genome.fa.s19.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  157  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46987458--46987640	37	4.7	37	66	19	104	50	4	1	43	1.32
46987516--46987704	59	3.2	59	74	11	213	53	2	1	42	1.21
46987458--46987705	120	2.1	120	98	0	478	52	3	1	43	1.26
46988595--46988621	12	2.2	12	100	0	54	55	7	0	37	1.28
46997956--46998005	15	3.3	15	85	0	64	38	18	32	12	1.87
47001417--47001444	5	5.6	5	100	0	56	42	0	17	39	1.50
47003184--47003255	30	2.4	29	84	9	83	54	0	1	44	1.08
47003672--47003720	20	2.5	20	83	6	64	51	6	6	36	1.52
47006338--47006563	43	5.3	43	89	3	341	27	31	16	23	1.96
47006338--47006563	85	2.7	86	90	2	350	27	31	16	23	1.96
47007074--47007128	21	2.6	21	100	0	110	34	18	18	29	1.94
47009551--47009664	57	2.0	57	87	3	167	27	22	14	35	1.94
47011048--47011314	110	2.4	111	83	8	310	42	24	2	30	1.67
47011200--47011266	32	2.1	32	91	0	107	31	38	4	25	1.76
47011360--47011393	7	4.9	7	96	0	50	29	50	0	20	1.49
47012250--47012367	41	2.9	41	88	2	175	30	24	23	21	1.99
47012421--47012536	40	2.9	38	78	6	124	24	20	22	32	1.98
47016785--47016869	42	2.0	42	97	0	161	32	5	2	58	1.35
47020128--47020193	32	2.0	34	91	8	109	36	21	22	19	1.95
47029804--47029848	21	2.1	21	100	0	90	8	26	4	60	1.46
47036181--47036214	17	1.9	18	94	5	61	2	29	35	32	1.73
47036789--47036829	18	2.3	18	86	0	55	29	2	46	21	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47036789--47036860	18	3.7	18	71	20	54	29	4	41	25	1.74
47038479--47038596	37	3.5	36	81	13	135	33	27	10	28	1.89
47038781--47038956	41	4.3	41	92	0	289	23	28	19	28	1.98
47038787--47038956	82	2.1	82	98	0	331	24	28	18	28	1.98
47039170--47039213	17	2.7	17	89	6	65	43	18	2	36	1.63
47040897--47040968	18	3.7	18	71	20	54	25	43	4	27	1.73
47040903--47040955	24	2.4	22	75	18	56	18	50	3	26	1.64
47041795--47041828	17	1.9	18	94	5	61	32	38	29	0	1.58
47045444--47045487	21	2.1	21	91	0	70	29	20	29	20	1.98
47056701--47056792	42	2.2	41	79	11	100	21	28	33	16	1.95
47060769--47060820	9	5.8	9	86	8	61	50	15	9	25	1.74
47060760--47060800	18	2.3	18	86	0	55	53	12	7	26	1.64
47060760--47060819	27	2.2	27	82	5	68	50	15	8	26	1.72
47060956--47060999	18	2.4	18	84	0	52	13	0	40	45	1.44
47061073--47061257	82	2.3	82	100	0	370	41	23	14	20	1.89
47067524--47067558	6	5.7	6	93	6	61	54	31	0	14	1.40
47067524--47067558	13	2.8	12	95	4	61	54	31	0	14	1.40
47088009--47088034	5	5.2	5	100	0	52	0	19	61	19	1.35
47090253--47090308	22	2.5	22	77	5	60	23	3	8	64	1.38
47090261--47090301	11	3.7	11	83	0	55	26	4	2	65	1.25
47096128--47096160	2	16.5	2	93	0	57	3	48	0	48	1.17
47098872--47098960	43	2.1	43	97	0	169	34	6	21	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47101491--47101527	17	2.2	17	90	9	58	35	0	8	56	1.29
47103121--47103161	6	7.2	6	97	2	68	51	29	0	19	1.47
47103611--47103690	30	2.7	31	86	7	105	56	1	3	38	1.25
47104040--47104187	30	5.0	31	86	6	193	34	22	2	40	1.66
47104050--47104187	58	2.3	60	87	7	210	35	23	1	39	1.64
47104040--47104209	88	1.9	88	83	7	220	34	22	2	41	1.67
47104390--47104443	27	2.0	27	85	0	72	72	14	11	1	1.21
47104685--47104745	32	1.9	32	93	0	104	77	3	19	0	0.91
47104685--47104745	11	5.7	10	75	19	52	77	3	19	0	0.91
47104684--47104741	16	3.7	15	76	19	64	75	3	20	0	0.94
47104846--47104919	4	18.0	4	77	13	62	74	0	25	0	0.82
47104849--47104919	13	5.4	13	81	8	74	74	0	25	0	0.82
47104846--47104936	7	13.0	7	76	12	53	76	0	20	2	0.88
47104862--47104919	18	3.3	18	77	18	59	74	0	25	0	0.82
47104846--47104921	31	2.5	31	82	8	93	75	0	25	0	0.81
47104847--47104938	17	5.2	18	73	17	68	78	0	19	2	0.86
47104847--47104927	6	13.5	6	69	19	53	76	0	22	1	0.86
47105364--47105471	53	2.0	53	98	0	207	46	11	9	33	1.71
47105597--47105639	19	2.2	20	92	8	72	53	2	6	37	1.41
47105581--47105695	56	2.1	56	81	6	135	40	12	8	39	1.73
47105758--47105799	18	2.4	18	85	14	61	38	9	4	47	1.57
47105892--47105933	20	2.0	21	86	4	59	42	9	9	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47105911--47105980	18	3.9	18	79	3	70	30	14	10	45	1.77
47105999--47106223	17	12.9	17	77	14	210	29	11	12	47	1.76
47105999--47106232	35	6.7	34	80	10	251	30	11	11	46	1.76
47106009--47106232	69	3.2	68	85	9	301	29	11	12	46	1.76
47109230--47109276	18	2.6	18	86	0	67	17	2	40	40	1.61
47113985--47114040	21	2.7	21	72	10	51	50	16	14	19	1.79
47119810--47119945	46	3.0	45	92	4	227	36	10	25	27	1.88
47126493--47126577	26	3.3	26	88	0	116	42	20	11	25	1.86
47126493--47126588	26	3.7	26	79	8	79	41	18	13	26	1.88
47130103--47130129	5	5.4	5	100	0	54	81	0	0	18	0.69
47135605--47135649	17	2.6	17	92	0	72	20	0	6	73	1.05
47139869--47139905	2	18.5	2	88	0	56	43	0	2	54	1.14
47143190--47143232	14	3.0	14	86	3	50	58	4	2	34	1.32
47143458--47143499	4	10.8	4	84	5	59	71	0	4	23	1.05
47145129--47145212	42	2.0	42	81	4	98	16	28	27	27	1.97
47145723--47145836	57	2.0	56	94	1	201	34	16	26	22	1.95
47146521--47146572	21	2.4	21	84	12	70	78	7	9	3	1.06
47147529--47149308	50	35.6	50	67	3	885	21	25	24	29	1.99
47147533--47149316	100	17.9	100	92	0	2728	21	25	24	29	1.99
47150608--47150654	15	3.1	15	76	11	51	12	19	0	68	1.21
47154819--47154918	49	2.0	50	90	1	157	48	15	14	23	1.80
47154877--47155012	69	2.0	68	94	1	236	46	18	13	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47155678--47155729	21	2.4	21	84	12	70	78	7	9	3	1.06
47159118--47159248	50	2.6	52	78	7	144	28	22	25	22	1.99
47165995--47166071	28	2.8	27	79	11	77	31	1	3	63	1.20
47166065--47166116	20	2.7	20	72	3	52	44	0	1	53	1.11
47166233--47166272	20	2.0	21	85	5	55	35	0	5	60	1.19
47172480--47172521	22	1.9	22	95	0	75	28	4	14	52	1.62
47178402--47178431	2	15.0	2	100	0	60	50	0	0	50	1.00
47178560--47178661	41	2.5	41	91	0	168	30	26	21	21	1.98
47195531--47195623	17	5.4	18	70	13	61	50	11	12	24	1.74
47195738--47195780	21	2.0	20	86	8	59	41	9	11	37	1.74
47196638--47196696	20	3.0	20	81	13	70	0	35	0	64	0.94
47196931--47197054	29	4.2	29	76	9	117	42	1	16	38	1.58
47196931--47197054	59	2.1	59	85	8	164	42	1	16	38	1.58
47201237--47201264	7	4.0	7	100	0	56	28	0	0	71	0.86
47201830--47201863	15	2.3	15	85	5	52	70	0	2	26	1.01
47203883--47203946	19	3.3	18	75	20	58	57	1	3	37	1.24
47203881--47203946	20	3.3	20	79	12	64	57	1	3	37	1.23
47204059--47204131	19	3.8	18	76	18	67	64	1	2	31	1.16
47204059--47204134	20	3.9	20	75	11	77	63	1	2	32	1.17
47204059--47204134	11	7.7	10	71	16	61	63	1	2	32	1.17
47204158--47204209	19	2.7	20	85	8	72	40	0	0	59	0.97
47204444--47204485	19	2.2	19	87	8	59	33	2	0	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47205266--47205329	29	2.2	30	83	8	87	21	1	14	62	1.40
47212514--47212570	20	3.0	18	78	12	51	54	1	3	40	1.28
47213100--47213148	20	2.3	21	79	10	55	40	2	2	55	1.23
47213144--47213192	9	5.1	9	81	13	62	87	0	0	12	0.54
47213157--47213194	7	5.6	7	96	3	69	89	0	0	10	0.49
47213146--47213194	1	49.0	1	79	0	53	89	0	0	10	0.48
47215790--47215857	26	2.6	26	85	0	82	16	16	35	32	1.91
47217019--47217104	29	3.0	29	71	6	75	20	34	23	20	1.96
47219948--47219992	3	15.0	3	100	0	90	66	0	0	33	0.92
47220054--47220138	42	2.0	42	97	0	161	50	16	22	10	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205