genome.fa.s19.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  101  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29666553--29666616	33	2.0	32	84	3	83	20	20	20	39	1.93
29684778--29684840	33	1.9	33	86	0	90	33	19	15	31	1.93
29689175--29689234	31	2.0	31	86	3	86	36	16	5	41	1.70
29692539--29692571	16	2.1	16	94	0	57	15	6	33	45	1.70
29708133--29708198	21	3.1	21	68	14	55	46	1	4	46	1.32
29708127--29708216	20	4.6	19	75	14	58	46	1	3	48	1.25
29708184--29708227	19	2.2	20	85	14	65	38	0	2	59	1.10
29708917--29708989	26	2.8	26	91	2	110	17	16	38	27	1.91
29712916--29713029	43	2.7	43	75	4	124	22	18	27	31	1.97
29714755--29715004	125	2.0	125	96	0	455	24	21	31	23	1.98
29720518--29720615	44	2.3	41	84	11	126	33	24	16	25	1.96
29723539--29723602	32	2.0	32	96	0	119	37	17	21	23	1.94
29726184--29726273	45	2.0	45	100	0	180	44	6	17	31	1.75
29736417--29736502	7	11.7	7	77	9	82	18	0	34	46	1.50
29736429--29736502	22	3.4	22	86	5	96	18	0	32	48	1.49
29738735--29738803	30	2.3	30	90	5	104	20	33	24	21	1.97
29751375--29751579	48	4.4	47	75	8	177	29	21	22	26	1.99
29751751--29751804	26	2.1	26	89	0	81	29	12	31	25	1.93
29751902--29751948	23	2.1	21	81	14	51	29	2	14	53	1.53
29756898--29757120	47	4.7	47	72	12	161	21	28	19	30	1.98
29757824--29757848	13	1.9	13	100	0	50	64	16	4	16	1.44
29764804--29764882	23	3.4	23	78	3	86	11	21	18	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29764807--29764881	8	9.6	8	71	9	57	9	21	18	50	1.74
29769024--29769101	29	2.8	29	81	13	92	26	33	15	24	1.95
29769183--29769222	9	4.3	9	84	6	53	15	35	20	30	1.93
29769182--29769218	19	2.0	18	89	5	56	18	32	16	32	1.93
29771038--29771247	40	5.3	39	87	5	233	24	21	28	25	1.99
29770985--29771247	120	2.2	120	81	4	300	25	21	27	25	1.99
29771038--29771282	80	3.1	80	81	3	228	25	21	28	24	1.99
29774736--29774909	46	3.7	46	80	8	210	23	29	20	26	1.98
29774594--29774909	94	3.4	92	76	13	256	24	28	18	28	1.98
29780515--29780614	28	3.6	28	75	9	89	27	29	15	29	1.96
29780839--29780900	8	7.8	8	85	0	52	9	19	19	51	1.74
29782135--29782166	16	2.0	16	93	0	55	15	6	28	50	1.68
29786455--29786585	66	1.9	69	80	9	151	33	14	31	20	1.93
29788986--29789395	205	2.0	205	99	0	802	33	17	13	35	1.89
29790390--29790447	29	2.1	27	83	6	71	29	31	13	25	1.94
29791072--29791316	122	2.0	122	97	0	463	39	16	24	20	1.92
29799296--29799326	6	5.2	6	100	0	62	67	0	32	0	0.91
29817794--29817949	57	2.7	57	93	2	260	30	23	21	24	1.99
29818454--29818500	20	2.3	20	88	0	67	34	12	2	51	1.52
29830017--29830378	47	7.7	47	94	1	620	31	8	30	29	1.86
29830230--29830303	22	3.3	22	64	17	62	29	10	31	28	1.91
29830497--29830575	37	2.1	37	90	0	122	24	18	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29836472--29836506	16	2.2	16	100	0	70	31	25	5	37	1.80
29836705--29836735	15	2.1	15	100	0	62	29	6	19	45	1.75
29841335--29841401	34	2.0	34	84	0	89	28	4	25	41	1.74
29849094--29849762	334	2.0	334	100	0	1338	31	13	14	40	1.84
29854219--29854329	40	2.8	40	79	6	134	36	25	12	25	1.91
29856128--29856280	48	3.2	48	83	1	200	26	20	22	30	1.98
29858119--29858167	25	2.0	24	88	7	73	57	16	12	14	1.66
29861983--29862034	23	2.3	23	96	0	95	23	32	28	15	1.95
29874671--29874728	24	2.5	23	81	16	66	62	0	5	32	1.18
29877090--29877141	27	2.0	27	84	3	70	38	23	15	23	1.92
29877102--29877154	27	2.0	27	92	0	88	33	20	16	28	1.95
29883160--29883225	17	3.6	17	74	21	55	22	4	4	68	1.27
29883168--29883241	17	4.4	17	75	21	57	24	5	4	66	1.30
29886129--29886286	43	3.7	42	78	7	176	25	17	29	27	1.98
29886129--29886291	84	1.9	84	87	4	240	25	17	28	28	1.97
29888080--29888119	6	6.7	6	88	0	62	15	0	5	80	0.88
29889096--29889130	18	2.0	17	88	5	52	80	0	20	0	0.72
29889099--29889130	16	1.9	17	93	6	57	81	0	18	0	0.70
29890722--29890751	14	2.1	14	100	0	60	43	0	13	43	1.43
29896435--29896474	20	2.0	20	85	0	53	57	15	12	15	1.66
29904051--29904172	27	4.5	27	89	2	183	42	20	18	18	1.89
29904568--29904662	34	2.8	34	90	0	145	28	23	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29909924--29909977	21	2.6	21	75	0	63	18	20	33	27	1.96
29911684--29911715	14	2.2	15	94	5	57	25	0	18	56	1.42
29913484--29913625	40	3.5	40	84	1	187	23	24	27	24	2.00
29917334--29917557	69	3.2	69	100	0	448	25	26	16	32	1.96
29920349--29920524	46	3.8	45	81	10	212	21	21	29	28	1.98
29920346--29920516	93	1.8	93	94	0	306	21	21	29	27	1.98
29923188--29923231	22	2.0	23	81	4	54	47	20	2	29	1.62
29930585--29930757	27	6.4	27	85	2	213	31	23	5	39	1.78
29930585--29930753	81	2.1	81	87	2	241	31	24	5	39	1.78
29930789--29930939	27	5.6	27	85	4	189	43	21	5	29	1.76
29930756--29930939	54	3.4	53	81	4	190	41	20	8	29	1.81
29930789--29930938	81	1.9	81	85	5	214	43	21	6	29	1.76
29930951--29931002	27	1.9	27	88	7	79	40	13	11	34	1.81
29931074--29931625	27	20.7	27	81	5	570	36	18	17	27	1.93
29931074--29931625	54	10.4	54	86	4	631	36	18	17	27	1.93
29933045--29933267	39	5.6	39	83	7	231	24	27	21	26	2.00
29933045--29933267	79	2.8	78	82	8	231	24	27	21	26	2.00
29941075--29941246	40	4.3	40	87	2	213	25	27	21	25	1.99
29941075--29941299	80	2.8	78	78	8	220	25	27	21	25	1.99
29941231--29941308	40	1.9	41	82	10	97	26	28	20	24	1.99
29942217--29942619	203	2.0	202	98	0	779	27	17	16	37	1.92
29944723--29944763	22	2.0	21	85	9	57	26	9	7	56	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29948781--29948870	36	2.4	36	78	9	92	36	10	6	46	1.64
29948855--29948937	39	2.1	38	84	4	103	36	10	9	43	1.73
29960798--29960841	22	1.9	24	90	9	74	77	0	13	9	0.99
29960796--29960837	12	3.5	12	75	12	50	78	0	11	9	0.96
29960784--29960842	21	2.7	22	80	16	70	76	1	15	6	1.07
29960907--29961005	49	2.0	49	98	0	189	52	6	22	19	1.67
29963997--29964071	38	1.9	39	91	2	125	38	10	8	42	1.69
29963997--29964094	38	2.5	39	83	9	121	35	10	10	43	1.72
29964079--29964164	39	2.2	39	81	4	111	29	8	11	51	1.67
29964086--29964159	38	1.9	39	88	2	114	31	9	10	48	1.70
29964119--29964170	28	1.9	27	84	7	70	30	9	11	48	1.72
29967199--29967285	44	2.0	44	100	0	174	33	20	9	36	1.85
29973342--29973432	45	2.0	45	91	0	146	34	13	31	20	1.91
29976497--29976588	33	2.7	33	74	17	98	30	19	26	23	1.98
29981633--29981960	104	3.2	104	96	0	586	18	19	31	31	1.96
29981879--29982101	71	3.1	71	96	0	392	23	16	29	30	1.96
29992079--29992118	17	2.4	17	86	0	53	30	5	32	32	1.79
29996448--29996487	14	2.9	14	78	14	55	2	17	0	80	0.83
29996438--29996492	24	2.3	23	76	14	58	3	18	0	78	0.90
30006924--30007320	23	17.1	23	87	1	551	40	19	12	27	1.88
30006924--30007320	116	3.4	116	89	0	589	40	19	12	27	1.88
30008296--30008422	43	3.0	42	76	17	134	32	25	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30012916--30013243	174	1.9	174	95	0	593	30	24	14	30	1.94
30013196--30013274	29	2.7	30	82	13	110	30	30	13	25	1.94
30015291--30015394	52	2.0	52	86	0	145	20	28	16	34	1.94
30023197--30023264	29	2.3	29	82	5	84	27	29	13	29	1.94
30025025--30025393	103	3.6	103	92	0	623	18	19	29	32	1.96
30029731--30029755	5	5.0	5	100	0	50	80	0	0	20	0.72
30031592--30031619	13	2.2	13	100	0	56	39	14	21	25	1.91
30046874--30047186	41	7.6	41	81	4	335	32	16	28	21	1.95
30046960--30047026	21	3.2	21	69	12	66	28	22	32	16	1.95
30046880--30047186	123	2.5	122	84	3	375	32	17	28	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205