genome.fa.s24.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  121  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37456519--37457632	219	5.1	216	78	8	760	31	19	20	28	1.97
37457307--37457895	307	1.9	307	83	3	756	33	19	19	27	1.96
37457624--37458114	219	2.2	218	80	4	538	35	17	19	27	1.94
37457581--37458594	480	2.1	482	87	1	1462	34	18	19	27	1.96
37458091--37458715	219	2.9	218	90	0	955	32	19	19	28	1.96
37458582--37458859	85	3.2	84	68	12	231	32	17	20	30	1.95
37458528--37458893	175	2.1	175	88	2	538	31	19	19	30	1.96
37458067--37458775	219	3.3	219	86	1	935	32	19	20	27	1.97
37458528--37458955	175	2.4	174	85	4	522	31	18	20	29	1.97
37458707--37459788	263	4.1	263	73	8	978	33	19	19	27	1.96
37458707--37459279	307	1.9	307	84	2	767	33	19	19	27	1.96
37458965--37459996	482	2.1	482	87	1	1476	33	19	19	27	1.96
37459024--37459514	219	2.2	218	79	5	549	35	17	19	27	1.95
37459491--37460117	219	2.9	218	90	0	984	32	19	19	28	1.96
37459982--37460261	85	3.2	85	70	11	262	31	17	20	30	1.96
37459930--37460300	175	2.1	175	88	1	555	31	19	19	29	1.97
37458984--37460131	482	2.4	480	83	4	1256	33	18	19	27	1.96
37459467--37460177	219	3.3	219	86	1	944	32	19	20	27	1.97
37460109--37461176	263	4.1	263	73	9	988	33	18	20	27	1.96
37459401--37460434	219	4.7	216	78	9	719	31	19	20	27	1.97
37460109--37460697	307	1.9	307	85	4	803	33	19	19	27	1.96
37460426--37460916	219	2.2	219	80	3	549	36	17	19	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37460383--37461397	482	2.1	481	87	1	1444	34	18	19	27	1.95
37460893--37461518	219	2.9	220	89	2	974	32	19	19	28	1.96
37461383--37461662	85	3.2	85	68	10	242	31	18	20	29	1.97
37461332--37461696	175	2.1	175	89	0	552	30	20	20	29	1.97
37460869--37461578	219	3.3	219	86	2	946	32	19	20	28	1.97
37461332--37461753	175	2.4	173	86	3	551	31	19	21	28	1.97
37461510--37462593	263	4.1	262	73	9	966	32	19	20	27	1.97
37461818--37462316	218	2.3	218	81	3	563	33	18	20	27	1.96
37462732--37463093	175	2.1	175	89	1	564	32	18	18	30	1.95
37462736--37463152	175	2.4	175	85	3	527	33	17	19	29	1.95
37462513--37463586	394	2.7	394	87	1	1537	33	18	20	28	1.96
37463126--37463548	175	2.4	175	87	1	580	33	18	20	27	1.96
37463178--37463457	85	3.2	85	69	10	260	33	17	21	28	1.96
37463825--37464429	307	2.0	307	85	3	815	32	18	20	27	1.96
37463301--37465214	526	3.6	526	95	0	3244	32	18	21	27	1.97
37464357--37464961	307	2.0	307	84	3	790	33	18	20	27	1.96
37463305--37465426	263	8.1	263	70	11	845	32	18	20	27	1.96
37464629--37465645	482	2.1	482	89	1	1529	32	18	20	28	1.96
37465140--37467298	658	3.3	654	82	5	2656	33	18	19	28	1.96
37466237--37467474	175	7.1	174	71	11	702	32	18	20	28	1.96
37466416--37466960	263	2.1	263	88	2	799	32	18	21	27	1.97
37467172--37467444	85	3.2	85	71	12	266	33	16	20	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37462298--37467300	219	22.8	219	77	9	2650	33	18	20	28	1.96
37466412--37467319	482	1.9	480	81	5	1109	32	18	20	28	1.96
37466893--37467866	393	2.5	393	90	1	1508	32	18	19	28	1.96
37467509--37467849	175	2.0	173	91	1	547	33	18	20	28	1.96
37452923--37467758	44	338.8	44	64	13	729	33	18	20	28	1.96
37467113--37467834	44	16.6	43	66	13	207	32	18	19	29	1.96
37467508--37467894	173	2.2	174	85	2	510	33	18	20	28	1.96
37467883--37468021	50	2.8	49	81	8	156	34	23	17	24	1.96
37469490--37469516	13	2.1	13	100	0	54	29	0	7	62	1.22
37469857--37469891	19	1.9	19	88	11	56	45	0	5	48	1.26
37488729--37488851	50	2.5	50	80	0	138	27	22	28	21	1.99
37495771--37495819	20	2.5	20	84	15	75	57	4	26	12	1.53
37499847--37499921	33	2.2	34	90	2	116	42	12	6	38	1.68
37508422--37508456	4	8.8	4	100	0	70	22	0	0	77	0.78
37508410--37508476	16	4.1	16	74	14	64	22	1	1	74	0.98
37508988--37509037	25	2.0	25	96	0	91	12	22	20	46	1.83
37524120--37524153	15	2.3	15	100	0	68	41	11	0	47	1.40
37529661--37530014	47	7.6	47	89	4	511	29	29	8	32	1.86
37529661--37530014	96	3.8	94	88	4	511	29	29	8	32	1.86
37537780--37537837	27	2.1	27	93	0	98	29	8	27	34	1.87
37543461--37544231	27	28.7	26	80	5	617	42	19	18	18	1.89
37543461--37544217	54	14.1	54	81	6	709	42	19	19	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37543461--37544217	81	9.4	81	80	5	692	42	19	19	18	1.89
37544608--37544733	28	4.4	28	80	7	135	24	23	23	28	1.99
37563344--37563404	30	2.0	30	100	0	122	44	19	6	29	1.76
37564741--37565021	142	2.0	142	99	0	553	45	11	17	26	1.81
37565101--37565141	22	1.9	21	95	5	73	41	17	7	34	1.77
37574599--37574679	41	2.0	41	87	0	117	35	13	27	23	1.92
37574702--37574764	33	1.9	33	93	0	108	33	11	31	23	1.90
37574657--37574795	74	1.9	74	81	3	172	31	15	28	23	1.96
37574735--37574821	41	2.1	41	85	4	113	29	17	28	24	1.97
37575924--37576090	51	3.3	48	75	8	172	23	17	27	31	1.97
37576327--37576358	16	2.0	16	93	0	55	59	0	15	25	1.36
37582366--37582397	16	2.0	16	93	0	55	59	0	15	25	1.36
37594691--37594763	34	2.1	34	87	0	101	34	30	4	31	1.77
37596535--37596574	21	1.9	21	85	10	55	40	7	25	27	1.82
37596941--37597953	506	2.0	506	99	0	2008	31	13	21	34	1.92
37599867--37599901	17	2.1	17	100	0	70	51	5	17	25	1.67
37601203--37601247	22	2.0	23	82	4	56	33	13	26	26	1.93
37604811--37604845	18	2.0	17	88	5	52	80	8	8	2	1.01
37605713--37605758	16	2.7	17	86	6	58	36	2	13	47	1.54
37616661--37616699	10	3.7	10	83	12	51	35	0	2	61	1.10
37627735--37627780	3	15.3	3	100	0	92	67	0	32	0	0.91
37630297--37630336	11	3.7	11	90	3	64	7	37	0	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37630306--37630342	11	2.9	13	84	15	51	8	37	0	54	1.30
37631561--37631850	146	2.0	143	90	2	454	43	4	30	21	1.72
37631763--37632389	316	2.0	316	93	0	1076	30	17	19	32	1.95
37632542--37632585	16	2.8	16	79	10	54	56	4	13	25	1.56
37641300--37641344	22	1.9	25	86	13	69	55	8	0	35	1.31
37671555--37671594	21	1.9	21	84	0	53	45	30	12	12	1.79
37686390--37686470	32	2.5	32	81	0	90	32	7	22	38	1.82
37688413--37688474	31	2.0	31	100	0	124	41	16	9	32	1.80
37692507--37692943	47	9.1	48	87	6	618	31	8	30	29	1.86
37692507--37692943	191	2.3	191	89	4	646	31	8	30	29	1.86
37698778--37698840	31	2.0	32	96	3	119	42	15	9	31	1.79
37700400--37700438	18	2.1	19	85	9	53	41	0	15	43	1.46
37704282--37704544	40	6.6	40	87	3	316	24	20	28	26	1.99
37704321--37704579	80	3.3	80	84	3	238	25	20	28	25	1.99
37712219--37712481	40	6.6	40	87	3	316	24	20	28	26	1.99
37712258--37712516	80	3.3	80	84	3	238	25	20	28	25	1.99
37725974--37726016	20	2.2	20	87	4	61	34	4	6	53	1.49
37725978--37726024	19	2.4	19	83	13	60	36	4	6	53	1.46
37736611--37736962	44	7.5	45	68	16	171	32	19	21	26	1.97
37736597--37736777	98	1.8	98	80	4	213	32	19	20	27	1.97
37736738--37736919	98	1.9	98	82	4	233	31	20	20	26	1.97
37736558--37736981	142	3.0	142	95	0	742	33	19	21	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37737377--37737410	17	1.9	17	88	5	50	29	38	11	20	1.88
37738789--37738831	20	2.2	20	87	4	61	34	6	6	51	1.56
37738793--37738839	19	2.4	19	83	13	60	36	6	6	51	1.53
37744560--37744769	27	7.8	27	84	2	224	30	28	12	29	1.93
37744538--37744769	54	4.3	54	85	1	259	31	27	12	28	1.92
37744560--37744769	81	2.6	81	86	1	287	30	28	12	29	1.93
37749003--37749045	16	2.7	16	88	0	68	11	25	6	55	1.60
37750253--37750304	24	2.2	24	100	0	104	38	9	7	44	1.66
37753194--37753234	17	2.4	17	84	8	57	46	7	21	24	1.77
37753486--37753642	77	2.0	77	100	0	314	32	12	12	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226