genome.fa.s24.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  150  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47090608--47090778	32	5.4	32	76	4	159	38	21	20	20	1.94
47090924--47090996	24	3.1	23	78	5	83	47	23	8	20	1.76
47091043--47091408	27	13.6	27	87	0	471	22	24	21	32	1.98
47102113--47102185	36	2.0	36	94	0	128	34	13	13	38	1.85
47114101--47114160	26	2.3	26	88	0	84	31	16	8	43	1.78
47120970--47121031	30	2.2	30	85	8	85	30	6	8	54	1.55
47121446--47121511	24	2.7	24	77	13	71	60	13	1	24	1.42
47125509--47125565	27	2.2	26	90	6	89	56	3	3	36	1.34
47129842--47129884	16	2.5	18	78	21	56	60	0	0	39	0.97
47129837--47129946	9	11.9	9	72	15	66	61	1	0	35	1.13
47129849--47129957	45	2.4	47	80	7	116	63	2	0	33	1.15
47129867--47129947	37	2.2	37	82	12	96	62	2	1	33	1.16
47129842--47129944	19	5.2	19	67	28	54	61	1	0	35	1.14
47130350--47130423	23	3.5	21	75	17	73	28	2	6	62	1.35
47130446--47130590	10	15.6	9	67	15	55	33	2	5	58	1.33
47130637--47130727	38	2.4	38	80	10	105	39	0	2	58	1.10
47130662--47130815	9	17.0	9	75	17	124	33	0	1	64	1.07
47130339--47130805	20	24.4	19	65	16	132	34	1	5	58	1.31
47131340--47131368	15	1.9	15	100	0	58	13	10	6	68	1.37
47133010--47133034	12	2.1	12	100	0	50	52	0	0	48	1.00
47148405--47148495	17	5.4	17	66	23	57	40	3	3	52	1.34
47154336--47154445	57	2.0	55	82	7	132	28	18	4	49	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47156330--47156364	17	2.1	17	88	0	52	40	20	5	34	1.76
47159534--47159592	30	1.9	31	89	6	93	38	15	8	37	1.78
47160649--47160830	75	2.5	73	84	6	221	46	12	1	39	1.49
47161189--47161451	67	3.9	65	85	6	321	42	15	3	39	1.62
47161189--47161456	134	2.0	134	84	5	355	41	14	3	39	1.63
47160621--47161970	640	2.1	626	84	5	1764	39	15	9	35	1.79
47161827--47161970	67	2.1	67	89	2	218	41	16	4	37	1.68
47168871--47168929	21	2.8	20	92	5	82	40	3	0	55	1.16
47168871--47168922	7	7.3	7	97	2	95	40	1	0	57	1.10
47177223--47177262	19	2.1	19	85	4	53	75	7	12	5	1.18
47181072--47181126	7	8.1	7	78	15	62	85	1	12	0	0.68
47181080--47181121	6	6.8	6	79	15	50	85	0	14	0	0.59
47181079--47181124	11	4.5	10	87	12	67	86	0	13	0	0.56
47181072--47181126	27	2.0	27	86	6	76	85	1	12	0	0.68
47181071--47181124	20	2.7	21	86	11	69	87	1	11	0	0.63
47181291--47181511	108	2.1	107	85	2	291	25	16	8	50	1.72
47181984--47182041	24	2.4	24	91	0	89	34	6	25	32	1.83
47182374--47182842	131	3.6	130	89	1	688	30	20	24	24	1.99
47182758--47182929	87	2.0	87	97	0	326	28	23	25	22	1.99
47182636--47183139	218	2.3	219	85	1	645	28	20	25	25	1.99
47182545--47182946	44	9.2	43	65	11	172	29	21	24	24	1.99
47183161--47183536	44	8.8	43	70	10	263	31	21	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47183166--47183535	85	4.3	84	80	7	361	31	21	20	26	1.98
47185163--47185198	3	12.3	3	94	5	65	33	0	0	66	0.92
47196853--47197043	97	2.0	97	88	2	285	27	15	8	48	1.74
47197510--47198342	131	6.4	131	90	1	1242	29	19	24	26	1.98
47200162--47200201	12	3.3	12	78	0	53	20	2	15	62	1.43
47200441--47200640	107	1.9	107	91	0	328	29	19	20	31	1.97
47205756--47205831	31	2.5	31	91	0	125	42	23	6	27	1.79
47205812--47205856	20	2.2	20	88	0	63	44	31	4	20	1.71
47206033--47206184	73	2.1	74	92	1	252	19	27	9	43	1.82
47207016--47207090	31	2.4	32	76	10	75	25	8	21	45	1.79
47210929--47210980	24	2.2	24	89	0	77	9	21	44	25	1.82
47214089--47214148	29	2.1	29	83	0	75	35	25	23	16	1.95
47220214--47220561	116	2.9	119	86	4	499	34	28	10	26	1.90
47221098--47221137	21	1.9	21	100	0	80	17	20	7	55	1.66
47222513--47222615	52	2.0	52	90	7	165	57	0	0	41	1.05
47222513--47222696	50	3.8	50	75	20	178	58	0	2	39	1.10
47222550--47222706	40	3.9	40	90	5	244	61	0	1	36	1.07
47222550--47222709	81	2.0	79	90	2	248	61	0	1	36	1.07
47222513--47222695	91	2.0	92	86	10	259	58	0	2	39	1.10
47222513--47222706	40	4.8	40	85	8	225	59	0	2	38	1.09
47225794--47225824	16	1.9	16	93	0	53	45	0	0	54	0.99
47228261--47228315	27	2.0	27	82	6	67	43	3	5	47	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47250684--47250731	6	7.7	6	88	4	69	83	2	2	12	0.83
47250684--47250729	20	2.4	20	89	7	69	82	2	2	13	0.85
47251159--47251208	26	1.9	26	91	0	82	34	18	6	42	1.74
47252165--47252230	32	2.1	32	94	0	114	56	12	4	27	1.55
47254644--47254718	35	2.1	35	95	0	132	44	10	13	32	1.78
47255323--47255372	19	2.6	19	78	9	57	54	16	4	26	1.59
47257427--47257489	30	2.1	30	90	0	99	36	42	0	20	1.52
47259799--47259871	38	1.9	37	86	8	103	31	21	1	45	1.61
47260001--47260053	23	2.3	23	93	0	97	32	26	18	22	1.97
47260499--47260557	30	2.0	30	89	0	91	28	25	6	38	1.81
47265906--47265940	16	2.2	16	94	0	61	45	22	5	25	1.74
47272170--47272208	16	2.6	14	88	8	51	48	2	0	48	1.15
47274093--47274126	16	2.1	16	88	0	50	41	11	0	47	1.40
47281258--47281470	41	5.1	41	83	6	266	25	26	18	29	1.98
47281250--47281470	82	2.6	85	82	8	315	26	25	18	29	1.98
47281455--47281487	17	1.9	17	93	0	57	27	18	15	39	1.90
47281371--47281569	103	2.0	99	88	4	290	26	25	18	30	1.98
47281474--47281592	41	2.9	41	94	0	202	25	27	19	27	1.99
47281326--47281592	144	1.9	140	96	3	489	25	26	18	29	1.98
47285043--47285233	61	3.2	61	73	11	221	42	1	4	50	1.32
47284981--47285268	120	2.4	119	92	2	486	43	1	4	51	1.29
47285020--47285203	59	3.1	59	73	12	212	41	1	4	52	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47285047--47285230	59	3.1	58	70	20	180	42	1	4	50	1.33
47285214--47285252	16	2.4	17	87	12	55	43	0	0	56	0.99
47285214--47285248	18	2.0	18	88	5	54	45	0	0	54	0.99
47290610--47290661	24	2.1	25	85	3	70	63	23	0	13	1.29
47294338--47294368	9	3.4	9	90	0	53	25	12	22	38	1.90
47294419--47294455	9	4.1	9	85	0	56	48	13	10	27	1.75
47296287--47296319	14	2.4	14	90	10	50	36	9	0	54	1.32
47296522--47296580	30	2.0	30	96	0	109	44	11	10	33	1.75
47298400--47298695	27	11.0	27	75	11	243	43	21	15	20	1.88
47298400--47298682	54	5.3	52	82	6	311	44	20	15	19	1.87
47298404--47298682	80	3.5	79	86	6	359	44	21	15	19	1.87
47303821--47304001	91	2.0	91	82	4	222	27	19	16	37	1.93
47305854--47305887	17	2.0	17	100	0	68	47	0	11	41	1.40
47309912--47311460	778	2.0	778	99	0	3089	35	17	16	29	1.92
47313557--47314100	81	6.7	79	79	6	520	43	20	16	20	1.89
47313557--47314131	27	21.3	26	78	7	468	43	19	16	20	1.88
47315486--47315521	15	2.5	14	86	8	54	13	5	11	69	1.34
47320228--47320285	22	2.5	23	86	8	82	31	15	29	24	1.95
47321208--47321239	11	2.9	11	95	0	55	34	28	12	25	1.92
47331426--47331488	31	2.0	32	96	3	119	42	15	9	31	1.79
47335101--47335164	32	2.0	32	100	0	128	28	15	9	46	1.77
47335591--47335682	37	2.4	36	79	12	96	51	5	2	41	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47341184--47341214	13	2.4	13	94	0	53	32	22	0	45	1.53
47357777--47357890	46	2.5	46	81	8	126	40	20	14	24	1.90
47357817--47357933	44	2.6	44	81	5	119	37	20	16	25	1.93
47360071--47360127	20	2.8	19	84	5	60	22	33	0	43	1.54
47363163--47363201	20	2.0	20	85	10	53	41	0	2	56	1.13
47363532--47363576	23	1.9	24	86	13	67	57	0	0	42	0.98
47364109--47364159	23	2.3	22	86	3	66	45	7	15	31	1.75
47365375--47365480	42	2.5	41	77	13	101	28	1	4	65	1.23
47365542--47365812	141	1.9	142	85	4	379	53	12	11	23	1.70
47372409--47372512	52	2.0	53	86	5	149	60	5	12	21	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226