genome.fa.s19.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  15  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4696773--4696820	21	2.3	21	74	0	51	39	6	10	43	1.64
4696438--4697091	333	2.0	333	95	0	1166	41	11	19	27	1.85
4698921--4699221	46	6.6	46	96	0	525	32	15	21	30	1.94
4703914--4703978	9	7.0	9	77	6	67	61	0	4	33	1.16
4703914--4703978	19	3.5	19	82	2	69	61	0	4	33	1.16
4704101--4704162	21	3.0	20	79	9	61	48	1	9	40	1.46
4704098--4704156	31	1.9	30	83	10	75	52	1	8	37	1.42
4705228--4705320	41	2.3	41	80	0	114	40	16	7	35	1.76
4741767--4741975	92	2.3	91	86	5	278	45	3	3	46	1.39
4741903--4741950	26	1.9	25	84	16	64	45	0	2	52	1.12
4741978--4742050	28	2.7	27	68	19	62	41	2	1	54	1.23
4742060--4742275	107	2.0	109	92	1	364	42	1	6	49	1.39
4742232--4742273	15	2.7	16	82	14	52	45	0	2	52	1.13
4742223--4742264	15	2.9	15	82	10	52	47	0	0	52	1.00
4742207--4742523	157	2.0	157	95	0	571	47	4	3	44	1.39
4742376--4742410	18	2.0	17	88	5	52	45	0	0	54	0.99
4742400--4742449	26	2.0	25	84	11	66	50	0	4	46	1.20
4742644--4742679	16	2.2	16	100	0	72	38	36	0	25	1.56
4742793--4742827	9	3.9	9	84	0	52	11	37	14	37	1.82
4758206--4758250	19	2.4	19	77	7	56	64	4	6	24	1.37
4761563--4761631	29	2.4	27	79	15	75	21	17	13	47	1.81
4767546--4767588	21	2.0	21	90	0	68	25	2	37	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4767569--4767601	16	2.1	16	94	0	57	33	0	36	30	1.58
4767580--4767674	45	2.1	44	88	1	136	34	5	27	32	1.79
4767836--4767870	18	2.0	17	88	5	52	54	0	0	45	0.99
4767794--4767866	27	2.7	27	76	8	76	52	2	0	45	1.15
4767755--4768026	144	1.9	147	94	3	487	46	3	2	47	1.34
4767980--4768014	18	2.0	17	88	5	52	54	0	0	45	0.99
4768000--4768178	55	3.1	54	64	22	128	49	7	2	41	1.43
4767995--4768182	61	3.1	61	68	14	190	49	6	2	41	1.41
4767963--4768185	120	1.9	120	97	0	419	49	6	2	42	1.40
4768100--4768134	18	2.0	17	88	5	52	60	0	0	40	0.97
4768175--4768221	17	2.9	16	78	18	53	46	2	6	44	1.40
4768194--4768227	17	2.0	17	94	0	59	50	0	5	44	1.26
4768260--4768454	93	2.1	92	88	4	286	47	4	4	44	1.41
4769855--4769881	11	2.5	11	100	0	54	51	18	7	22	1.70
4782604--4782632	3	9.7	3	100	0	58	68	0	31	0	0.89
4789246--4789307	21	3.0	21	90	4	101	38	6	12	41	1.69
4789246--4789316	19	3.6	19	86	3	97	38	8	12	40	1.74
4789640--4789665	13	2.0	13	100	0	52	15	0	0	84	0.62
4790076--4790132	24	2.3	26	82	11	75	33	7	3	56	1.43
4790797--4790993	98	2.0	98	95	0	358	27	10	25	37	1.88
4794910--4795090	90	2.0	90	98	0	353	33	15	24	26	1.95
4796911--4796944	6	5.8	6	93	6	61	85	0	14	0	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4796911--4796944	17	1.9	17	94	5	59	85	0	14	0	0.60
4797892--4798569	44	15.6	44	63	15	176	29	19	25	25	1.98
4797782--4798225	132	3.3	132	88	2	624	30	20	24	25	1.98
4798153--4798305	80	1.9	80	89	0	234	28	18	25	27	1.98
4798024--4798437	211	2.0	212	89	3	638	29	19	24	25	1.98
4798228--4798568	132	2.6	132	92	0	565	29	19	25	25	1.98
4798557--4799131	44	13.3	43	70	14	274	29	20	22	27	1.98
4798754--4799040	128	2.2	128	93	0	475	28	21	20	29	1.98
4798754--4799076	128	2.5	126	88	3	457	28	21	21	29	1.98
4818189--4818279	44	2.1	44	87	4	130	27	18	27	26	1.98
4818206--4818307	44	2.3	44	78	6	107	28	18	28	24	1.98
4818223--4818635	132	3.2	130	87	4	595	29	21	25	23	1.99
4818688--4819077	44	9.0	44	70	11	216	28	20	22	28	1.98
4818695--4818981	128	2.2	128	93	0	475	28	21	20	29	1.98
4818695--4819017	128	2.5	126	88	3	457	28	21	21	29	1.98
4819280--4819352	19	3.7	19	87	7	110	36	10	15	36	1.82
4820096--4820145	25	2.0	26	92	4	84	30	8	4	58	1.45
4821231--4821311	31	2.7	29	78	5	81	34	2	4	58	1.33
4836701--4836729	14	2.0	15	93	6	51	48	3	0	48	1.18
4836719--4836778	19	3.0	20	75	7	68	25	1	5	68	1.19
4839537--4839581	20	2.3	21	81	11	60	71	4	11	13	1.29
4845127--4845312	94	2.0	94	97	0	354	31	18	12	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4850127--4850199	23	3.2	23	80	0	74	24	19	15	41	1.89
4850135--4850224	23	3.9	23	75	5	67	24	22	14	38	1.91
4851067--4851172	21	5.1	21	75	13	112	19	22	23	33	1.97
4851066--4851166	20	4.9	21	74	13	102	17	21	24	35	1.95
4851066--4851172	41	2.6	41	95	0	187	19	22	24	33	1.97
4852336--4852366	15	2.1	15	100	0	62	6	0	32	61	1.21
4852395--4852485	34	2.7	33	81	11	103	46	0	12	41	1.41
4852553--4852826	125	2.2	125	86	0	368	36	15	17	31	1.91
4856307--4856345	18	2.2	18	95	0	69	41	10	25	23	1.86
4858095--4858134	11	3.6	11	86	6	55	52	0	25	22	1.47
4859242--4859296	13	4.3	13	73	11	51	60	3	0	36	1.15
4861863--4861899	17	2.1	18	90	5	58	29	24	0	45	1.53
4862601--4862691	9	10.6	9	76	20	72	79	7	1	12	0.99
4862604--4862691	8	11.4	8	75	17	55	80	6	1	11	0.94
4862603--4862683	36	2.2	36	89	6	119	81	6	1	11	0.92
4862601--4862672	18	3.9	18	81	15	85	79	8	1	11	1.00
4862623--4862684	6	9.8	6	77	10	52	83	4	1	9	0.85
4862623--4862720	47	2.1	45	83	7	117	78	5	6	10	1.08
4863539--4863582	8	5.6	8	94	5	81	77	0	11	11	1.00
4863539--4863582	15	2.8	16	93	6	81	77	0	11	11	1.00
4863539--4863589	15	3.3	15	86	5	75	76	0	11	11	1.02
4863539--4863590	23	2.3	23	93	3	88	75	0	11	13	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4865051--4866001	44	21.8	44	69	11	473	30	17	21	29	1.97
4865093--4865916	129	6.3	129	77	8	772	30	17	22	29	1.97
4865010--4865567	304	1.8	304	91	0	920	29	18	21	29	1.97
4865222--4866079	175	4.9	175	84	4	1151	30	18	22	29	1.97
4865222--4866107	348	2.5	346	81	5	1172	30	18	22	29	1.97
4867700--4867729	3	10.0	3	100	0	60	33	0	0	66	0.92
4868475--4868682	102	2.0	105	82	6	251	32	16	16	34	1.92
4869883--4870004	2	61.0	2	100	0	244	0	50	0	50	1.00
4870536--4871033	253	2.0	253	90	1	793	29	11	25	33	1.91
4873571--4873670	32	3.0	31	81	10	92	42	7	9	42	1.63
4873606--4873668	16	3.9	16	72	6	56	39	7	7	44	1.63
4879080--4879114	18	1.9	18	94	0	61	40	48	0	11	1.39
4879217--4879256	9	4.4	9	90	0	62	27	10	20	42	1.83
4882689--4882949	70	3.5	73	77	12	248	39	8	6	45	1.59
4902620--4902663	21	2.1	21	83	8	54	47	9	0	43	1.35
4917890--4917986	33	2.8	35	72	20	89	50	1	3	45	1.24
4920228--4920328	43	2.3	44	83	8	125	26	18	5	48	1.71
4920244--4920329	43	2.0	43	90	0	136	27	20	3	47	1.66
4924900--4924947	25	1.9	25	95	0	87	45	12	4	37	1.61
4930427--4930456	16	1.9	16	93	6	53	53	0	0	46	1.00
4933878--4933908	4	7.8	4	100	0	62	51	25	0	22	1.48
4935387--4935514	64	2.0	64	85	0	175	21	20	24	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4935570--4935677	26	4.3	26	81	5	116	20	22	19	37	1.94
4935570--4935677	51	2.2	50	81	3	119	20	22	19	37	1.94
4935929--4935976	20	2.2	20	85	10	60	47	2	20	29	1.61
4938251--4938309	32	1.9	30	86	6	82	40	6	1	50	1.39
4942821--4942883	32	2.0	32	87	6	92	28	0	7	63	1.22
4947668--4947730	32	2.0	32	87	6	92	28	0	7	63	1.22
4952802--4952929	64	2.0	64	84	0	166	21	20	23	34	1.97
4952985--4953092	26	4.3	26	81	5	116	20	22	19	37	1.94
4952985--4953092	51	2.2	50	81	3	119	20	22	19	37	1.94
4953562--4953619	22	2.7	21	78	7	71	31	3	18	46	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205