genome.fa.s24.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  113  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35227993--35228215	40	5.7	40	87	6	287	24	21	27	26	1.99
35231892--35231945	24	2.2	24	90	3	81	46	25	9	18	1.79
35233733--35233836	42	2.5	42	85	0	136	39	23	13	24	1.90
35233839--35234029	41	4.7	41	84	5	244	21	23	20	34	1.97
35239924--35240450	257	2.0	258	92	0	876	36	21	11	30	1.89
35244710--35244742	17	2.0	17	88	5	50	45	30	0	24	1.53
35246126--35246179	28	1.9	28	81	7	65	62	3	1	31	1.23
35247781--35247854	24	3.2	24	72	24	77	48	5	37	8	1.56
35247804--35247885	21	3.7	21	73	17	76	48	6	39	6	1.53
35247781--35247886	46	2.3	46	96	1	196	49	5	38	6	1.53
35247941--35248007	18	3.8	17	71	15	55	20	0	19	59	1.38
35251821--35252226	30	13.6	30	78	8	328	23	23	14	39	1.91
35251827--35252051	89	2.5	89	94	0	378	20	24	14	40	1.90
35259568--35259644	28	2.7	29	78	13	86	20	28	5	45	1.73
35259534--35259666	30	4.5	29	71	20	89	21	28	10	39	1.87
35259594--35259715	29	4.2	29	73	13	79	19	28	12	39	1.88
35262674--35262720	22	2.1	23	84	11	62	23	2	8	65	1.31
35262674--35262720	21	2.1	23	81	14	55	23	2	8	65	1.31
35263744--35263798	27	2.1	25	83	6	65	20	10	10	58	1.62
35263979--35264034	13	4.2	13	77	11	51	19	8	0	71	1.12
35266057--35266104	25	2.0	24	87	4	69	25	18	6	50	1.70
35268471--35268509	18	2.0	20	85	9	55	28	12	10	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35268836--35268868	14	2.3	15	89	5	50	21	3	9	66	1.33
35269171--35269218	25	1.9	25	95	0	87	27	6	29	37	1.81
35269388--35269436	25	2.0	25	91	0	80	36	14	16	32	1.89
35269386--35269452	25	2.7	25	80	0	71	37	13	19	29	1.90
35275808--35275966	78	2.0	78	96	0	291	33	11	13	41	1.80
35276903--35276952	24	2.1	24	100	0	100	32	20	24	24	1.98
35279833--35279867	17	2.1	17	89	10	54	20	14	0	65	1.26
35280837--35280871	16	2.1	17	89	5	54	82	2	8	5	0.91
35286498--35286548	18	2.9	18	77	13	52	45	1	1	50	1.24
35287330--35287367	16	2.4	16	90	0	67	21	7	15	55	1.66
35292639--35292673	18	2.1	16	89	10	52	51	20	0	28	1.47
35293587--35293624	19	2.1	19	85	9	53	50	21	0	28	1.49
35294361--35294641	86	3.3	86	77	4	273	41	20	16	21	1.90
35294405--35294762	43	8.4	43	67	10	135	40	22	17	20	1.91
35297267--35297297	15	2.1	15	100	0	62	38	0	25	35	1.56
35302381--35302459	37	2.1	37	90	0	122	25	32	18	22	1.97
35302578--35302800	47	4.7	47	91	1	331	27	30	8	32	1.88
35308129--35308204	11	6.8	11	72	26	54	55	1	2	40	1.22
35311222--35311262	16	2.6	16	96	0	73	46	4	2	46	1.37
35314928--35314956	13	2.1	14	93	6	51	27	20	20	31	1.98
35319705--35319742	19	2.0	20	89	5	60	31	2	0	65	1.06
35319950--35320029	42	1.9	42	89	0	124	37	1	8	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35321165--35321198	16	2.1	16	88	0	50	70	2	0	26	1.01
35321327--35321398	36	1.9	39	86	8	105	36	6	0	56	1.26
35321732--35321776	20	2.2	20	80	7	56	24	11	20	44	1.83
35324147--35324198	26	2.0	26	92	0	86	28	34	21	15	1.94
35324159--35324309	72	2.1	71	91	2	241	30	29	16	23	1.96
35324228--35324451	104	2.2	104	93	1	378	31	31	19	17	1.95
35324780--35324843	30	2.2	29	81	10	76	29	28	6	35	1.82
35324787--35324843	30	1.9	30	85	3	80	29	24	7	38	1.82
35331063--35331114	26	2.0	26	92	0	86	28	34	21	15	1.94
35331075--35331224	70	2.1	71	92	1	248	30	30	16	23	1.96
35331144--35331366	104	2.2	103	91	2	358	31	31	18	17	1.95
35331694--35331757	30	2.2	29	81	10	76	29	28	6	35	1.82
35331701--35331757	30	1.9	30	85	3	80	29	24	7	38	1.82
35332617--35332667	21	2.3	22	77	19	52	58	0	1	39	1.09
35348369--35348413	3	15.0	3	95	0	81	68	0	31	0	0.89
35352514--35352856	169	2.0	170	98	0	670	35	12	21	30	1.91
35356575--35356607	6	5.7	6	89	7	50	54	9	18	18	1.69
35361118--35361155	18	2.1	18	100	0	76	47	15	5	31	1.68
35365034--35365076	18	2.3	18	88	4	59	37	2	2	58	1.24
35365289--35365326	16	2.3	17	81	9	51	71	13	7	7	1.31
35368967--35369013	20	2.3	20	88	0	76	14	21	17	46	1.83
35370205--35370278	22	3.4	22	65	26	57	43	17	9	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35370184--35370294	44	2.6	43	89	2	177	43	17	10	28	1.82
35371269--35371337	21	3.3	21	67	25	65	27	33	4	34	1.77
35371270--35371371	41	2.5	41	100	0	204	27	29	4	38	1.77
35371291--35371357	20	3.3	20	66	25	59	26	29	4	38	1.76
35380665--35380716	10	5.0	10	80	17	52	59	5	1	32	1.32
35383280--35383386	49	2.1	50	86	5	153	32	16	23	27	1.96
35383514--35383698	59	3.2	59	82	7	225	34	13	27	25	1.93
35383510--35383740	116	2.0	116	80	1	257	35	13	24	25	1.92
35388510--35388567	28	2.1	28	83	0	71	27	13	15	43	1.85
35396488--35396660	79	2.2	81	86	6	237	26	21	26	24	2.00
35396435--35396660	40	5.7	40	85	6	264	26	22	26	24	2.00
35396488--35396693	79	2.6	79	81	8	197	28	21	25	24	1.99
35398289--35399245	50	19.2	50	77	0	903	25	20	22	31	1.98
35398302--35399231	100	9.3	100	92	0	1484	25	20	21	31	1.98
35403191--35403256	27	2.5	27	85	4	82	34	24	19	21	1.96
35406004--35406188	50	3.6	50	83	4	208	22	29	21	25	1.99
35413531--35413707	50	3.6	49	80	5	171	20	25	23	30	1.98
35418033--35418083	26	1.9	27	81	18	63	21	29	21	27	1.99
35426633--35426662	3	10.0	3	92	0	51	0	30	33	36	1.58
35429048--35429099	3	17.3	3	100	0	104	67	0	0	32	0.91
35430010--35430232	43	5.2	43	82	4	227	29	30	16	23	1.96
35430011--35430232	86	2.6	87	82	2	261	29	31	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35432240--35432269	15	2.0	15	100	0	60	60	20	6	13	1.55
35435083--35435136	14	3.8	14	82	2	72	27	51	1	18	1.56
35435083--35435136	21	2.5	21	81	3	72	27	51	1	18	1.56
35435249--35435300	7	7.4	7	88	0	77	32	48	0	19	1.49
35435241--35435300	21	2.8	20	82	9	75	31	46	0	21	1.52
35435290--35435469	87	2.0	89	87	4	258	45	26	0	28	1.58
35435488--35435519	7	4.6	7	92	0	55	28	53	3	15	1.57
35435620--35435656	14	2.6	14	91	0	56	45	32	0	21	1.52
35435917--35436189	41	6.7	41	89	0	411	30	24	20	24	1.98
35448055--35448176	23	5.3	23	88	0	181	29	26	22	22	1.99
35448399--35448439	18	2.3	18	88	12	59	43	19	0	36	1.51
35456338--35456366	12	2.3	13	94	5	51	62	13	10	13	1.55
35465050--35465145	46	2.1	46	84	3	122	32	22	21	22	1.98
35469709--35469736	14	2.0	14	100	0	56	64	0	0	35	0.94
35469758--35469801	23	1.9	23	85	0	61	63	4	4	27	1.33
35470263--35470293	6	5.2	6	96	0	53	16	32	16	35	1.91
35471402--35471435	15	2.3	15	100	0	68	14	11	38	35	1.83
35472569--35472615	23	2.0	23	100	0	94	29	17	17	36	1.92
35479421--35479461	21	2.0	21	95	0	73	29	14	26	29	1.95
35479609--35479713	44	2.5	40	81	15	133	37	4	24	33	1.77
35480045--35480247	102	2.0	103	91	0	327	21	9	25	43	1.82
35481101--35481138	20	1.9	20	84	10	51	65	0	5	28	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35484043--35484544	47	10.6	47	92	2	799	29	29	8	32	1.87
35484043--35484544	96	5.3	96	91	4	806	29	29	8	32	1.87
35484043--35484544	143	3.5	143	94	2	843	29	29	8	32	1.87
35488308--35488367	15	4.0	15	80	0	66	23	6	26	43	1.78
35490665--35490759	21	4.5	21	79	0	73	36	30	12	20	1.89
35491473--35491534	29	2.1	29	82	11	74	41	12	16	29	1.85
35501259--35501503	50	4.8	50	80	6	217	27	20	28	23	1.99
35506408--35506442	18	1.9	18	88	0	52	65	5	0	28	1.15
35507257--35508000	372	2.0	372	99	0	1479	33	22	14	29	1.94
35510926--35511159	51	4.6	51	77	6	215	29	14	25	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226