genome.fa.s24.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  182  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55297085--55297157	18	4.1	18	79	11	78	38	19	41	1	1.60
55297085--55297157	17	4.1	18	81	15	80	38	19	41	1	1.60
55297628--55297868	40	5.9	41	82	8	294	22	22	20	33	1.97
55297606--55297865	81	3.2	81	84	10	309	22	22	21	33	1.97
55299277--55299576	145	2.0	149	94	4	529	23	13	18	45	1.85
55299821--55300012	43	4.5	43	82	2	226	26	16	27	30	1.97
55302099--55302197	40	2.5	39	90	3	153	39	24	21	15	1.91
55302203--55302363	41	3.9	41	79	6	157	23	19	26	31	1.98
55302886--55303045	69	2.3	70	90	6	256	27	0	28	43	1.55
55303013--55303057	7	6.4	7	86	0	54	22	0	44	33	1.53
55303013--55303080	21	3.2	21	75	10	66	23	0	41	35	1.55
55306366--55306486	59	2.1	59	96	0	224	33	4	7	54	1.50
55306664--55306884	43	5.2	43	88	0	309	23	16	32	27	1.96
55318417--55318465	20	2.5	19	86	3	71	28	30	0	40	1.57
55318370--55318506	73	1.9	74	84	7	190	22	31	0	45	1.53
55318417--55318460	20	2.2	20	92	4	72	31	29	0	38	1.58
55318477--55318512	18	1.9	19	94	5	65	25	38	0	36	1.56
55321068--55321160	44	2.1	44	97	0	177	33	3	21	41	1.69
55321068--55321138	22	3.2	22	63	21	58	35	2	21	40	1.68
55321090--55321160	22	3.2	22	65	21	58	32	4	21	42	1.72
55323045--55323091	25	1.9	25	86	4	69	46	14	12	25	1.80
55324760--55324802	21	2.0	21	95	0	77	13	20	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55324782--55324890	40	2.7	39	80	6	121	16	16	26	40	1.89
55324781--55324876	40	2.4	39	82	5	122	17	17	25	39	1.91
55326450--55326559	55	2.0	54	80	5	123	20	26	33	19	1.96
55328367--55328420	27	2.0	27	92	0	90	24	11	25	38	1.88
55334247--55334348	52	2.0	51	88	1	150	24	14	31	29	1.95
55337858--55337974	52	2.3	51	89	4	173	27	12	30	29	1.93
55337859--55337974	51	2.2	52	89	4	173	27	12	31	28	1.93
55341181--55341216	17	2.1	18	94	5	65	52	2	22	22	1.59
55343358--55343446	29	3.0	29	78	12	110	50	2	11	35	1.51
55344252--55344284	6	5.5	6	86	13	50	84	0	3	12	0.72
55347282--55347314	17	1.9	17	93	0	57	39	9	27	24	1.85
55347830--55347881	27	1.9	27	100	0	104	40	23	3	32	1.72
55348531--55348573	20	2.2	19	84	12	52	76	0	20	2	0.89
55348542--55348579	19	2.0	20	84	5	51	68	5	26	0	1.11
55366221--55366310	40	2.2	40	80	0	99	37	25	20	16	1.93
55368574--55368764	73	2.6	73	87	0	256	27	23	25	24	2.00
55369826--55369876	24	2.1	24	92	0	84	37	17	23	21	1.94
55376421--55376458	7	5.4	7	96	0	67	57	2	10	28	1.45
55376629--55376683	10	5.6	10	75	12	51	60	1	5	32	1.30
55376619--55376694	29	2.6	28	81	6	89	59	1	5	34	1.28
55378122--55378178	28	2.0	28	100	0	114	14	3	24	57	1.52
55380432--55380483	24	2.2	24	80	13	63	46	21	19	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55383908--55383939	7	4.6	7	96	0	55	53	0	0	46	1.00
55384015--55384097	21	3.8	21	77	16	87	36	1	0	62	1.03
55384021--55384101	11	7.2	11	75	15	60	34	1	0	64	1.02
55384018--55384108	11	8.2	11	70	22	57	34	2	0	63	1.06
55383964--55384120	63	2.5	65	74	18	152	33	3	1	61	1.22
55384086--55384122	19	1.9	19	88	0	56	24	5	0	70	1.08
55398678--55398712	2	17.5	2	87	0	52	51	42	0	5	1.25
55415960--55416064	52	2.0	52	88	3	158	39	2	8	49	1.48
55417463--55417491	12	2.3	13	94	5	51	13	24	3	58	1.51
55421335--55421395	30	2.0	30	93	0	104	55	4	16	22	1.60
55425964--55426129	81	2.0	81	98	0	323	53	7	5	34	1.52
55429642--55429806	43	3.9	43	75	12	153	24	18	26	30	1.97
55436884--55437162	26	10.9	25	70	18	175	30	2	2	64	1.23
55436924--55437065	35	3.9	34	70	15	81	31	3	2	62	1.24
55436947--55436988	21	2.0	21	86	4	59	35	2	0	61	1.09
55436890--55437022	51	2.7	48	85	8	144	32	2	1	63	1.15
55436884--55437162	49	5.5	50	74	17	218	30	2	2	64	1.23
55437050--55437172	48	2.5	51	79	12	159	30	3	3	63	1.26
55437074--55437198	48	2.8	43	82	11	146	29	3	4	63	1.28
55440886--55440924	19	2.0	20	90	5	62	28	23	5	43	1.75
55449035--55449468	44	9.7	43	69	15	184	32	16	19	31	1.94
55449030--55449457	225	1.9	225	90	0	687	32	17	18	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55451047--55451197	26	6.1	25	78	8	150	30	2	3	63	1.24
55451053--55451332	26	12.0	22	67	21	83	29	2	3	63	1.25
55451053--55451335	48	6.0	49	72	18	187	29	2	3	63	1.26
55451053--55451220	26	6.8	24	80	11	139	29	2	3	64	1.22
55451177--55451257	38	2.1	38	86	8	121	27	2	3	66	1.21
55451222--55451303	22	3.6	21	72	16	65	26	2	4	65	1.25
55451279--55451325	23	2.1	22	84	4	58	29	4	4	61	1.34
55451319--55451359	17	2.6	16	84	7	57	34	4	0	60	1.18
55454970--55455018	26	2.0	24	84	8	62	63	8	0	28	1.23
55454998--55455049	22	2.4	22	84	9	63	69	7	1	21	1.24
55463133--55463296	27	6.1	27	90	4	242	42	21	17	18	1.90
55464868--55464911	15	3.0	14	83	6	52	54	4	2	38	1.33
55464998--55465153	24	6.4	24	73	6	109	57	7	4	30	1.46
55465246--55465321	3	25.0	3	72	17	59	61	1	3	32	1.22
55465246--55465328	15	6.0	13	77	17	71	63	1	3	31	1.19
55465262--55465315	22	2.2	26	84	12	71	62	0	5	31	1.18
55465247--55465333	12	7.2	11	78	16	59	65	2	3	28	1.21
55465247--55465328	40	2.1	37	82	10	94	64	1	3	30	1.18
55466456--55466491	16	2.3	16	95	4	65	16	0	11	72	1.12
55470947--55471539	292	2.0	292	99	0	1179	36	18	12	32	1.88
55487903--55487952	24	2.1	23	85	3	64	58	4	0	38	1.17
55488311--55488336	9	2.9	9	100	0	52	23	0	7	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55489039--55489165	67	1.9	67	83	6	166	59	3	7	29	1.41
55489207--55489254	17	2.7	19	78	15	57	68	4	4	22	1.24
55489374--55489399	9	2.9	9	100	0	52	69	0	7	23	1.14
55492868--55492931	31	2.1	31	100	0	128	29	26	6	37	1.81
55494096--55494399	113	2.7	112	78	8	321	26	21	23	27	1.99
55494208--55494690	187	2.6	185	83	4	546	26	22	23	28	1.99
55494911--55495004	21	4.3	22	70	17	61	23	0	37	39	1.55
55497550--55497651	31	3.3	31	94	1	170	19	17	22	40	1.92
55498439--55498530	45	2.0	46	83	10	118	47	1	2	48	1.20
55498527--55498612	29	3.1	28	70	14	79	45	2	2	50	1.27
55498494--55498628	55	2.4	57	82	6	159	45	2	2	49	1.29
55498652--55498971	9	36.4	9	74	14	258	45	21	0	32	1.58
55498653--55498971	43	7.5	43	69	19	134	45	21	0	31	1.58
55498873--55498982	51	2.1	52	86	5	152	42	19	2	35	1.65
55504472--55504542	21	3.4	21	92	0	115	30	18	45	5	1.72
55504842--55504999	42	3.8	42	89	3	255	35	22	20	21	1.96
55504842--55504999	84	1.9	84	95	0	289	35	22	20	21	1.96
55505000--55505098	42	2.3	43	91	3	157	20	22	22	35	1.96
55505792--55505845	27	2.0	27	96	0	99	25	20	7	46	1.77
55509120--55509170	27	1.9	26	88	11	77	43	3	5	47	1.46
55509394--55509579	92	2.0	92	100	0	372	39	12	12	34	1.82
55509896--55510071	43	4.1	43	85	7	232	26	27	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55510422--55510552	66	2.0	66	90	0	208	16	23	19	41	1.90
55513120--55513241	9	14.4	9	79	13	125	34	0	18	46	1.55
55513124--55513241	25	4.7	25	89	0	173	34	0	18	45	1.56
55513120--55513241	50	2.4	50	90	0	199	34	0	18	46	1.55
55513120--55513241	16	7.2	17	75	17	112	34	0	18	46	1.55
55513120--55513372	50	5.1	49	73	13	184	30	1	18	49	1.55
55513291--55513360	12	6.0	12	81	6	90	31	1	17	50	1.55
55513281--55513355	34	2.2	33	81	11	89	29	1	17	52	1.53
55513460--55513509	9	5.9	9	75	11	52	44	2	14	40	1.56
55517963--55518031	16	4.4	16	67	20	56	50	21	1	26	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226