genome.fa.s19.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  163  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48690150--48690207	29	2.0	30	83	10	75	46	1	0	51	1.11
48690140--48690217	29	2.9	26	74	23	72	43	1	0	55	1.08
48690222--48690256	15	2.2	16	95	5	63	62	0	0	37	0.95
48690282--48690336	17	3.2	17	71	19	51	54	1	0	43	1.10
48698600--48698645	23	2.0	24	86	4	67	15	2	8	73	1.16
48700871--48700941	26	2.7	26	86	4	90	39	23	22	14	1.91
48701501--48701644	17	8.4	17	77	8	121	47	9	11	30	1.72
48701466--48701663	35	5.7	35	76	7	172	46	10	11	31	1.73
48701466--48701662	70	2.8	69	78	10	193	47	10	11	31	1.72
48701839--48701885	20	2.5	19	77	16	53	44	8	17	29	1.78
48702247--48702343	8	12.0	8	75	14	92	0	19	0	80	0.71
48702243--48702341	15	6.5	15	79	9	103	0	19	0	80	0.71
48702250--48702343	43	2.3	41	84	12	115	0	20	0	79	0.73
48702473--48702546	32	2.3	31	84	11	87	1	6	21	70	1.18
48702663--48702694	3	10.3	3	93	6	55	0	31	0	68	0.90
48702650--48702692	19	2.3	19	88	8	61	0	25	0	74	0.82
48702760--48702809	10	5.2	10	80	7	59	0	30	0	70	0.88
48702764--48702806	19	2.3	19	88	11	63	0	30	0	69	0.88
48703057--48703173	30	3.9	29	80	7	119	45	3	21	29	1.68
48703172--48703202	13	2.3	14	94	5	55	29	0	0	70	0.87
48703315--48703562	54	4.6	53	87	4	329	18	20	20	40	1.91
48703315--48703562	81	3.1	79	85	8	331	18	20	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48703315--48703562	27	9.2	27	85	5	283	18	20	20	40	1.91
48703684--48703716	17	1.9	17	88	11	50	18	27	6	48	1.71
48715979--48716044	26	2.6	25	83	9	80	33	16	10	39	1.83
48715995--48716044	25	2.0	26	88	4	75	36	18	10	36	1.84
48720791--48720835	6	7.7	6	82	5	56	80	2	15	2	0.92
48725223--48725313	44	2.1	44	91	0	146	43	6	2	47	1.41
48726731--48727000	89	3.0	89	97	1	504	37	16	14	32	1.88
48727073--48727111	14	2.7	14	84	4	51	20	2	17	58	1.50
48727866--48727924	25	2.3	25	91	2	91	40	22	10	27	1.85
48731638--48731869	43	5.4	43	86	5	292	32	27	15	24	1.95
48737264--48737293	10	3.1	10	95	4	53	26	0	0	73	0.84
48737909--48737993	40	2.1	40	85	8	111	51	12	4	30	1.60
48737909--48738034	40	3.2	40	78	9	98	48	14	6	30	1.68
48738068--48738229	86	1.9	86	87	2	236	43	14	7	34	1.74
48738658--48738879	72	3.0	72	94	4	374	33	5	42	18	1.73
48739640--48739693	14	3.7	14	87	5	63	50	29	0	20	1.49
48739646--48739693	14	3.4	14	88	2	69	50	29	0	20	1.49
48739972--48740124	41	3.7	41	82	6	202	30	25	20	22	1.98
48746846--48746913	28	2.4	28	80	4	75	26	39	19	14	1.90
48747057--48747120	21	3.0	20	80	13	65	29	18	15	35	1.92
48747037--48747120	43	1.9	44	82	2	107	33	19	14	33	1.91
48748187--48748280	23	4.1	23	87	0	143	22	24	4	48	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48752691--48752784	23	4.1	23	84	0	134	22	23	5	48	1.70
48753254--48753324	34	2.1	34	97	0	133	18	16	21	43	1.88
48753712--48753746	11	3.1	11	87	4	52	42	11	11	34	1.77
48757548--48757572	9	2.8	9	100	0	50	24	0	8	68	1.16
48757848--48758043	98	2.0	97	94	1	347	28	9	25	37	1.87
48758725--48758757	17	1.9	17	93	0	57	66	12	6	15	1.42
48763731--48763776	19	2.4	19	85	3	56	32	17	2	47	1.60
48771881--48772004	44	2.8	43	79	7	133	28	14	25	32	1.95
48771969--48772151	95	1.9	95	83	4	235	31	15	21	31	1.94
48773244--48773364	27	4.5	27	87	0	179	42	21	20	14	1.88
48773244--48773378	54	2.5	54	84	2	173	40	22	19	17	1.91
48773552--48773602	26	2.0	26	84	0	66	17	21	21	39	1.93
48784341--48784418	35	2.2	35	80	14	90	43	42	6	7	1.59
48785701--48785731	4	7.8	4	92	0	53	25	3	0	70	1.02
48787763--48787791	4	7.2	4	100	0	58	75	0	0	24	0.80
48791214--48791250	3	12.3	3	100	0	74	64	0	0	35	0.94
48794586--48794769	63	2.9	63	80	4	183	28	29	18	22	1.97
48795279--48795335	28	2.0	28	86	6	80	71	0	24	3	1.01
48804128--48804171	18	2.4	18	81	7	54	63	4	4	27	1.33
48804802--48804857	26	2.2	26	83	6	69	30	1	3	64	1.21
48805445--48805474	15	2.0	15	93	0	51	23	13	0	63	1.29
48805466--48805501	17	2.1	17	89	0	54	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48806077--48806101	5	5.0	5	100	0	50	40	40	0	20	1.52
48809215--48809645	108	4.0	108	94	1	722	34	18	16	29	1.93
48809975--48810009	16	2.2	16	89	0	52	60	0	0	40	0.97
48811451--48811485	11	3.2	11	100	0	70	45	17	0	37	1.48
48811508--48811653	9	16.4	9	83	5	190	46	18	0	34	1.54
48816226--48816553	42	7.7	42	82	5	367	25	21	20	32	1.98
48816229--48816553	127	2.5	127	82	6	390	25	21	20	32	1.98
48817948--48817983	14	2.6	15	83	16	51	41	11	2	44	1.54
48819233--48819308	40	1.9	40	86	5	109	21	28	27	22	1.99
48821796--48821980	43	4.3	42	79	6	162	28	29	17	24	1.98
48822328--48822440	21	5.4	21	81	0	109	7	38	15	38	1.75
48822328--48822429	42	2.4	42	81	0	123	6	39	15	38	1.74
48822411--48822557	66	2.2	66	87	4	208	14	27	17	40	1.88
48822431--48822581	66	2.3	65	86	5	196	15	24	18	41	1.90
48827791--48828125	9	39.8	9	71	16	238	31	1	20	46	1.61
48827813--48828119	16	18.8	16	74	14	158	31	1	20	47	1.58
48827797--48828125	25	13.0	25	76	13	161	31	1	20	46	1.61
48827891--48827955	34	1.9	34	90	0	103	32	1	18	47	1.58
48827899--48828085	34	6.0	33	70	21	136	31	1	20	45	1.61
48827796--48828116	118	2.7	117	91	6	510	31	1	19	47	1.59
48828172--48828491	121	2.6	120	94	2	559	45	6	7	40	1.57
48828519--48828607	18	4.8	18	79	14	101	41	0	12	46	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48828521--48828625	31	3.5	31	71	21	100	42	0	13	43	1.43
48828648--48828739	13	6.9	13	72	18	82	43	2	9	44	1.49
48828631--48828739	40	2.7	40	91	0	173	42	2	11	44	1.54
48828774--48828806	10	3.1	11	86	8	50	36	21	9	33	1.85
48829928--48829959	12	2.7	12	95	0	55	68	15	9	6	1.36
48830374--48830434	16	3.8	16	82	4	86	59	13	4	22	1.53
48830373--48830437	33	2.0	33	100	0	130	58	12	6	23	1.56
48830756--48830794	14	2.8	14	80	0	51	5	10	7	76	1.13
48832705--48832825	42	2.9	42	85	3	156	33	29	18	19	1.95
48832856--48832970	40	2.9	38	84	7	140	20	21	19	38	1.94
48832856--48833010	40	3.9	38	79	9	132	20	21	18	39	1.93
48835963--48836249	42	6.8	42	95	0	486	33	21	22	22	1.98
48835963--48836336	84	4.5	82	86	5	444	31	21	21	26	1.98
48835963--48836336	126	3.0	126	88	1	482	31	21	21	26	1.98
48836405--48836438	14	2.4	14	95	0	59	52	20	8	17	1.71
48836662--48836732	21	3.4	21	80	0	79	2	45	18	33	1.64
48842183--48842697	7	60.0	9	62	34	98	33	0	20	45	1.53
48842228--48842707	25	19.1	25	89	5	695	33	0	20	46	1.53
48842228--48842707	76	6.4	76	91	5	762	33	0	20	46	1.53
48842595--48842707	53	2.2	51	96	3	208	35	0	18	46	1.50
48842743--48842969	74	3.1	75	98	1	440	41	6	1	50	1.37
48843115--48843185	13	5.5	13	86	0	106	50	2	7	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48843114--48843185	26	2.8	26	100	0	144	50	2	6	40	1.44
48843190--48843488	17	16.6	17	70	23	161	42	1	11	43	1.51
48843157--48843497	57	6.5	57	75	20	375	44	2	10	42	1.51
48843207--48843317	44	2.7	40	86	10	177	44	1	10	43	1.50
48843174--48843476	101	3.0	100	94	4	533	44	1	10	42	1.50
48843308--48843414	40	2.7	40	94	2	189	43	1	11	42	1.51
48843157--48843465	97	3.1	97	93	4	521	44	2	10	42	1.51
48844831--48844870	11	3.7	11	93	3	64	27	27	10	35	1.89
48845397--48845426	14	2.1	14	100	0	60	53	6	13	26	1.64
48846740--48846791	27	1.9	27	88	0	77	50	9	0	40	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205