Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  187  of  226  ( 27070 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56414741--56414843
26
3.9
26
83
3
125
21
22
20
35
1.96
56414752--56414937
27
7.0
26
83
6
128
20
21
20
37
1.95
56414820--56414938
54
2.2
53
81
8
143
18
21
25
35
1.95
56415453--56415492
20
2.0
21
95
5
73
37
0
0
62
0.95
56415457--56415500
20
2.2
20
84
8
54
36
0
4
59
1.18
56422413--56422457
21
2.1
21
84
8
56
53
2
0
44
1.13
56424023--56424084
7
8.6
7
76
13
63
64
0
0
35
0.94
56424023--56424084
15
4.3
14
76
11
63
64
0
0
35
0.94
56423981--56424096
23
5.0
22
72
14
74
61
1
2
34
1.20
56426951--56427056
54
2.0
54
86
3
151
24
33
16
24
1.96
56436200--56436241
22
1.9
22
85
0
57
69
2
23
4
1.20
56437323--56437377
28
2.0
29
82
7
69
36
7
12
43
1.71
56438571--56438639
20
3.5
19
88
7
86
53
8
1
36
1.41
56441096--56441143
20
2.5
20
86
10
64
4
14
2
79
0.98
56442022--56442071
16
3.3
15
83
8
57
32
4
2
62
1.25
56442033--56442071
15
2.6
16
88
8
55
33
2
0
64
1.08
56443820--56443874
24
2.3
24
80
0
65
21
29
21
27
1.99
56443892--56443949
25
2.3
25
87
0
80
22
27
22
27
1.99
56446166--56446283
50
2.4
50
82
0
128
22
32
19
25
1.98
56449690--56449720
15
2.1
15
100
0
62
38
6
6
48
1.55
56450449--56450487
20
2.0
20
84
0
51
38
0
2
58
1.12
56453016--56453085
29
2.4
31
72
15
78
38
1
1
58
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56456983--56457021
20
2.0
20
84
0
51
28
12
12
46
1.79
56457024--56457100
33
2.4
32
82
4
91
27
9
16
46
1.77
56462732--56462771
15
2.4
18
76
20
50
37
2
5
55
1.35
56476982--56477036
28
2.0
28
85
0
74
54
3
23
18
1.59
56481732--56481781
23
2.2
23
92
0
82
12
32
24
32
1.91
56496693--56496759
32
2.1
32
86
10
93
31
0
46
22
1.52
56503539--56503598
30
2.0
31
90
3
95
20
38
0
41
1.52
56503697--56503736
20
1.9
21
85
10
55
22
22
0
55
1.44
56505851--56505908
22
2.6
22
88
2
89
31
29
0
39
1.57
56505878--56505993
51
2.3
51
93
0
196
29
25
0
45
1.54
56507304--56507653
122
2.8
124
86
3
463
33
21
15
29
1.94
56507304--56507653
126
2.8
122
85
4
452
33
21
15
29
1.94
56510738--56510793
29
2.0
28
82
3
67
53
1
1
42
1.21
56513183--56513211
5
6.0
5
92
8
51
82
0
17
0
0.66
56513183--56513211
14
2.0
15
93
6
51
82
0
17
0
0.66
56515058--56515119
24
2.6
24
75
17
65
40
12
4
41
1.65
56522750--56522793
18
2.4
19
85
7
56
50
0
2
47
1.13
56536756--56536802
22
2.1
23
84
11
62
10
0
36
53
1.36
56536830--56536888
28
2.1
27
87
9
84
50
0
11
37
1.39
56536830--56536888
27
2.1
28
87
9
86
50
0
11
37
1.39
56536908--56536988
34
2.3
36
85
8
112
43
0
8
48
1.34
56537050--56537569
126
4.1
126
89
1
747
37
16
16
28
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56537050--56537572
251
2.1
253
89
1
782
37
16
16
29
1.91
56541032--56541068
18
2.1
18
94
0
65
40
8
27
24
1.83
56541649--56541673
7
3.6
7
100
0
50
56
28
0
16
1.41
56542614--56542665
25
2.1
24
82
10
61
67
1
1
28
1.12
56543603--56543650
23
2.1
23
84
7
62
60
22
6
10
1.52
56544045--56544072
10
2.8
10
100
0
56
71
0
17
10
1.14
56555733--56555872
40
3.5
41
74
11
121
31
22
17
27
1.97
56556727--56556762
17
2.1
17
89
0
54
5
19
2
72
1.17
56556695--56556754
22
2.8
20
74
16
57
3
25
5
66
1.27
56559377--56559410
17
2.0
17
100
0
68
23
35
11
29
1.90
56562097--56562573
50
9.5
50
71
4
377
24
19
23
33
1.97
56562095--56562694
100
6.1
100
84
3
709
24
19
23
32
1.98
56562900--56563153
44
5.5
44
68
16
133
28
20
18
32
1.96
56562741--56563169
142
3.0
142
96
0
768
27
20
18
33
1.96
56563076--56563178
44
2.3
44
86
0
143
24
22
20
33
1.97
56565234--56565276
21
2.0
21
86
0
59
2
25
0
72
0.97
56571303--56571333
11
2.8
11
95
0
53
83
3
0
12
0.75
56571706--56571751
22
2.1
22
100
0
92
4
4
52
39
1.41
56571711--56571758
22
2.2
22
92
0
78
6
8
47
37
1.59
56579399--56579438
18
2.2
19
91
8
66
0
25
2
72
0.97
56580348--56580680
27
12.3
27
86
0
414
42
17
16
23
1.88
56580857--56580924
26
2.6
26
88
0
91
14
23
25
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56581039--56581099
30
2.0
31
87
9
90
18
27
24
29
1.98
56581039--56581129
33
2.9
30
83
9
94
19
27
25
27
1.99
56583721--56584132
155
2.7
155
85
1
513
31
24
19
24
1.98
56584231--56584271
9
4.6
9
84
9
57
39
26
0
34
1.57
56588102--56588131
15
1.9
16
93
6
53
6
10
3
80
1.01
56589758--56589791
11
3.1
11
88
12
52
47
23
0
29
1.52
56600191--56600317
37
3.4
37
83
4
166
37
28
14
20
1.91
56600215--56600351
37
3.6
38
82
7
145
35
31
13
19
1.91
56616429--56616467
14
2.8
14
84
0
51
53
0
5
41
1.23
56621325--56621387
33
1.9
33
87
6
92
22
23
25
28
1.99
56625638--56625683
22
2.1
22
84
8
58
45
4
15
34
1.66
56631821--56631859
19
2.1
19
100
0
78
30
20
15
33
1.94
56636064--56636131
34
2.0
34
100
0
136
32
14
20
32
1.93
56640498--56640530
2
16.5
2
100
0
66
51
0
48
0
1.00
56644483--56644635
51
3.0
51
96
1
290
44
17
8
29
1.78
56644586--56644691
33
3.2
34
83
10
105
42
16
8
33
1.78
56647747--56647828
26
3.0
27
75
12
87
43
1
2
52
1.22
56647882--56647923
18
2.6
16
82
17
52
45
0
0
54
0.99
56647882--56647916
18
2.0
18
88
5
54
45
0
0
54
0.99
56647829--56648053
120
1.9
119
94
0
396
44
1
6
48
1.36
56648002--56648036
18
2.0
17
88
5
52
45
0
0
54
0.99
56648002--56648056
15
3.4
16
80
16
53
47
0
1
50
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56647990--56648305
156
2.0
157
95
0
562
48
5
3
43
1.40
56648158--56648192
18
2.0
17
88
5
52
45
0
0
54
0.99
56648428--56648458
16
1.9
16
100
0
62
35
38
0
25
1.56
56649967--56650018
24
2.2
24
89
0
77
38
3
7
50
1.50
56654345--56654396
24
2.2
24
89
0
77
38
3
7
50
1.50
56659232--56659298
33
2.0
33
100
0
134
20
23
14
40
1.90
56661781--56661829
18
2.8
18
84
12
66
42
6
2
48
1.39
56666530--56666606
37
2.1
37
90
0
118
25
15
20
37
1.92
56688708--56688757
24
2.3
23
80
13
61
50
0
2
48
1.12
56688713--56688756
12
3.7
11
80
14
52
52
0
2
45
1.13
56688736--56688773
14
2.4
16
87
12
53
44
0
0
55
0.99
56688719--56688786
31
2.3
28
78
9
73
52
0
2
44
1.16
56689690--56689730
3
13.7
3
84
0
55
36
0
4
58
1.20
56707459--56707554
46
2.1
46
94
3
167
31
3
28
37
1.73
56713314--56713356
15
2.8
16
89
6
54
41
0
0
58
0.98
56719747--56719787
21
2.0
21
90
0
64
19
29
21
29
1.98
56730716--56730817
43
2.3
43
78
11
116
52
0
20
25
1.52
56730777--56730817
18
2.2
19
91
4
66
48
0
24
26
1.51
56732977--56733024
22
2.2
22
84
0
60
16
14
16
52
1.76
56736165--56736600
125
3.5
125
85
1
579
33
17
19
29
1.95
56739639--56739692
16
3.0
19
67
25
53
38
0
9
51
1.34
56739712--56739985
21
12.7
21
73
16
104
24
0
30
44
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56739722--56739779
28
2.1
28
87
6
82
20
0
34
44
1.52
56739750--56740268
42
12.2
42
76
9
439
26
0
26
46
1.60
56740073--56740268
21
9.2
21
90
2
293
22
1
30
45
1.59
56740266--56740311
12
3.8
12
100
0
92
8
0
34
56
1.30
56740318--56740357
7
5.9
7
83
16
57
52
0
0
47
1.00
56740315--56740357
12
3.3
12
78
15
50
53
0
0
46
1.00
56740372--56740463
21
4.4
21
94
5
168
22
0
32
44
1.53
56740372--56740463
41
2.2
43
96
3
170
22
0
32
44
1.53
56741010--56741052
18
2.4
18
88
0
59
44
9
27
18
1.80
56742819--56742872
27
2.0
28
81
3
65
53
0
3
42
1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226