301	40	15	17	27	1.90
30741956--30742161	100	2.0	101	82	2	245	41	17	14	26	1.87
30742067--30742425	88	4.1	87	77	5	337	40	15	16	28	1.88
30741790--30743211	464	3.0	466	80	6	1423	39	16	16	27	1.90
30742185--30742425	87	2.8	88	82	3	299	40	15	16	28	1.88
30742346--30742733	101	3.9	101	75	8	348	39	18	15	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30742629--30742909	88	3.2	88	81	1	312	37	17	17	27	1.92
30742804--30743290	100	4.8	98	76	7	388	39	17	16	27	1.91
30742804--30743370	101	5.8	101	77	9	476	39	17	15	27	1.90
30743231--30743480	87	2.9	86	77	9	222	40	16	15	28	1.88
30743526--30743752	82	2.7	82	80	5	249	37	15	17	29	1.91
30743587--30744099	188	2.7	186	76	6	518	39	16	16	27	1.90
30743944--30744214	88	3.1	87	79	6	287	37	15	17	29	1.90
30744308--30746475	100	22.5	100	73	10	1125	38	17	15	27	1.91
30745486--30745911	175	2.4	176	78	5	416	39	14	16	29	1.89
30745498--30745914	87	4.8	86	77	5	381	39	14	16	29	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226