genome.fa.s19.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  113  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33897203--33897235	13	2.6	13	90	4	50	48	12	0	39	1.40
33900506--33900574	32	2.2	32	100	0	138	37	2	17	42	1.64
33903031--33903155	42	3.0	43	82	3	128	24	19	36	20	1.95
33903083--33903195	42	2.7	41	81	10	106	20	21	37	21	1.95
33904164--33904879	234	3.0	236	78	10	567	43	7	8	39	1.65
33904820--33904880	20	3.3	18	76	13	61	49	4	3	42	1.40
33905299--33906049	255	3.1	231	77	12	649	43	8	8	39	1.66
33905932--33905992	20	3.3	18	76	13	61	49	4	3	42	1.40
33905572--33906100	255	2.1	249	83	7	660	43	8	8	39	1.64
33906416--33906463	23	2.1	23	96	0	87	52	4	0	43	1.20
33912726--33912782	27	2.0	29	83	12	75	36	26	3	33	1.74
33916243--33916562	48	6.7	48	79	5	333	29	20	27	21	1.98
33916230--33916562	144	2.3	144	86	3	447	29	20	27	22	1.98
33919675--33919738	31	2.1	31	90	0	101	25	23	15	35	1.94
33919953--33920004	25	2.0	26	96	3	97	26	19	19	34	1.95
33920059--33920121	20	3.2	20	93	0	108	31	19	14	34	1.91
33927369--33927432	31	2.1	31	90	0	101	25	23	15	35	1.94
33927644--33927768	48	2.6	47	86	8	146	28	21	17	32	1.96
33927669--33927768	24	4.2	24	87	2	148	29	18	19	34	1.95
33927826--33927882	9	5.9	9	73	15	51	35	21	8	35	1.84
33927822--33927884	20	3.2	20	95	0	117	31	19	12	36	1.89
33927921--33927968	25	1.9	25	86	0	69	25	16	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33934453--33934719	48	5.6	48	80	6	290	27	17	29	25	1.98
33934453--33934725	96	2.9	94	84	4	350	27	17	28	25	1.98
33934436--33934719	144	2.0	143	84	5	376	27	17	29	25	1.98
33934818--33935103	143	2.0	142	96	0	527	30	9	22	37	1.85
33936058--33936097	21	1.9	21	84	0	53	12	37	25	25	1.91
33936495--33936731	63	3.8	62	80	2	215	34	25	17	22	1.96
33937279--33937358	11	7.4	12	75	17	70	73	0	23	2	0.95
33937281--33937354	7	10.9	7	77	17	68	72	0	24	2	0.97
33937280--33937358	22	3.7	20	79	15	79	73	0	24	2	0.96
33937285--33937346	16	3.8	17	71	14	58	72	0	24	3	0.99
33937309--33937366	26	2.2	26	82	11	66	72	0	22	5	1.04
33959136--33959193	29	2.1	28	84	12	75	18	8	17	55	1.67
33961052--33961162	27	4.1	26	87	6	134	20	23	21	34	1.97
33989906--33990018	27	4.2	27	89	3	158	19	24	21	34	1.96
33989905--33990018	55	2.1	54	88	6	169	19	24	21	35	1.96
33990112--33990936	412	2.0	412	99	0	1623	23	15	20	40	1.91
33990756--33991469	353	2.0	353	98	0	1396	30	11	19	38	1.88
34000963--34001225	40	6.6	39	86	4	278	25	27	21	25	1.99
34000963--34001225	120	2.2	119	82	4	307	25	27	21	25	1.99
34001157--34001234	40	1.9	41	82	10	97	26	28	20	24	1.99
34008940--34009108	40	4.2	40	84	3	189	26	26	20	27	1.99
34008940--34009088	79	1.9	79	82	2	190	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34021596--34021670	35	2.2	35	92	2	125	65	6	8	20	1.42
34021793--34021823	8	3.9	8	91	0	53	61	0	3	35	1.12
34024385--34024443	27	2.2	25	77	16	64	28	11	23	35	1.91
34024796--34024961	47	3.5	47	80	11	148	25	16	33	24	1.96
34029938--34029965	13	2.2	13	100	0	56	71	0	14	14	1.15
34033903--34033950	13	3.9	12	81	10	53	81	0	16	2	0.79
34033903--34033948	22	2.1	22	84	8	58	80	0	17	2	0.81
34044249--34044431	40	4.6	39	81	6	170	24	20	27	26	1.99
34044285--34044466	79	2.3	80	79	3	190	26	20	27	25	1.99
34044531--34044598	34	2.0	34	97	0	127	27	2	25	44	1.68
34052135--34052359	40	5.7	40	83	4	222	24	20	28	27	1.99
34056924--34056971	22	2.0	25	88	11	75	52	2	6	39	1.39
34057078--34057135	20	2.8	19	82	17	64	43	10	10	36	1.73
34059310--34059380	20	3.5	20	79	9	81	43	15	4	36	1.66
34061600--34061657	20	2.9	19	82	5	71	39	8	12	39	1.73
34067436--34067464	11	2.7	11	94	5	51	31	0	0	68	0.89
34073496--34073530	18	1.9	18	88	0	52	2	40	20	37	1.67
34076246--34076304	26	2.3	26	75	13	61	27	5	15	52	1.63
34077712--34077745	17	2.1	17	94	5	61	17	14	23	44	1.86
34078853--34078879	14	1.9	14	100	0	54	22	0	33	44	1.53
34079919--34080104	60	3.1	60	86	1	248	12	32	19	34	1.90
34079992--34080104	20	5.7	20	68	12	61	10	32	21	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34083341--34083379	4	9.8	4	82	0	51	53	5	20	20	1.64
34089530--34089580	23	2.2	24	82	3	59	37	0	1	60	1.08
34094194--34094245	26	2.0	26	100	0	104	42	19	11	26	1.85
34099729--34100261	140	3.8	140	84	3	698	51	12	12	23	1.75
34099729--34100261	278	1.9	282	88	1	813	51	12	12	23	1.75
34105690--34105736	18	2.6	18	96	3	85	61	0	2	36	1.08
34111203--34111237	3	11.7	3	100	0	70	68	0	0	31	0.90
34111935--34112020	29	3.0	29	75	11	79	38	4	23	33	1.75
34114245--34114349	43	2.5	43	80	7	108	27	18	20	33	1.96
34116812--34116870	31	1.9	31	96	0	109	32	11	6	49	1.66
34116992--34117037	18	2.5	19	75	10	51	56	0	8	34	1.30
34118973--34119029	29	1.9	30	82	3	71	57	7	5	29	1.47
34120288--34120319	14	2.3	15	89	10	50	62	15	6	15	1.51
34121450--34121586	69	2.0	68	97	1	256	40	24	8	26	1.84
34123592--34123779	45	4.2	45	89	4	247	34	27	17	21	1.95
34125209--34125302	29	3.1	29	81	4	107	38	18	9	34	1.83
34125469--34125535	29	2.3	31	80	15	79	37	11	14	35	1.84
34132994--34133019	9	2.9	9	100	0	52	88	0	0	11	0.52
34138163--34138226	27	2.4	28	89	5	105	53	15	1	29	1.52
34138887--34139024	49	2.8	49	85	1	179	23	34	18	24	1.96
34141853--34142083	114	2.0	114	93	0	390	40	5	7	46	1.55
34143532--34143570	17	2.4	16	82	4	51	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34143807--34143848	21	2.0	22	85	4	59	23	0	7	69	1.13
34150896--34150932	15	2.6	14	91	8	58	27	0	24	48	1.51
34152633--34152677	18	2.5	19	80	20	60	44	0	13	42	1.43
34156807--34156868	9	6.7	9	81	3	61	24	37	1	37	1.65
34164878--34164934	28	2.1	28	83	9	73	42	17	0	40	1.49
34168607--34169125	287	1.8	287	97	0	984	42	13	12	31	1.82
34168894--34169817	346	2.7	346	98	0	1776	44	13	14	27	1.83
34175705--34175764	30	2.0	30	100	0	120	30	3	16	50	1.62
34178354--34178893	28	19.4	28	70	6	184	27	13	28	30	1.95
34178443--34178602	83	1.9	83	83	5	207	26	14	28	30	1.95
34178368--34178734	111	3.3	111	74	5	303	29	14	27	28	1.95
34178417--34178893	139	3.4	138	76	4	447	27	13	28	30	1.94
34178307--34178893	56	10.6	56	70	8	206	27	13	28	30	1.95
34181896--34181940	18	2.5	18	89	7	65	15	2	24	57	1.49
34182012--34182057	23	2.0	23	82	0	56	39	0	6	54	1.26
34185511--34185555	18	2.5	18	96	0	81	13	22	26	37	1.91
34188027--34188079	20	2.7	20	75	0	52	24	7	11	56	1.60
34190949--34191144	50	3.8	50	82	4	194	27	20	29	22	1.99
34193497--34193562	31	2.1	31	88	0	96	45	7	12	34	1.70
34194197--34194241	20	2.3	20	96	3	83	44	0	0	55	0.99
34195578--34195606	15	1.9	15	100	0	58	20	20	27	31	1.98
34197745--34197814	35	2.0	35	97	0	131	37	18	14	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34201385--34201432	18	2.6	18	83	6	60	50	2	4	43	1.33
34204088--34204155	27	2.5	28	80	7	77	1	17	7	73	1.13
34204801--34204858	21	2.7	22	75	5	64	17	39	22	20	1.92
34210451--34210550	50	2.0	51	94	2	175	35	11	22	32	1.89
34213257--34213300	22	2.0	22	82	8	54	40	4	0	54	1.21
34218853--34218881	12	2.3	13	94	5	51	65	6	6	20	1.40
34220780--34220828	25	1.9	26	83	4	64	38	12	10	38	1.77
34224193--34224322	66	2.0	66	82	0	161	55	18	3	23	1.56
34232227--34232273	19	2.5	19	82	0	67	23	23	34	19	1.97
34235832--34236066	47	5.0	47	98	0	452	31	8	29	30	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205