genome.fa.s19.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  200  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59332036--59332066	15	2.1	15	93	0	53	12	58	29	0	1.35
59332071--59332202	11	12.9	11	68	23	60	59	0	2	37	1.15
59332071--59332132	32	1.9	32	90	6	99	61	0	1	37	1.06
59332071--59332253	41	4.5	40	89	6	262	60	0	2	36	1.15
59332071--59332253	79	2.2	82	91	5	300	60	0	2	36	1.15
59332186--59332219	17	2.0	17	88	0	50	64	0	0	35	0.94
59332183--59332254	19	3.6	19	76	10	81	61	0	2	36	1.11
59332071--59332254	39	4.5	41	87	8	252	60	0	2	35	1.15
59333635--59333693	23	2.5	25	78	13	70	35	5	3	55	1.38
59333657--59333781	24	5.3	24	76	13	100	40	8	1	50	1.41
59333658--59333762	23	4.5	23	74	10	81	40	8	1	49	1.44
59333766--59333846	24	3.2	24	71	21	76	40	1	6	51	1.35
59343714--59343812	44	2.2	44	84	7	130	32	22	17	28	1.96
59343700--59343812	44	2.6	44	80	5	113	32	22	16	28	1.96
59348068--59348310	114	2.1	114	87	0	342	32	18	23	25	1.97
59348124--59348511	188	2.1	189	92	1	645	31	18	23	25	1.97
59348313--59348725	114	3.6	114	80	4	489	31	18	23	27	1.97
59348303--59348743	227	1.9	227	93	0	767	31	18	23	26	1.97
59348672--59348817	74	2.0	73	82	6	179	30	17	23	28	1.97
59348530--59348931	188	2.1	188	88	0	590	31	17	23	28	1.97
59348125--59349060	415	2.3	415	91	1	1500	31	18	23	27	1.97
59348712--59349061	114	3.1	112	78	5	382	30	18	22	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59349078--59349145	17	3.7	18	78	19	70	35	0	7	57	1.27
59349087--59349138	21	2.5	21	79	14	72	32	0	7	59	1.26
59349072--59349177	38	2.7	39	76	16	119	37	0	8	53	1.31
59349825--59349855	8	3.9	8	100	0	62	87	0	0	12	0.55
59355733--59357714	991	2.0	991	99	0	3937	42	16	17	23	1.88
59366515--59366558	21	2.1	21	100	0	88	25	27	13	34	1.93
59369575--59369627	26	2.0	26	85	0	70	26	7	28	37	1.83
59370244--59370292	20	2.4	21	82	3	64	24	4	10	61	1.45
59386889--59386915	12	2.2	12	100	0	54	18	18	40	22	1.91
59387219--59387265	21	2.2	22	92	3	78	21	19	38	21	1.94
59395966--59395997	16	2.0	16	93	0	55	46	6	0	46	1.27
59399955--59400031	9	8.4	9	69	13	50	67	3	1	27	1.16
59400315--59400489	9	18.4	9	69	19	74	32	1	3	63	1.18
59400305--59400342	20	1.9	20	89	10	60	26	2	5	65	1.27
59400305--59400358	20	2.7	20	83	11	58	27	1	3	66	1.19
59400314--59400372	30	1.9	31	86	10	86	32	1	3	62	1.21
59400326--59400459	19	6.9	19	67	19	55	35	1	2	60	1.21
59400374--59400426	28	1.9	27	88	3	79	35	1	1	60	1.19
59400413--59400477	29	2.2	29	78	5	69	30	0	4	64	1.14
59400384--59400485	47	2.2	46	79	13	111	33	0	3	62	1.13
59400914--59400960	21	2.2	21	100	0	94	19	4	8	68	1.33
59403422--59403517	43	2.2	43	94	0	174	17	31	31	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59406050--59406252	57	3.7	55	73	11	159	26	27	12	33	1.92
59406010--59406289	108	2.6	108	83	4	336	26	28	12	33	1.92
59408181--59408236	25	2.2	26	84	12	73	12	26	21	39	1.89
59408188--59408247	26	2.3	26	86	8	79	11	28	23	36	1.90
59414668--59414708	19	2.2	18	86	4	55	48	4	2	43	1.37
59415193--59415237	18	2.4	18	85	3	63	71	6	0	22	1.09
59415293--59415344	21	2.6	21	81	6	63	69	5	3	21	1.26
59415378--59415419	19	2.2	20	86	4	59	28	2	7	61	1.35
59415413--59415452	16	2.5	17	88	8	57	27	7	5	60	1.45
59415468--59415518	20	2.7	19	77	19	61	27	1	7	62	1.33
59418272--59419264	494	2.0	496	98	0	1945	22	15	11	50	1.76
59424028--59424063	8	4.9	8	86	13	51	72	0	13	13	1.13
59424031--59424072	7	6.0	7	83	16	52	71	0	14	14	1.15
59424031--59424072	21	2.0	21	90	0	66	71	0	14	14	1.15
59425290--59426054	132	5.8	132	89	1	1104	29	18	23	28	1.98
59425541--59425722	44	4.1	44	64	10	102	29	19	22	29	1.98
59425245--59426051	265	3.0	265	88	2	1210	28	18	23	28	1.98
59427676--59427743	17	3.9	18	77	11	70	23	2	0	73	0.97
59427693--59427743	6	8.0	6	79	12	57	19	1	0	78	0.85
59434839--59434883	17	2.6	17	82	3	54	44	2	2	51	1.26
59452728--59452795	28	2.3	30	85	12	88	39	1	4	54	1.30
59452931--59452957	13	2.1	13	100	0	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59453640--59453723	23	3.8	23	85	4	111	16	19	22	41	1.90
59456251--59456346	23	4.2	23	89	0	147	29	27	20	22	1.99
59456251--59456346	46	2.1	46	94	0	165	29	27	20	22	1.99
59462919--59462958	21	1.9	21	100	0	80	25	25	10	40	1.86
59471785--59471865	38	2.1	38	84	8	103	38	2	0	59	1.11
59472524--59472803	140	2.0	138	84	4	357	28	18	20	32	1.96
59477002--59477052	19	2.6	19	76	14	59	45	1	0	52	1.12
59482308--59482344	12	3.0	13	84	11	51	29	40	18	10	1.85
59491705--59491907	46	4.3	48	88	7	265	35	14	21	28	1.92
59491639--59491907	98	2.7	98	93	0	457	34	14	22	28	1.93
59491871--59492016	37	4.0	37	93	1	242	36	16	21	24	1.94
59493826--59493882	25	2.3	25	87	0	78	36	15	22	24	1.94
59493867--59493914	25	2.0	24	91	4	78	37	18	25	18	1.94
59493869--59493944	24	3.1	24	84	5	82	38	17	25	19	1.93
59498567--59498607	3	13.7	3	85	10	57	39	0	0	60	0.96
59498573--59498607	13	2.8	13	91	4	54	40	0	0	60	0.97
59499665--59499751	23	3.8	23	87	6	106	19	21	20	37	1.94
59499660--59499791	46	3.0	44	81	8	144	18	21	22	37	1.95
59499670--59499791	23	5.6	20	81	10	91	18	20	23	37	1.94
59499695--59499791	21	4.5	22	81	12	103	15	20	25	38	1.92
59499693--59499791	44	2.3	41	83	10	117	16	20	25	38	1.92
59501696--59501778	44	1.9	44	85	7	116	32	28	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59501675--59501804	43	3.0	43	79	8	122	30	25	17	26	1.97
59505968--59505995	8	3.5	8	100	0	56	50	0	0	50	1.00
59509079--59509155	22	3.4	22	67	13	66	22	16	19	41	1.90
59509053--59509161	46	2.4	46	92	0	173	23	15	15	44	1.85
59513432--59513489	30	2.0	28	86	6	80	3	24	5	67	1.27
59517607--59517649	6	7.2	6	89	0	50	48	0	6	44	1.29
59517604--59517640	18	2.1	18	89	0	56	43	0	5	51	1.24
59517607--59517649	12	3.6	12	83	0	59	48	0	6	44	1.29
59523808--59523854	23	2.0	23	83	0	58	76	0	17	6	0.98
59524304--59524351	11	4.6	10	76	5	51	22	4	2	70	1.15
59524374--59524411	19	2.1	19	90	5	60	36	0	7	55	1.29
59524374--59524433	20	3.0	20	79	11	54	35	0	11	53	1.38
59524380--59524428	19	2.5	20	83	9	57	34	0	12	53	1.39
59529464--59529581	58	2.0	58	100	0	236	33	10	15	41	1.80
59533173--59533215	16	2.7	17	82	13	56	4	16	9	69	1.31
59537578--59537604	12	2.2	12	100	0	54	25	0	40	33	1.56
59544750--59544805	25	2.2	24	81	9	67	67	3	3	25	1.22
59545530--59545599	30	2.4	30	85	7	99	34	2	2	60	1.26
59551371--59551423	16	3.3	16	89	0	79	41	3	32	22	1.72
59551605--59551691	19	4.6	20	72	20	53	58	0	0	41	0.98
59551615--59551647	11	3.0	11	91	8	50	57	0	0	42	0.98
59551592--59551704	21	5.1	21	69	21	79	54	0	0	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59551638--59551728	29	3.2	28	69	16	71	51	3	0	45	1.17
59551605--59551733	56	2.3	57	81	9	156	53	3	0	43	1.16
59557715--59557741	2	13.5	2	100	0	54	51	0	48	0	1.00
59562290--59562315	3	8.7	3	100	0	52	30	0	34	34	1.58
59564934--59564999	15	4.5	14	69	10	51	57	1	3	37	1.23
59564937--59565023	15	5.7	15	65	10	50	62	1	4	32	1.23
59571663--59571688	13	2.0	13	100	0	52	15	7	0	76	0.99
59573877--59573923	10	5.0	10	80	15	64	31	0	0	68	0.90
59573845--59573957	41	2.7	42	80	12	135	37	2	0	59	1.18
59573906--59573970	30	2.1	31	82	2	78	36	3	0	60	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205