genome.fa.s19.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  109  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32464918--32464987	34	2.2	31	89	7	104	22	22	22	31	1.98
32468100--32468167	27	2.5	27	81	9	77	25	19	30	25	1.98
32469892--32469933	19	2.2	19	87	8	59	38	2	7	52	1.42
32469896--32469954	20	3.1	19	83	11	68	38	1	5	54	1.33
32469905--32469959	10	5.6	10	72	12	51	36	0	5	58	1.21
32470076--32470129	23	2.3	23	81	6	65	38	14	7	38	1.75
32476390--32476503	57	2.0	57	87	0	165	21	13	28	36	1.91
32481204--32481323	11	11.4	11	76	17	103	58	0	2	39	1.12
32481213--32481273	29	2.0	31	90	6	99	54	0	1	44	1.10
32481189--32481341	41	3.7	41	86	7	204	59	0	1	38	1.09
32481307--32481353	17	2.8	17	83	0	58	61	0	0	38	0.96
32489542--32489584	17	2.5	17	92	7	70	60	0	0	39	0.97
32494778--32495017	120	2.0	120	93	1	410	42	7	19	31	1.78
32499342--32499583	50	4.9	50	81	4	249	21	27	22	28	1.99
32499920--32499977	30	1.9	30	85	0	80	31	24	8	36	1.85
32504831--32505018	27	7.0	26	86	6	198	42	19	17	20	1.89
32504827--32505020	54	3.6	52	83	10	223	41	19	17	21	1.90
32504827--32505018	80	2.4	81	83	6	239	42	19	17	20	1.90
32507075--32507698	312	2.0	312	98	0	1203	32	18	18	30	1.95
32516016--32516047	2	16.0	2	100	0	64	0	50	0	50	1.00
32523045--32523078	12	2.8	12	91	8	52	55	17	0	26	1.42
32524723--32524765	20	2.2	20	87	8	61	27	0	4	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32557355--32557392	20	1.9	19	89	5	58	57	0	13	28	1.36
32565314--32565424	30	3.7	30	96	0	204	20	36	27	15	1.93
32574522--32575157	342	1.9	342	84	1	862	24	19	22	33	1.97
32582555--32582585	8	4.0	8	91	8	55	25	0	51	22	1.48
32582542--32582585	23	1.9	23	86	9	63	29	0	47	22	1.51
32582555--32582585	15	2.0	16	93	6	55	25	0	51	22	1.48
32590114--32590153	20	2.1	19	85	4	53	42	0	7	50	1.30
32594966--32595032	25	2.6	25	83	4	71	20	23	23	31	1.98
32597384--32597421	20	1.9	20	88	0	58	28	15	26	28	1.96
32607621--32607703	34	2.5	33	87	11	118	25	22	22	28	1.99
32614202--32614369	29	5.8	29	78	5	160	38	16	17	27	1.91
32618992--32619029	10	3.8	10	83	13	51	21	18	31	28	1.97
32618993--32619030	20	1.9	20	94	0	67	18	18	34	28	1.95
32619147--32619258	29	3.9	29	80	2	118	35	23	16	25	1.94
32619176--32619310	58	2.3	59	81	7	150	34	21	15	28	1.94
32619176--32619303	29	4.4	28	77	9	114	35	21	16	26	1.95
32619796--32619829	17	2.0	17	88	0	50	29	0	38	32	1.58
32627492--32627576	38	2.2	38	83	4	100	37	5	8	48	1.58
32629992--32630027	18	1.9	18	88	5	54	5	33	0	61	1.19
32633711--32633752	21	2.0	21	86	9	59	28	21	14	35	1.92
32635292--32635411	60	2.0	60	93	0	204	24	12	15	48	1.79
32649616--32649676	26	2.4	26	81	13	81	39	11	9	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32662258--32662302	24	1.9	24	86	4	65	42	15	11	31	1.82
32663575--32663625	3	17.0	3	100	0	102	33	0	0	66	0.92
32668046--32668070	13	1.9	13	100	0	50	32	16	8	44	1.76
32679718--32679819	30	3.4	30	84	9	113	37	13	28	20	1.91
32679776--32679842	30	2.2	31	84	5	84	37	13	20	28	1.91
32683227--32683274	25	1.9	25	87	8	71	43	22	16	16	1.87
32690803--32690863	32	1.9	32	86	0	86	40	14	6	37	1.72
32691879--32691958	42	1.9	42	86	0	115	33	41	10	15	1.80
32691920--32691988	29	2.4	28	82	2	84	33	36	11	18	1.87
32696481--32696578	42	2.3	42	82	3	117	20	23	28	27	1.99
32700428--32700482	22	2.5	22	84	0	74	40	23	21	14	1.90
32700999--32701047	19	2.5	20	86	3	73	24	12	0	63	1.29
32705774--32705843	36	1.9	37	82	8	90	40	4	0	55	1.19
32707397--32707479	41	2.0	41	97	0	157	20	15	36	27	1.93
32710127--32710169	21	2.0	21	100	0	86	32	9	27	30	1.88
32712447--32712499	25	2.1	26	82	3	63	58	7	1	32	1.37
32715053--32715249	48	4.1	48	82	2	225	22	27	20	28	1.99
32716726--32716775	25	2.0	25	92	0	82	38	2	24	36	1.67
32719514--32719547	14	2.5	14	90	4	52	79	0	2	17	0.86
32724482--32724629	65	2.3	64	85	7	210	22	26	10	40	1.86
32725350--32725399	24	2.1	24	84	0	64	26	22	16	36	1.94
32725963--32726040	38	2.1	38	82	0	93	41	20	5	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32730626--32730669	3	14.0	3	81	9	52	31	2	0	65	1.05
32730629--32730669	16	2.5	17	88	7	59	31	2	0	65	1.05
32730626--32730669	19	2.3	19	88	7	63	31	2	0	65	1.05
32735301--32735377	34	2.1	35	83	9	93	76	6	9	7	1.15
32735301--32735427	38	3.3	37	73	15	105	74	7	8	9	1.24
32735380--32735410	6	5.3	6	96	3	55	70	12	0	16	1.16
32736619--32736662	19	2.3	19	92	0	70	29	2	0	68	1.02
32739301--32739478	27	6.6	26	78	6	151	26	16	28	27	1.97
32739302--32739457	82	1.9	81	84	3	206	26	17	28	26	1.97
32739298--32739478	82	2.2	81	79	2	202	27	17	28	27	1.97
32746722--32746763	16	2.7	15	85	10	57	16	7	2	73	1.15
32747996--32748054	27	2.2	27	87	0	82	13	13	32	40	1.84
32749213--32749254	16	2.7	15	85	10	57	16	7	2	73	1.15
32750487--32750545	27	2.2	27	87	0	82	13	13	32	40	1.84
32750616--32750730	48	2.4	48	83	0	149	20	9	29	40	1.84
32763271--32763370	51	2.0	51	94	4	175	50	11	6	33	1.62
32764705--32764739	17	1.9	19	88	11	56	65	5	17	11	1.43
32771978--32772019	18	2.4	17	81	14	50	21	7	0	71	1.09
32786721--32786815	37	2.6	37	84	0	127	13	12	31	42	1.82
32795637--32795752	61	1.9	61	89	0	178	33	2	11	52	1.51
32798755--32798780	13	2.0	13	100	0	52	30	7	23	38	1.83
32799886--32800012	43	2.9	43	75	14	127	22	17	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32800990--32801189	23	8.7	23	85	1	240	27	11	20	41	1.85
32800988--32801177	69	2.8	69	85	3	265	27	10	19	43	1.83
32803385--32803443	20	3.0	20	73	11	50	20	6	3	69	1.26
32805962--32806021	24	2.5	24	86	7	86	16	18	33	31	1.93
32805703--32806123	171	2.4	172	86	7	559	17	22	27	32	1.96
32806164--32806222	24	2.5	24	85	0	82	16	20	32	30	1.95
32808137--32808179	21	2.0	21	90	4	68	53	2	0	44	1.13
32808202--32808243	9	4.9	9	80	8	52	57	0	0	42	0.99
32808202--32808269	25	2.8	25	70	22	63	51	0	0	48	1.00
32808283--32808319	16	2.3	17	81	13	51	59	0	2	37	1.12
32815006--32815309	43	7.1	43	82	4	294	28	26	16	27	1.97
32815003--32815303	128	2.3	128	82	3	374	28	26	16	27	1.97
32815003--32815305	86	3.5	86	82	4	344	28	27	16	27	1.97
32817479--32819052	787	2.0	787	100	0	3148	32	23	13	30	1.94
32818590--32819771	591	2.0	591	99	0	2355	34	24	13	27	1.93
32820303--32820356	21	2.5	20	77	16	56	35	38	0	25	1.57
32820358--32820398	21	2.0	21	85	4	57	36	39	4	19	1.73
32820915--32820949	18	2.0	17	88	5	52	54	0	0	45	0.99
32820989--32821055	15	4.7	14	73	19	50	59	1	0	38	1.06
32820998--32821058	26	2.4	25	83	8	79	60	1	0	37	1.07
32821274--32821311	16	2.3	17	90	4	60	57	5	2	34	1.35
32823782--32823807	5	5.2	5	100	0	52	80	0	19	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32825116--32825461	114	3.0	114	90	5	531	29	20	22	28	1.98
32825244--32825635	187	2.1	187	88	2	583	28	19	23	29	1.98
32825358--32825520	72	2.2	72	87	5	222	28	17	23	31	1.97
32825431--32825766	114	2.9	114	89	1	487	29	20	22	27	1.99
32825131--32825838	301	2.4	299	89	2	1091	28	20	22	28	1.98
32825659--32825888	72	3.2	71	89	3	352	27	18	23	30	1.98
32825666--32825887	73	3.1	72	90	3	347	27	17	22	31	1.97
32827334--32827543	43	4.9	43	78	4	201	28	30	18	22	1.98
32827334--32827533	86	2.3	85	82	6	224	30	31	18	21	1.96
32833424--32833606	9	21.3	9	67	14	84	33	3	18	44	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205