genome.fa.s19.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  162  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48384057--48384119	18	3.3	19	70	12	65	39	3	11	46	1.55
48384057--48384134	39	2.0	39	100	0	156	38	2	10	48	1.51
48384062--48384145	39	2.2	39	91	4	134	38	3	13	45	1.60
48386346--48386423	15	5.2	15	67	11	61	44	7	21	25	1.79
48386342--48386423	30	2.7	30	94	0	137	46	7	21	24	1.77
48390758--48390810	27	2.0	26	96	3	97	37	9	18	33	1.83
48391401--48391482	19	4.3	18	74	13	58	62	2	0	35	1.09
48391811--48391888	29	2.8	28	88	5	115	23	42	0	34	1.54
48393331--48393395	20	3.3	20	81	10	80	24	6	3	66	1.29
48393444--48393486	21	2.1	20	91	4	68	44	0	0	55	0.99
48395267--48395321	9	5.9	9	74	21	51	32	3	1	61	1.24
48395272--48395375	19	5.3	19	72	18	88	29	9	2	57	1.45
48395368--48395443	27	2.8	28	82	5	95	32	0	0	67	0.91
48395376--48395443	28	2.5	27	88	4	102	33	0	0	66	0.92
48395397--48395439	20	2.1	21	86	4	61	32	0	0	67	0.91
48396203--48396247	21	2.0	23	87	8	67	60	2	0	37	1.09
48396328--48396397	31	2.2	31	82	7	88	52	1	5	40	1.34
48399269--48399302	7	4.9	7	100	0	68	14	0	0	85	0.60
48400250--48400436	51	3.7	49	82	5	205	25	17	26	29	1.97
48400254--48400438	101	1.8	101	87	3	273	25	17	26	30	1.98
48406317--48406509	57	3.6	53	83	8	223	45	13	18	22	1.85
48408109--48408249	27	5.2	27	85	3	194	37	9	27	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48408108--48408263	81	1.9	82	86	1	224	36	10	28	25	1.88
48410792--48410824	4	8.2	4	100	0	66	51	24	0	24	1.48
48415289--48415463	88	2.0	86	80	8	194	44	10	9	36	1.72
48422781--48422848	32	2.1	32	91	5	111	29	0	17	52	1.45
48425224--48425310	41	2.1	41	89	0	129	25	0	12	62	1.31
48431895--48431952	23	2.6	23	79	15	68	36	20	0	43	1.52
48431884--48431946	22	2.8	23	80	7	67	36	20	1	41	1.62
48432486--48432720	125	1.9	125	89	5	368	31	22	14	31	1.94
48433694--48433733	21	1.9	21	84	0	53	35	7	2	55	1.42
48435679--48435742	31	2.1	31	82	5	76	31	6	6	56	1.49
48437547--48437585	19	2.0	20	90	5	62	12	12	15	58	1.62
48450719--48450743	13	1.9	13	100	0	50	28	16	16	40	1.89
48450757--48450824	33	2.1	33	100	0	136	22	5	35	36	1.78
48457252--48457296	22	2.0	22	91	0	72	33	2	15	48	1.57
48461027--48461071	22	2.0	22	87	8	65	33	4	15	46	1.66
48462330--48462398	36	1.9	36	87	0	102	18	30	14	36	1.91
48468409--48468502	48	2.0	48	89	4	145	29	23	15	30	1.96
48470516--48470546	9	3.4	9	90	0	53	25	12	22	38	1.90
48470835--48470894	30	2.0	31	86	3	86	20	40	0	40	1.52
48472155--48472252	49	2.0	51	84	8	130	36	22	4	36	1.73
48472244--48472287	16	2.8	16	89	0	70	34	29	0	36	1.58
48472592--48472658	27	2.6	27	92	4	111	41	8	1	47	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48472991--48473025	3	11.7	3	100	0	70	0	0	31	68	0.90
48476320--48476359	12	3.5	11	90	6	62	67	2	2	27	1.16
48476352--48476397	15	3.0	16	81	9	60	45	0	2	52	1.13
48476431--48476598	38	4.3	39	68	17	98	44	2	4	48	1.36
48476466--48476517	15	3.6	15	80	12	56	44	0	1	53	1.11
48476350--48476632	119	2.4	120	96	0	523	43	1	4	50	1.33
48476446--48476608	37	4.2	38	64	19	102	42	1	4	51	1.32
48476594--48476635	15	2.7	16	82	14	52	45	0	2	52	1.13
48476585--48476626	15	2.9	15	82	10	52	47	0	0	52	1.00
48478973--48479048	27	2.8	27	87	0	107	15	28	30	25	1.96
48482800--48482848	22	2.3	22	96	3	91	32	0	28	38	1.57
48489970--48490011	21	2.0	22	90	4	68	2	21	7	69	1.25
48493680--48493707	12	2.3	12	100	0	56	50	0	7	42	1.30
48496605--48496837	124	1.9	125	86	3	335	39	7	12	40	1.71
48498180--48498208	6	4.8	6	100	0	58	65	17	0	17	1.27
48503176--48503263	43	2.0	43	97	0	167	38	19	15	26	1.92
48506412--48506462	20	2.3	23	83	9	63	74	7	1	15	1.13
48506412--48506462	10	4.8	10	76	21	50	74	7	1	15	1.13
48509752--48509801	11	4.5	11	87	2	64	18	34	4	44	1.68
48510959--48510998	7	5.7	7	93	0	71	30	0	12	57	1.36
48512000--48517726	21	269.1	21	77	7	4579	47	26	0	25	1.57
48512000--48517726	43	134.0	43	77	9	5024	47	26	0	25	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48512558--48512640	14	5.9	14	77	7	60	45	30	0	24	1.53
48512573--48512606	7	5.0	7	92	3	52	41	41	0	17	1.50
48512604--48512644	14	2.9	14	96	3	73	46	21	0	31	1.52
48513352--48513386	14	2.5	15	86	13	56	40	40	0	20	1.52
48513425--48513483	26	2.2	27	88	8	86	47	20	0	32	1.50
48513706--48513790	27	3.2	26	73	21	77	48	25	0	25	1.52
48516117--48516161	14	3.7	13	75	25	53	51	22	0	26	1.49
48516979--48517038	13	5.4	13	64	35	50	50	25	0	25	1.50
48531799--48531869	28	2.5	28	100	0	142	61	0	8	29	1.25
48531959--48532003	16	2.8	17	75	18	51	35	2	0	62	1.08
48533204--48533244	16	2.5	16	88	4	55	51	0	2	46	1.14
48539924--48540579	153	4.3	153	88	4	869	30	9	7	51	1.63
48540574--48541006	153	2.9	149	82	6	530	53	7	9	29	1.61
48542906--48542965	11	5.5	11	78	7	59	18	10	8	63	1.50
48542903--48542964	22	2.8	22	85	4	72	17	9	8	64	1.47
48544264--48544304	16	2.6	16	92	0	64	41	2	34	21	1.67
48544259--48544312	16	3.4	15	82	10	63	37	1	31	29	1.68
48544526--48544567	15	2.7	16	82	14	52	52	2	0	45	1.13
48544535--48544576	15	2.9	15	82	10	52	52	0	0	47	1.00
48544561--48544748	61	3.1	61	69	17	192	48	6	1	43	1.38
48544524--48544762	120	2.0	121	97	0	453	49	5	1	42	1.36
48544641--48544687	16	3.0	16	78	12	53	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48548931--48548957	12	2.2	12	100	0	54	18	25	33	22	1.97
48551053--48551081	10	2.9	10	100	0	58	31	6	10	51	1.62
48551434--48551483	23	2.2	22	82	3	55	68	8	2	22	1.26
48553116--48553160	10	4.8	10	86	10	60	40	0	13	46	1.43
48555110--48555137	13	2.2	13	100	0	56	32	7	21	39	1.80
48555502--48555581	25	3.2	26	79	10	71	33	21	25	20	1.97
48555517--48555587	25	2.9	25	81	4	83	35	19	23	21	1.96
48559019--48559407	46	8.6	46	91	2	628	34	14	21	29	1.93
48559023--48559407	91	4.3	91	98	0	729	35	14	21	28	1.93
48575624--48575677	25	2.2	25	82	0	63	29	18	27	24	1.98
48575699--48575763	24	2.7	24	83	7	78	35	16	26	21	1.95
48593506--48593538	16	2.0	17	88	5	50	63	3	27	6	1.32
48593950--48594012	31	2.0	31	84	0	81	34	6	7	50	1.57
48596190--48596251	30	2.1	29	82	11	74	37	1	0	61	1.06
48601891--48601940	17	3.0	16	85	5	64	62	0	2	36	1.07
48611612--48611777	78	2.1	77	89	5	246	23	6	24	45	1.75
48615134--48615158	13	1.9	13	100	0	50	20	8	16	56	1.65
48620387--48620961	284	2.0	289	95	3	1045	46	12	9	31	1.72
48625763--48625811	22	2.2	23	88	3	73	71	0	4	24	1.03
48628816--48629006	23	8.3	23	91	2	303	21	21	26	29	1.99
48635908--48635969	26	2.4	26	88	0	97	32	20	20	25	1.98
48636369--48636416	23	2.1	23	88	3	71	43	16	20	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48639206--48639251	24	2.0	23	82	4	56	60	2	8	28	1.38
48639259--48639301	19	2.3	18	84	4	50	62	2	4	30	1.28
48642465--48642535	35	2.0	36	83	8	92	50	2	9	36	1.50
48642693--48642784	3	29.3	3	69	12	51	61	3	5	29	1.34
48642685--48642730	24	2.0	23	82	4	56	60	2	8	28	1.38
48642753--48642820	18	3.7	18	77	13	75	61	2	4	30	1.30
48646759--48646813	28	2.0	27	82	10	67	20	9	12	58	1.61
48652157--48652206	22	2.3	22	92	0	82	46	12	28	14	1.79
48690140--48690209	26	2.5	27	78	13	70	44	1	0	54	1.09
48690158--48690207	13	3.2	16	70	18	52	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205