genome.fa.s19.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  191  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56702014--56702055	15	2.7	16	85	7	59	14	45	2	38	1.58
56703868--56703986	60	2.0	60	93	3	204	36	8	15	39	1.77
56705528--56705596	21	3.3	21	89	0	102	34	20	43	1	1.61
56705561--56705608	12	4.2	12	74	15	57	37	20	41	0	1.53
56705984--56706084	43	2.3	43	80	6	116	28	15	23	31	1.96
56706044--56706272	43	5.4	42	76	5	183	24	22	20	32	1.98
56706077--56706234	85	1.8	86	83	4	212	25	22	17	34	1.96
56706044--56706251	85	2.5	84	75	5	204	24	22	19	33	1.97
56706752--56706803	24	2.1	25	85	3	70	67	3	0	28	1.08
56710372--56710455	42	2.0	42	97	0	159	48	19	13	19	1.80
56712575--56712608	4	8.0	4	90	9	50	23	0	2	73	0.97
56712558--56712617	22	2.7	22	73	19	61	26	0	6	66	1.16
56720069--56720103	6	5.8	6	100	0	70	51	17	0	31	1.45
56720071--56720111	18	2.3	18	91	0	64	51	21	0	26	1.48
56720179--56720213	16	2.2	16	89	0	52	45	22	8	22	1.79
56732788--56732880	18	5.2	18	90	0	150	27	24	16	31	1.96
56743180--56743221	22	2.0	21	85	4	57	47	0	4	47	1.23
56749067--56749226	48	3.3	48	92	1	250	19	15	15	50	1.79
56754193--56754246	3	18.0	3	100	0	108	66	0	0	33	0.92
56766675--56766720	13	3.5	13	78	0	56	32	4	34	28	1.77
56766668--56766720	26	2.0	26	92	0	88	28	5	32	33	1.81
56769729--56769766	18	2.2	18	90	4	60	21	15	7	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56774934--56774971	3	12.7	3	100	0	76	34	0	0	65	0.93
56775105--56775189	32	2.4	35	81	15	95	65	0	1	32	1.00
56775139--56775168	11	2.7	11	89	0	51	56	0	3	40	1.16
56777500--56777526	3	9.0	3	100	0	54	33	0	0	66	0.92
56778284--56778586	126	2.4	126	80	3	318	35	14	27	22	1.93
56778572--56778604	6	5.5	6	100	0	66	18	0	48	33	1.48
56778450--56778727	144	2.0	143	84	5	375	31	13	30	24	1.94
56786823--56786902	28	2.9	28	80	0	97	33	10	13	42	1.78
56788937--56788978	19	2.2	19	100	0	84	9	4	45	40	1.58
56789092--56789155	21	3.0	21	79	0	74	15	25	17	42	1.88
56790577--56790670	33	2.8	34	77	9	84	32	14	24	27	1.95
56791052--56791153	40	2.7	37	78	11	107	27	19	25	27	1.99
56796197--56796230	17	2.0	17	94	0	59	32	5	11	50	1.63
56798810--56798916	53	2.0	53	87	7	155	59	2	4	32	1.32
56798888--56798925	19	2.0	19	89	0	58	55	5	7	31	1.51
56798846--56798914	24	2.6	25	80	11	77	59	4	4	31	1.37
56805566--56805658	31	3.0	31	74	4	98	32	20	7	39	1.80
56822993--56823047	27	2.0	27	92	0	92	67	1	0	30	1.01
56826887--56827002	40	2.9	40	88	0	151	33	21	21	23	1.97
56827117--56827159	22	1.9	22	85	4	59	46	25	18	9	1.79
56829548--56829597	25	2.0	25	96	0	91	50	12	10	28	1.71
56830265--56830306	7	6.1	7	88	5	68	71	0	2	26	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56830247--56830302	13	4.3	13	86	4	60	76	5	1	16	1.05
56830259--56830304	13	3.5	13	87	3	65	73	2	2	21	1.04
56831939--56832001	21	2.9	21	72	18	58	47	7	7	36	1.62
56833296--56833364	26	2.7	27	86	10	85	17	5	37	39	1.74
56833305--56833364	26	2.3	26	91	5	95	16	5	36	41	1.70
56835128--56835183	22	2.5	23	82	2	69	51	1	1	44	1.22
56835159--56835198	16	2.5	16	91	0	62	47	2	7	42	1.45
56835187--56835329	68	2.1	67	92	2	243	40	5	9	44	1.59
56835271--56835298	9	3.1	9	100	0	56	32	0	10	57	1.33
56837057--56837193	37	3.7	37	100	0	274	41	15	18	24	1.89
56838676--56838732	29	2.0	29	82	6	71	45	3	1	49	1.29
56855328--56855402	35	2.1	35	80	4	80	34	14	12	38	1.83
56856783--56856839	24	2.3	24	84	6	78	24	8	15	50	1.72
56857798--56857929	67	2.0	66	93	1	228	31	10	22	35	1.88
56857925--56857970	24	1.9	24	100	0	92	39	15	17	28	1.90
56858238--56858457	102	2.2	102	97	0	413	42	0	4	52	1.28
56858325--56858390	26	2.4	28	78	19	75	43	0	1	54	1.09
56858639--56858726	45	2.0	44	84	6	115	36	25	5	32	1.79
56864648--56864716	36	1.9	36	84	0	93	18	8	31	40	1.81
56869097--56869139	11	4.0	11	84	6	52	69	4	0	25	1.07
56869102--56869149	21	2.3	22	82	17	66	66	6	0	27	1.15
56871374--56871434	21	2.9	20	75	18	61	59	3	6	31	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56871702--56871758	3	19.3	3	92	3	98	66	0	1	31	1.02
56875036--56875063	13	2.2	13	100	0	56	85	7	0	7	0.73
56875438--56875484	12	4.0	12	80	2	51	29	2	6	61	1.32
56875443--56875503	3	20.0	3	79	3	68	32	4	3	59	1.35
56876115--56876337	108	2.0	110	87	3	326	30	15	19	34	1.93
56876163--56876495	181	1.9	176	87	4	497	29	16	18	36	1.92
56878666--56879083	210	2.0	210	100	0	836	38	17	24	19	1.93
56888454--56888838	46	8.7	45	69	14	187	30	20	21	27	1.98
56888499--56888769	87	3.1	87	71	10	282	30	21	20	27	1.98
56888408--56888838	174	2.4	174	92	1	700	30	20	21	28	1.98
56890340--56890397	3	19.0	3	78	3	62	32	5	3	58	1.37
56890331--56890377	21	2.2	22	85	11	71	27	2	6	63	1.30
56891010--56891429	114	3.8	110	88	3	585	30	15	20	33	1.93
56891970--56891996	2	13.5	2	100	0	54	51	0	0	48	1.00
56897800--56897861	29	2.2	29	79	2	72	64	4	8	22	1.40
56897991--56898051	29	2.1	28	84	3	77	26	13	18	42	1.86
56898262--56898331	22	3.2	21	84	9	79	32	25	1	40	1.65
56898271--56898332	22	2.8	22	85	9	81	33	24	1	40	1.65
56898303--56898361	30	2.0	30	89	0	91	32	33	1	32	1.68
56898418--56898481	29	2.2	29	83	5	85	40	0	1	57	1.08
56901061--56901559	28	17.9	28	81	10	517	46	21	0	31	1.57
56904744--56904981	124	1.9	124	90	1	379	31	22	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56904974--56905027	27	2.0	27	96	0	99	31	22	20	25	1.98
56914845--56914873	9	3.2	9	100	0	58	51	0	24	24	1.48
56918438--56918469	15	2.1	15	100	0	64	43	6	31	18	1.75
56919320--56919351	13	2.5	13	89	0	55	53	12	6	28	1.62
56919634--56919700	34	2.0	34	93	0	116	37	19	10	32	1.86
56927914--56927944	14	2.2	14	94	0	53	48	12	0	38	1.42
56930651--56930710	25	2.3	25	74	23	61	35	0	3	61	1.12
56932961--56933015	7	7.9	7	91	0	92	29	52	0	18	1.45
56933452--56934017	114	5.0	114	89	0	855	29	25	21	24	1.99
56935120--56935238	43	2.7	45	76	3	125	48	16	14	20	1.80
56942984--56943022	11	3.5	11	83	13	53	58	17	10	12	1.61
56946758--56946828	3	23.3	3	94	2	124	64	0	32	2	1.08
56949562--56949602	19	2.2	19	82	4	57	58	4	12	24	1.53
56949563--56949602	18	2.2	18	86	8	55	57	5	12	25	1.55
56953612--56953727	44	2.6	44	95	0	205	22	20	8	48	1.77
56955628--56955658	16	1.9	16	93	0	53	67	0	32	0	0.91
56960285--56960570	43	6.7	43	81	4	328	31	31	16	19	1.95
56960285--56960561	129	2.2	129	88	0	412	31	31	17	19	1.95
56962068--56962117	25	2.1	25	88	7	77	50	16	4	30	1.63
56972554--56972746	50	3.8	50	90	0	287	21	30	23	25	1.99
56972841--56972870	13	2.3	13	94	0	51	50	13	3	33	1.58
56976325--56976365	13	3.1	14	86	6	50	21	7	24	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56976422--56976473	25	2.0	26	85	3	70	25	3	21	50	1.65
56977799--56977854	16	3.5	16	76	7	60	64	5	7	23	1.40
56978833--56978926	47	2.0	47	89	0	143	29	14	22	32	1.94
56979418--56979599	9	19.6	9	71	21	101	46	15	0	37	1.47
56979457--56979536	16	5.1	16	73	24	80	45	21	0	33	1.52
56979442--56979567	47	2.7	47	90	4	209	46	17	0	36	1.49
56979427--56979520	25	3.4	30	77	16	91	45	17	0	37	1.48
56979406--56979604	31	6.3	31	75	17	187	47	15	0	37	1.45
56979545--56979719	94	1.9	92	85	9	246	45	12	2	39	1.57
56985213--56985410	87	2.3	87	85	5	258	39	15	31	13	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205