genome.fa.s19.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  31  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9303911--9303948	11	3.5	11	85	7	51	31	0	15	52	1.43
9304953--9304994	20	2.1	20	100	0	84	23	0	35	40	1.55
9308133--9308308	25	7.1	25	69	5	106	31	21	28	19	1.97
9308376--9308444	24	2.8	24	80	2	66	40	20	24	14	1.90
9314563--9314637	25	3.0	26	84	7	84	33	22	24	20	1.97
9314590--9314741	25	6.1	25	73	10	87	30	20	28	20	1.97
9314821--9314876	23	2.3	23	81	6	58	39	19	21	19	1.93
9315114--9315153	21	1.9	21	84	0	53	45	22	0	32	1.53
9332474--9332529	27	2.1	27	100	0	112	35	17	14	32	1.90
9336279--9336414	68	2.0	68	91	2	220	33	19	16	30	1.93
9338741--9338816	40	1.9	40	94	0	134	21	31	18	28	1.97
9338740--9338827	40	2.2	40	87	0	131	20	31	17	30	1.95
9338821--9338895	20	3.8	20	72	13	73	20	37	17	25	1.94
9338804--9338896	40	2.3	40	81	0	114	22	35	15	26	1.94
9348583--9348619	4	9.2	4	100	0	74	27	0	24	48	1.51
9349447--9349640	61	3.2	59	67	13	153	19	18	23	38	1.93
9349446--9349668	120	1.9	119	82	7	281	20	17	22	38	1.93
9360044--9360119	26	2.9	27	76	9	77	21	17	21	40	1.91
9360080--9360129	26	1.9	26	84	8	66	24	16	20	40	1.91
9360074--9360146	25	2.9	25	75	13	69	24	16	19	39	1.91
9363263--9363311	21	2.4	20	82	3	62	36	2	4	57	1.30
9363268--9363314	23	2.2	20	85	11	58	38	0	4	57	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9364051--9364080	15	2.0	15	93	0	51	30	6	3	60	1.39
9365410--9365493	41	2.0	41	100	0	168	30	20	14	34	1.92
9366071--9366142	36	2.0	36	97	0	135	34	26	11	27	1.90
9368123--9368159	15	2.5	15	87	12	58	32	0	2	64	1.07
9368313--9368366	10	5.6	9	78	12	54	62	1	1	33	1.16
9380624--9380695	17	4.4	17	73	25	57	37	0	0	62	0.95
9380666--9380695	15	2.0	15	93	0	51	36	0	0	63	0.95
9396105--9396160	18	3.1	18	80	17	62	37	0	1	60	1.07
9397927--9397956	10	3.0	10	100	0	60	40	0	20	40	1.52
9402788--9402864	27	2.9	27	98	0	145	24	23	32	19	1.97
9403173--9403235	19	3.4	19	78	12	85	36	9	1	52	1.44
9403452--9403510	19	3.2	19	82	4	84	49	0	10	40	1.37
9404149--9404212	26	2.4	27	89	5	94	46	1	10	40	1.48
9404499--9404564	28	2.4	28	94	0	114	48	1	10	39	1.47
9411391--9411434	24	1.9	23	86	9	63	43	4	6	45	1.51
9439202--9439348	43	3.5	43	79	5	174	31	27	17	23	1.97
9439194--9439364	43	4.0	43	75	8	161	33	27	16	22	1.95
9465918--9466037	40	3.0	40	85	3	154	30	18	17	34	1.94
9466629--9466672	22	1.9	24	86	9	65	43	2	13	40	1.57
9469885--9469910	12	2.2	12	100	0	52	50	15	19	15	1.79
9478484--9478543	18	3.3	18	75	13	52	23	30	3	43	1.70
9485453--9485560	53	2.0	53	96	0	198	32	22	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9490116--9490396	81	3.5	81	82	4	316	18	18	16	46	1.85
9490116--9490407	27	10.8	27	76	5	259	18	18	16	45	1.85
9496167--9496597	27	16.0	27	84	3	485	17	17	19	44	1.87
9500972--9501008	11	3.4	11	96	0	65	18	8	43	29	1.79
9501811--9501851	20	2.0	20	95	0	73	19	17	26	36	1.94
9502318--9502359	21	2.0	21	100	0	84	19	19	28	33	1.96
9503832--9504044	43	5.0	42	72	6	153	30	26	17	25	1.98
9503960--9504043	44	1.9	43	82	2	105	26	27	17	28	1.98
9509941--9510163	16	12.9	16	70	16	135	34	3	17	44	1.66
9509939--9510311	25	15.5	25	65	22	117	35	4	16	43	1.67
9509939--9510311	9	42.3	9	68	19	123	35	4	16	43	1.67
9510060--9510116	20	2.8	21	78	7	55	31	1	15	50	1.54
9509955--9510430	143	3.3	143	94	3	843	35	3	16	44	1.66
9510203--9510259	20	2.8	20	74	10	62	33	1	15	49	1.55
9510243--9510304	16	3.7	18	79	12	69	38	0	17	43	1.49
9510379--9510432	16	3.3	16	89	2	81	33	0	16	50	1.46
9510277--9510548	126	2.2	126	85	5	345	35	4	16	43	1.69
9511841--9511867	14	1.9	14	100	0	54	51	0	0	48	1.00
9512032--9512091	22	2.7	23	71	19	56	51	15	8	25	1.70
9512553--9512601	23	2.1	23	88	0	71	24	2	38	34	1.67
9512554--9512601	11	4.3	11	76	5	51	25	2	39	33	1.67
9512897--9512932	16	2.2	16	90	0	54	22	5	2	69	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9513487--9513519	8	4.2	8	84	7	50	51	33	0	15	1.43
9513470--9513728	7	36.9	7	72	14	92	40	44	0	13	1.49
9513467--9513743	133	2.1	133	100	0	554	40	45	0	13	1.49
9513620--9513652	8	4.2	8	84	7	50	51	33	0	15	1.43
9513603--9513652	15	3.5	15	78	8	59	44	38	0	18	1.50
9514502--9514636	42	3.2	42	66	15	125	35	30	16	17	1.92
9514500--9514659	84	1.9	84	97	0	302	35	31	16	16	1.92
9517820--9518186	134	2.7	133	79	2	421	32	18	12	36	1.88
9518091--9518284	98	2.0	98	84	0	253	31	18	12	36	1.89
9517939--9518367	232	1.9	231	85	0	597	32	16	13	37	1.88
9529532--9529684	21	7.4	21	75	7	134	43	15	20	20	1.88
9529532--9529684	41	3.7	42	84	3	168	43	15	20	20	1.88
9532184--9532233	23	2.2	23	85	0	64	20	32	36	12	1.89
9538414--9538452	4	9.8	4	100	0	78	25	0	23	51	1.49
9542105--9542189	17	5.0	16	75	9	71	17	21	30	30	1.96
9545173--9545295	46	2.7	46	83	3	151	19	21	14	44	1.86
9545274--9545470	45	4.5	45	78	7	129	24	18	17	39	1.92
9545303--9545423	41	2.9	41	81	7	118	26	18	19	36	1.94
9545545--9545579	15	2.2	17	90	10	56	60	5	2	31	1.35
9547745--9547782	20	1.9	20	94	0	67	34	5	28	31	1.80
9550990--9551041	24	2.2	24	85	0	68	38	3	7	50	1.50
9554529--9554604	23	3.3	23	86	0	116	21	19	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9557967--9558018	24	2.2	24	89	0	77	36	3	9	50	1.54
9558256--9558328	36	2.0	36	97	0	137	34	17	17	30	1.94
9560253--9560556	124	2.5	125	82	2	391	44	8	19	28	1.80
9570874--9570904	15	2.1	15	100	0	62	35	25	0	38	1.56
9574156--9574209	24	2.3	24	81	12	67	53	7	1	37	1.40
9574921--9574951	6	5.2	6	92	0	53	32	3	0	64	1.09
9577425--9577472	23	2.1	23	100	0	96	50	16	4	29	1.64
9580630--9580692	32	2.0	32	96	0	117	65	9	7	17	1.46
9580826--9580859	3	11.7	3	93	6	61	70	0	0	29	0.87
9580980--9581025	19	2.5	20	75	13	53	73	2	0	23	0.94
9581190--9581314	64	2.0	64	84	6	164	12	33	23	31	1.91
9583844--9583876	12	2.8	12	90	4	50	81	6	0	12	0.85
9586816--9586986	86	2.0	85	97	0	315	67	4	9	16	1.35
9586831--9586974	43	3.3	43	64	7	112	66	3	9	20	1.34
9598626--9598715	27	3.3	27	84	0	117	20	22	17	40	1.92
9598725--9598960	74	3.2	74	86	2	321	30	22	13	33	1.93
9599001--9599086	45	1.9	45	87	0	127	22	19	13	44	1.86
9603160--9603192	17	1.9	18	88	11	52	42	9	0	48	1.35
9604539--9604658	37	3.5	36	84	12	157	35	27	9	28	1.87
9604597--9604658	31	2.0	31	96	0	115	37	25	8	29	1.85
9604855--9605006	41	3.7	41	84	5	182	22	28	20	28	1.98
9618716--9618972	62	4.1	62	98	0	487	40	17	17	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9625763--9625818	22	2.5	22	100	0	112	37	0	0	62	0.95
9625774--9625814	12	3.6	12	74	12	50	41	0	0	58	0.98
9627565--9627807	129	1.9	129	88	1	371	23	14	18	42	1.87
9628584--9628942	107	3.3	107	99	0	700	30	19	20	29	1.97
9638736--9638767	6	5.3	6	96	0	55	0	37	0	62	0.95
9640841--9640908	33	2.1	33	97	0	127	36	17	10	35	1.84
9641988--9642646	332	2.0	332	100	0	1318	38	17	15	28	1.91
9644701--9644755	29	1.9	29	92	3	94	43	0	16	40	1.48
9644790--9644877	29	3.0	29	74	1	86	42	4	20	32	1.72
9648269--9648394	58	2.2	59	88	1	182	50	10	4	34	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205