Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  193  of  226  ( 27070 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58281202--58281248
24
2.0
24
84
16
62
51
14
0
34
1.43
58281914--58281945
16
2.1
15
94
5
55
0
28
0
71
0.86
58282044--58282082
20
2.0
20
95
5
71
43
5
0
51
1.24
58282047--58282097
21
2.5
20
84
6
59
39
7
1
50
1.42
58282406--58282446
21
2.0
21
85
0
55
24
9
2
63
1.37
58283088--58283154
23
3.0
22
78
10
73
31
1
1
65
1.10
58283092--58283165
22
3.3
23
76
10
73
32
1
1
64
1.10
58290881--58290915
11
3.2
11
88
11
54
0
54
0
45
0.99
58291394--58291418
3
8.3
3
100
0
50
32
0
0
68
0.90
58291381--58291622
123
2.0
123
83
8
314
30
6
6
56
1.49
58302005--58302179
71
2.5
69
83
4
192
28
14
22
34
1.93
58302196--58302535
76
4.5
75
85
6
429
32
15
20
31
1.93
58302842--58303174
73
4.5
72
84
7
384
31
18
18
32
1.94
58302826--58303174
147
2.3
149
83
8
444
31
17
17
33
1.94
58304278--58304320
10
4.4
9
83
13
50
81
4
2
11
0.93
58304278--58304320
19
2.2
20
87
4
61
81
4
2
11
0.93
58304393--58304427
11
3.2
11
95
0
61
0
51
0
48
1.00
58305430--58305456
11
2.5
11
100
0
54
29
7
7
55
1.55
58307141--58307486
47
7.3
47
90
2
455
27
30
9
32
1.88
58311497--58311565
32
2.2
32
79
7
79
47
1
2
47
1.25
58311569--58311642
11
6.7
11
71
10
53
72
1
21
4
1.08
58311591--58311649
29
2.0
29
83
6
75
69
1
25
3
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58312473--58312613
40
3.6
39
73
10
110
28
17
21
32
1.96
58316105--58316148
14
3.1
15
78
21
51
72
0
6
20
1.07
58316125--58316534
157
2.6
156
88
5
587
55
8
9
25
1.61
58316614--58316647
16
2.1
16
88
0
50
32
11
0
55
1.36
58319670--58319760
43
2.1
44
95
2
166
48
17
6
27
1.72
58323157--58323329
73
2.4
74
81
10
214
39
1
33
25
1.63
58323278--58323327
19
2.7
19
93
3
84
44
0
28
28
1.55
58326994--58327061
20
3.4
20
80
8
75
32
8
23
35
1.86
58326987--58327078
40
2.3
40
76
10
98
32
9
22
34
1.87
58328291--58328332
21
2.0
21
90
4
68
4
21
2
71
1.16
58332551--58332586
17
2.1
17
89
5
54
19
2
11
66
1.35
58336600--58336642
21
2.0
21
86
8
61
34
0
6
58
1.25
58338149--58338192
20
2.2
21
84
12
65
40
0
2
56
1.11
58339682--58339720
19
2.0
19
85
5
51
30
0
5
64
1.15
58350852--58350884
16
2.0
17
94
5
59
66
3
0
30
1.06
58351439--58351484
23
2.0
23
87
8
67
45
10
0
43
1.39
58351484--58351543
20
2.8
22
78
17
72
43
0
1
55
1.10
58352539--58352597
16
3.7
15
84
8
73
37
1
28
32
1.67
58354813--58354933
52
2.4
51
87
4
172
38
22
12
26
1.89
58354813--58354933
26
4.7
26
84
5
156
38
22
12
26
1.89
58355311--58355368
28
2.1
28
83
0
71
20
22
22
34
1.97
58355682--58355727
23
2.0
24
87
12
69
34
19
4
41
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58358944--58358994
22
2.4
21
75
18
52
66
3
5
23
1.30
58359759--58359807
17
2.8
17
84
6
62
14
2
2
81
0.87
58359756--58359807
8
6.2
8
85
10
61
13
1
1
82
0.84
58361053--58361302
72
3.4
72
91
3
385
31
18
17
33
1.94
58361235--58361481
88
2.8
87
84
5
291
34
19
17
28
1.94
58361703--58362060
76
4.8
73
82
8
391
34
19
15
30
1.92
58361703--58362060
148
2.4
149
82
6
429
34
19
15
30
1.92
58362060--58362235
71
2.5
70
85
3
212
34
22
14
28
1.94
58369146--58369175
8
3.6
8
91
8
51
20
0
3
76
0.92
58370421--58370700
140
2.0
140
95
1
499
40
14
15
30
1.87
58371474--58371503
15
2.0
15
93
0
51
33
3
6
56
1.42
58374280--58374306
13
2.1
13
100
0
54
22
22
14
40
1.90
58377767--58377805
19
2.1
19
100
0
78
20
20
15
43
1.88
58380878--58380917
16
2.5
16
91
0
62
32
27
2
37
1.70
58385838--58385875
18
2.1
18
90
0
58
47
10
10
31
1.72
58385954--58386058
9
11.0
9
70
13
50
58
3
2
35
1.31
58394942--58394970
15
1.9
15
100
0
58
34
17
6
41
1.76
58395830--58395966
63
2.2
63
84
2
168
21
32
21
24
1.98
58397554--58397591
20
1.9
19
89
5
58
65
0
5
28
1.14
58400623--58400649
4
6.8
4
100
0
54
25
22
25
25
2.00
58408033--58408236
86
2.4
84
80
9
218
24
17
27
30
1.97
58408032--58408234
43
4.7
43
80
11
195
24
17
28
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58408068--58408240
85
2.0
85
81
9
210
24
17
27
29
1.98
58412471--58412507
17
2.2
17
90
4
58
54
2
0
43
1.14
58412479--58412514
18
2.1
18
94
5
65
47
0
0
52
1.00
58415792--58415835
3
14.7
3
95
0
79
31
36
0
31
1.58
58418756--58418811
29
1.9
29
92
0
94
14
5
35
44
1.68
58425924--58425968
24
1.9
23
82
13
56
24
0
17
57
1.40
58426000--58426042
20
2.2
19
84
12
52
32
4
0
62
1.15
58433156--58433196
21
2.1
19
86
9
55
26
0
7
65
1.18
58436795--58436843
22
2.3
20
80
13
53
26
12
0
61
1.31
58443966--58444024
26
2.3
26
80
11
70
25
8
25
40
1.83
58447736--58447910
51
3.4
49
78
6
179
24
17
27
30
1.97
58447834--58447914
26
3.2
26
61
22
62
22
13
29
34
1.92
58447916--58448008
45
2.1
45
89
0
141
29
20
19
31
1.97
58451105--58451137
4
8.2
4
87
12
50
78
0
0
21
0.75
58455165--58455257
11
8.8
11
73
9
86
21
30
3
45
1.68
58455191--58455270
40
2.0
40
87
0
115
25
27
3
43
1.71
58460292--58460349
25
2.3
25
82
8
64
56
0
0
43
0.99
58461552--58461578
13
2.1
13
100
0
54
37
18
22
22
1.95
58464200--58464248
15
3.3
15
74
5
55
59
4
4
32
1.35
58469120--58469159
19
2.0
21
85
9
57
22
27
0
50
1.50
58472810--58472886
38
2.0
38
82
9
95
29
2
37
29
1.71
58478831--58478922
39
2.4
37
80
7
96
31
28
19
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58482579--58482653
38
2.0
38
89
0
114
33
1
36
29
1.66
58483605--58483648
11
4.2
11
85
11
65
18
6
27
47
1.73
58483618--58483692
9
8.2
9
88
8
98
21
9
28
41
1.84
58483610--58483694
20
4.5
20
86
7
108
21
8
28
42
1.81
58493192--58493246
22
2.5
22
93
0
92
50
12
25
10
1.73
58497330--58497368
19
2.1
19
85
9
53
61
0
2
35
1.10
58497325--58497426
43
2.5
40
77
11
107
60
0
2
36
1.12
58497995--58498184
11
18.2
11
66
23
65
60
0
2
36
1.11
58498028--58498193
41
4.1
40
88
6
228
61
0
2
36
1.09
58498053--58498184
11
12.5
11
68
20
68
61
0
3
35
1.12
58498028--58498195
81
2.1
81
86
5
241
61
0
2
36
1.09
58498090--58498193
51
2.1
50
87
12
151
64
0
2
32
1.08
58507148--58507205
23
2.6
23
83
8
66
18
8
5
67
1.37
58511771--58511816
11
4.5
11
75
25
55
73
0
26
0
0.83
58511769--58511816
15
3.5
13
81
18
53
72
0
27
0
0.84
58511770--58511827
13
4.2
13
76
18
55
75
0
22
1
0.89
58512074--58512171
40
2.6
38
85
7
121
33
4
7
55
1.46
58512147--58512177
3
10.3
3
100
0
62
32
0
0
67
0.91
58515055--58515096
8
5.4
8
85
5
59
23
0
26
50
1.50
58517649--58517678
16
1.9
15
93
6
51
20
3
6
70
1.25
58517414--58517827
160
2.6
159
89
3
618
28
8
9
53
1.62
58517830--58517879
16
3.2
16
70
13
50
22
8
4
66
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58518194--58518238
10
4.5
10
80
0
54
0
28
0
71
0.87
58518109--58518224
45
2.6
43
74
12
110
1
37
1
58
1.18
58518203--58518245
20
2.2
20
91
0
68
0
34
0
65
0.93
58518290--58518354
27
2.4
27
84
0
76
9
35
30
24
1.87
58518547--58518588
19
2.3
18
84
15
52
35
0
14
50
1.43
58523205--58523274
31
2.3
31
92
0
113
38
14
7
40
1.73
58525223--58525255
2
16.5
2
100
0
66
51
0
0
48
1.00
58528902--58528951
24
2.0
24
84
7
64
60
0
0
40
0.97
58530928--58530974
19
2.4
21
75
17
55
25
0
6
68
1.13
58531692--58531765
37
1.9
39
83
5
98
48
2
1
47
1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226