genome.fa.s24.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  102  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31637420--31637521	29	3.6	27	78	11	98	34	24	3	37	1.74
31639021--31639361	76	4.5	74	85	6	472	28	16	18	36	1.92
31639021--31639361	151	2.3	148	88	2	495	28	16	18	36	1.92
31639237--31639479	122	2.0	121	91	2	389	29	15	15	39	1.88
31639358--31639847	76	6.4	76	83	4	553	27	16	18	38	1.92
31639021--31639711	350	2.0	343	88	3	1008	28	16	18	37	1.92
31640001--31640129	31	4.4	29	84	4	152	35	24	0	38	1.61
31640001--31640129	30	4.4	30	83	6	149	35	24	0	38	1.61
31640016--31640129	61	1.9	59	89	3	174	35	22	0	40	1.61
31640000--31640129	59	2.2	59	84	5	174	35	24	0	39	1.61
31640623--31640686	4	17.5	4	75	15	59	76	0	21	1	0.87
31640611--31640685	15	5.3	14	76	16	66	74	0	24	1	0.89
31640611--31640686	11	7.1	11	73	20	63	75	0	23	1	0.89
31640623--31640690	23	3.1	22	78	17	79	77	0	20	1	0.84
31640629--31640690	19	3.0	20	80	17	72	79	0	20	0	0.74
31640630--31640689	7	8.4	7	75	10	59	80	0	20	0	0.72
31640634--31640699	11	6.2	10	82	8	69	81	0	16	1	0.76
31640631--31640699	23	2.8	25	80	6	79	81	0	17	1	0.77
31649841--31651176	76	17.8	76	86	3	1801	28	16	20	33	1.95
31659254--31659465	76	2.7	77	87	5	284	27	16	20	35	1.94
31659254--31659505	76	3.3	77	81	8	268	27	16	19	36	1.93
31659666--31659808	30	4.8	30	78	9	132	37	22	2	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31659652--31659758	30	3.7	30	83	3	121	36	23	3	36	1.73
31660168--31660221	28	1.9	27	85	14	74	59	0	40	0	0.98
31660292--31660355	11	6.1	10	76	20	60	78	1	20	0	0.84
31660300--31660383	15	5.9	15	75	12	63	80	1	15	2	0.87
31660300--31660385	8	10.5	8	72	14	68	81	1	15	2	0.85
31660297--31660385	19	4.9	18	77	15	78	80	1	15	2	0.86
31660301--31660370	7	9.9	7	72	14	54	80	1	17	1	0.87
31660342--31660390	24	2.0	25	88	4	73	83	0	8	8	0.81
31660330--31660388	14	4.1	14	76	20	50	84	0	10	5	0.76
31660299--31660390	17	5.1	17	75	13	60	80	1	14	4	0.92
31664276--31664340	32	2.0	33	90	3	105	24	21	6	47	1.73
31685050--31685110	26	2.5	26	79	10	67	26	8	11	54	1.64
31687874--31687913	10	3.8	10	81	12	53	37	0	5	57	1.21
31697004--31697036	17	2.0	16	94	5	57	60	0	0	39	0.97
31698767--31699012	50	4.8	50	79	5	217	27	21	27	23	1.99
31698778--31698963	100	1.8	104	82	5	245	25	20	29	24	1.99
31704053--31704099	24	1.9	24	86	4	67	36	0	38	25	1.56
31704510--31704658	27	5.6	27	89	2	221	42	26	16	14	1.86
31709614--31709643	11	2.9	10	90	9	51	40	43	0	16	1.48
31710985--31711231	28	8.6	28	73	10	169	25	24	13	36	1.93
31710985--31711231	117	2.2	112	82	6	291	25	24	13	36	1.93
31716327--31716576	61	4.3	60	78	11	275	42	6	22	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31716348--31716493	30	4.8	30	71	5	105	43	5	21	29	1.75
31716449--31716547	51	1.9	51	89	0	153	41	6	24	28	1.78
31719396--31719427	16	2.0	16	93	0	55	71	0	0	28	0.86
31719537--31719595	10	5.8	10	82	4	55	59	1	3	35	1.24
31720597--31720645	20	2.4	21	80	10	57	40	2	4	53	1.32
31720745--31720790	10	4.7	10	83	2	58	34	0	0	65	0.93
31720745--31720785	20	2.0	20	90	9	66	31	0	0	68	0.90
31720754--31720797	20	2.2	20	83	0	52	34	0	2	63	1.07
31720801--31720830	13	2.3	13	100	0	60	13	0	0	86	0.57
31721143--31721181	16	2.4	16	86	4	51	56	0	5	38	1.22
31724080--31724117	18	2.0	19	90	10	60	55	2	0	42	1.14
31725381--31725407	3	9.0	3	100	0	54	33	0	0	66	0.92
31730405--31730534	43	3.0	44	76	14	137	32	28	16	23	1.96
31740496--31740533	20	1.9	20	94	0	67	34	0	7	57	1.28
31740971--31741012	21	2.0	22	90	4	68	26	0	0	73	0.83
31744627--31744736	33	3.3	33	74	12	100	25	11	44	18	1.83
31746758--31746942	99	1.9	99	88	2	282	58	15	1	24	1.45
31747476--31747501	12	2.2	12	100	0	52	15	23	19	42	1.89
31751818--31751856	14	2.8	14	88	0	60	35	10	23	30	1.88
31752322--31752373	15	3.2	15	73	19	50	44	0	1	53	1.11
31758611--31758636	12	2.2	12	100	0	52	34	7	15	42	1.75
31758628--31758674	23	2.0	24	87	4	69	38	6	17	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31758991--31759026	3	12.0	3	87	0	54	30	2	2	63	1.22
31759150--31759193	17	2.6	17	85	3	63	40	11	0	47	1.39
31759355--31759411	30	1.9	30	89	7	89	35	3	3	57	1.33
31764610--31764896	44	6.5	45	80	3	296	28	16	25	30	1.96
31764610--31764888	132	2.1	133	93	0	488	29	15	25	29	1.96
31764879--31765187	88	3.6	86	81	7	353	28	29	22	20	1.98
31764967--31765126	79	2.0	79	93	0	275	24	31	25	18	1.98
31764879--31765187	167	1.9	167	85	0	429	28	29	22	20	1.98
31765187--31765396	44	4.8	44	82	3	262	26	17	26	29	1.98
31766183--31766208	12	2.2	12	100	0	52	34	7	15	42	1.75
31766195--31766242	19	2.4	20	93	6	80	37	10	14	37	1.81
31766200--31766265	19	3.0	22	82	12	66	37	7	16	37	1.77
31766539--31766606	20	3.3	21	75	18	63	26	1	1	70	1.04
31766739--31766782	17	2.6	17	85	3	63	40	11	0	47	1.39
31766947--31767003	30	1.9	30	89	7	89	35	3	3	57	1.33
31769664--31769699	16	2.4	14	86	13	54	55	8	2	33	1.44
31769732--31769780	17	2.8	17	85	14	57	46	2	2	48	1.25
31772689--31772720	16	2.0	16	93	0	55	25	0	9	65	1.22
31777155--31777187	11	3.0	11	91	8	50	72	0	0	27	0.85
31780808--31780863	7	7.7	7	80	7	58	85	8	3	1	0.78
31780806--31780849	10	4.5	10	85	5	63	88	9	2	0	0.59
31780805--31780863	19	2.9	19	82	12	66	84	10	3	1	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31780806--31780863	22	2.7	21	84	7	71	86	8	3	1	0.76
31782218--31782605	143	2.7	141	82	5	429	31	20	20	26	1.98
31782551--31782844	90	3.3	90	68	10	233	32	19	19	29	1.96
31782543--31782899	179	2.0	179	86	1	502	32	20	19	28	1.96
31787785--31787845	30	2.0	30	100	0	122	27	16	13	42	1.85
31788457--31788507	7	6.7	7	79	16	57	84	11	3	0	0.75
31788455--31788493	17	2.3	17	95	0	69	87	10	2	0	0.65
31789203--31789241	17	2.3	18	86	8	55	30	12	7	48	1.69
31789801--31790303	143	3.5	141	84	2	637	28	19	23	28	1.98
31790280--31790810	44	11.9	44	70	7	248	31	20	19	27	1.97
31790274--31790810	179	3.0	178	89	2	826	31	20	20	27	1.97
31791085--31791131	24	2.0	24	87	4	69	51	31	4	12	1.59
31792783--31794011	613	2.0	610	96	0	2269	37	11	12	38	1.79
31794005--31794035	15	2.1	15	100	0	62	41	6	6	45	1.55
31794103--31794155	25	2.0	27	82	13	67	54	5	5	33	1.47
31797006--31797037	15	2.1	15	100	0	64	40	28	6	25	1.79
31797041--31797181	44	3.1	44	90	7	228	26	11	30	31	1.91
31797029--31797175	48	3.1	47	88	7	228	26	12	28	31	1.93
31800470--31800605	50	2.7	51	82	8	170	25	16	26	30	1.97
31800704--31800747	23	1.9	22	82	17	54	38	0	25	36	1.56
31802391--31802435	21	2.1	22	84	12	58	42	0	37	20	1.52
31802367--31802426	30	2.0	30	83	3	77	43	0	36	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31807902--31807931	16	1.9	16	93	6	53	50	20	0	30	1.49
31808381--31808422	20	2.2	19	87	12	59	16	21	2	59	1.48
31808398--31808428	16	2.0	16	93	6	55	19	25	0	54	1.44
31809068--31809135	25	2.7	25	90	0	109	32	19	23	25	1.97
31811802--31811843	3	14.3	3	95	5	77	30	0	0	69	0.89
31817533--31817557	6	4.2	6	100	0	50	48	0	0	52	1.00
31828209--31828292	27	3.1	27	84	6	91	26	19	17	36	1.94
31828243--31828361	27	4.4	27	84	4	150	21	15	16	46	1.84
31832100--31832129	15	1.9	16	93	6	53	56	0	0	43	0.99
31847241--31847282	22	1.9	22	100	0	84	35	19	0	45	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226