genome.fa.s19.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  153  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46121778--46121836	26	2.2	28	84	6	77	62	10	0	27	1.27
46121773--46122039	9	29.3	9	69	16	126	61	4	1	32	1.25
46121875--46121996	44	2.7	45	80	9	126	63	3	0	31	1.16
46123309--46123355	20	2.2	22	85	7	62	72	4	4	19	1.18
46124085--46124383	85	3.5	85	74	6	296	27	19	22	31	1.97
46124146--46124731	44	13.5	44	71	10	204	26	19	21	32	1.97
46124192--46124556	129	2.8	128	81	6	412	26	18	21	33	1.97
46124094--46124642	173	3.2	173	81	4	510	26	19	21	32	1.97
46124365--46124731	174	2.1	174	91	0	599	26	19	21	32	1.97
46124486--46124733	130	1.9	129	85	5	340	25	21	21	31	1.98
46135560--46135622	31	2.0	31	100	0	126	47	20	9	22	1.78
46136815--46136862	17	2.9	17	84	3	62	54	4	8	33	1.50
46137001--46137048	3	15.7	3	82	4	60	62	2	2	33	1.18
46137668--46137714	20	2.2	22	85	7	62	72	4	4	19	1.18
46138248--46138538	9	31.4	9	68	16	141	62	3	1	32	1.22
46138370--46138434	17	3.7	17	76	15	53	64	3	1	30	1.18
46138268--46138538	19	14.7	18	69	17	137	62	3	0	32	1.18
46138423--46138496	11	6.5	11	69	16	53	63	2	0	33	1.09
46138370--46138481	44	2.5	44	80	8	113	64	3	0	31	1.17
46138453--46138538	28	2.9	30	77	10	106	66	3	0	30	1.08
46139088--46139116	13	2.1	14	93	6	51	34	27	10	27	1.89
46139140--46139212	19	4.0	17	72	16	56	30	0	6	63	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46139293--46139348	25	2.2	26	78	15	64	32	3	1	62	1.23
46141267--46141897	114	5.5	113	88	4	722	30	18	24	26	1.98
46141902--46141993	17	5.5	17	92	2	152	33	0	10	55	1.35
46141902--46142011	17	6.3	17	68	24	52	33	0	10	56	1.33
46143591--46143630	20	2.0	20	85	9	55	22	40	10	27	1.86
46145086--46145451	9	42.2	9	71	16	265	45	21	1	31	1.60
46145086--46145429	52	6.6	50	76	9	269	45	21	1	31	1.60
46145090--46145451	79	4.6	77	84	7	417	45	21	1	31	1.61
46145185--46145321	16	8.0	16	72	19	55	48	21	0	30	1.50
46145267--46145321	19	3.1	19	85	12	64	50	20	0	29	1.48
46145118--46145451	130	2.6	127	78	10	282	45	21	1	31	1.59
46145084--46145451	104	3.5	101	79	10	307	45	22	1	30	1.61
46147176--46147215	18	2.2	18	100	0	80	37	0	5	57	1.21
46154531--46154574	23	1.9	23	81	9	54	52	0	4	43	1.22
46155423--46155453	15	2.1	15	100	0	62	32	19	6	41	1.77
46156829--46156899	33	2.1	33	84	5	88	56	1	8	33	1.38
46156957--46157039	39	2.1	39	84	4	105	54	6	7	32	1.52
46157110--46157139	12	2.5	12	94	0	51	43	0	16	40	1.48
46158595--46158678	43	2.0	43	85	0	114	29	25	14	30	1.95
46158985--46159485	89	5.6	89	85	0	617	23	21	23	30	1.99
46160600--46160702	42	2.5	42	83	0	125	29	24	12	33	1.92
46160784--46160809	8	3.2	8	100	0	52	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46160920--46160952	14	2.3	15	89	5	50	24	33	15	27	1.95
46163325--46163429	51	2.0	52	89	5	160	20	16	33	29	1.95
46165980--46166062	39	2.1	39	84	4	105	54	6	7	32	1.52
46166229--46166280	27	1.9	27	84	0	68	50	7	9	32	1.64
46167944--46168026	39	2.1	39	84	4	105	54	6	7	32	1.52
46168193--46168244	27	1.9	27	84	0	68	50	7	9	32	1.64
46174239--46174275	19	1.9	19	88	0	56	35	5	0	59	1.20
46179403--46179505	39	2.6	39	87	6	145	29	19	22	29	1.98
46179338--46179505	39	4.3	39	76	8	144	29	19	23	27	1.98
46179339--46179505	79	2.1	78	82	5	194	29	19	23	27	1.98
46179482--46179701	116	1.9	115	83	2	289	28	20	22	29	1.98
46180008--46180188	7	25.7	7	69	7	62	18	2	34	44	1.64
46180127--46180183	22	2.6	21	78	8	60	21	7	36	35	1.80
46180591--46180668	23	3.3	22	69	23	59	15	41	3	39	1.65
46181844--46181938	34	2.9	32	89	7	138	31	16	11	40	1.85
46182074--46182186	28	3.7	29	71	22	86	38	2	8	49	1.48
46182029--46182201	66	2.6	66	89	0	258	36	2	8	52	1.47
46182596--46183174	9	64.9	9	71	15	251	47	16	0	35	1.53
46182601--46183174	63	9.2	63	76	13	435	47	16	0	35	1.53
46182786--46183045	133	1.9	138	88	5	404	45	16	1	37	1.55
46182919--46183060	52	2.7	52	90	3	214	47	17	0	34	1.48
46188683--46188722	21	1.9	21	89	0	62	40	15	42	2	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46189018--46189107	43	2.1	43	85	2	119	30	16	22	31	1.96
46189173--46189322	43	3.5	43	82	0	201	30	20	22	26	1.98
46189145--46189324	86	2.1	86	81	2	209	32	20	21	26	1.97
46197739--46197784	24	1.9	24	90	0	74	47	4	6	41	1.49
46197987--46198033	24	2.0	24	100	0	94	40	0	8	51	1.33
46200385--46200607	111	2.0	111	94	0	392	30	13	11	45	1.78
46202232--46202265	16	2.1	16	88	0	50	41	2	11	44	1.56
46202641--46202681	18	2.2	20	82	8	50	31	2	17	48	1.60
46203778--46203812	16	2.2	16	89	0	52	25	17	11	45	1.81
46204279--46204318	19	2.0	20	85	4	55	25	20	7	47	1.75
46208476--46209080	89	6.8	89	92	0	868	30	17	25	27	1.97
46210691--46210724	16	2.1	16	88	0	50	41	2	11	44	1.56
46211097--46211139	20	2.2	20	82	0	50	30	2	16	51	1.57
46220362--46220429	21	3.2	21	89	0	109	2	44	19	33	1.66
46220789--46220830	7	6.1	7	86	5	59	45	19	0	35	1.50
46220791--46220834	20	2.1	21	91	4	72	50	15	0	34	1.45
46220879--46220920	7	6.1	7	80	5	50	47	19	0	33	1.49
46220881--46220924	20	2.1	21	87	4	63	52	15	0	31	1.44
46220764--46220951	90	2.1	90	91	2	306	47	19	5	27	1.72
46221200--46221241	7	6.1	7	80	5	50	42	19	2	35	1.64
46222059--46222309	84	3.0	83	90	3	369	31	20	16	31	1.95
46222820--46222864	21	2.1	21	87	0	63	37	35	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46222956--46222994	20	1.9	20	89	5	60	38	51	0	10	1.36
46222964--46222999	13	2.6	14	91	4	56	36	52	0	11	1.37
46223040--46223104	25	2.6	25	92	0	112	49	36	0	13	1.43
46222865--46223076	116	1.8	118	79	8	254	45	28	1	24	1.62
46223638--46223929	41	7.1	41	75	7	213	33	26	17	22	1.96
46223638--46223932	82	3.6	81	78	11	280	33	26	17	22	1.96
46223714--46223942	123	1.9	124	82	4	293	32	27	16	24	1.96
46228278--46228797	115	4.5	111	73	13	389	30	18	21	28	1.97
46228228--46228790	228	2.5	229	79	8	569	32	18	21	28	1.97
46229109--46229162	7	7.7	7	77	6	56	18	0	38	42	1.50
46229113--46229163	22	2.4	21	80	3	57	19	0	41	39	1.52
46229078--46229153	29	2.4	34	80	12	90	19	0	35	44	1.51
46229550--46229595	23	2.0	23	83	12	58	45	0	2	52	1.13
46230333--46230428	44	2.2	44	82	0	120	26	33	5	35	1.79
46232061--46232151	32	2.7	34	84	8	123	34	3	2	60	1.25
46232158--46232213	16	3.3	17	80	9	78	37	16	3	42	1.65
46232163--46232235	34	2.3	33	84	11	91	39	16	2	41	1.63
46232263--46232300	19	2.0	19	94	0	67	44	0	0	55	0.99
46232395--46232430	10	3.7	10	92	3	56	58	13	0	27	1.36
46232405--46232740	95	3.5	95	90	1	496	51	17	2	27	1.60
46232467--46232629	52	3.3	52	63	18	130	46	20	3	30	1.66
46232660--46232688	12	2.4	12	100	0	58	51	17	0	31	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46232760--46232786	12	2.2	12	100	0	54	51	14	0	33	1.43
46232771--46232837	19	3.7	19	79	18	88	50	17	1	29	1.55
46232771--46232920	9	16.9	9	79	13	134	46	22	2	30	1.63
46235731--46236107	191	2.0	191	95	0	682	38	16	11	33	1.85
46238801--46238839	17	2.3	17	95	0	69	41	28	20	10	1.85
46238822--46239072	42	5.9	42	85	3	301	28	20	19	31	1.97
46238845--46239080	85	2.8	84	84	8	298	27	19	19	32	1.96
46241936--46241973	20	2.0	20	89	5	60	13	18	0	68	1.21
46242385--46242438	21	2.7	19	75	13	54	27	1	1	68	1.10
46249528--46249570	3	14.3	3	100	0	86	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205