genome.fa.s19.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  186  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55214865--55215007	42	3.4	42	84	1	171	18	37	22	20	1.94
55214865--55215021	84	1.9	84	82	0	197	17	36	23	21	1.94
55220498--55220611	47	2.4	47	89	0	174	35	20	22	21	1.96
55223392--55223426	16	2.1	17	89	5	54	48	0	0	51	1.00
55224075--55224162	21	4.1	21	65	19	56	40	5	1	52	1.33
55224090--55224181	40	2.2	42	79	9	100	42	7	2	47	1.44
55224404--55224429	7	3.7	7	100	0	52	53	0	0	46	1.00
55231211--55231243	16	2.1	16	94	0	57	36	21	21	21	1.95
55231926--55231957	16	2.0	16	100	0	64	62	31	6	0	1.20
55234087--55234123	16	2.3	16	100	0	74	32	18	10	37	1.86
55234613--55234652	18	2.2	18	95	0	71	45	7	5	42	1.54
55239971--55240775	408	2.0	408	98	0	1547	30	20	16	33	1.94
55247780--55247832	24	2.2	24	82	0	61	33	5	9	50	1.58
55252116--55252145	4	7.5	4	100	0	60	23	0	26	50	1.50
55252884--55252931	21	2.3	21	81	0	60	41	2	4	52	1.32
55255931--55255980	19	2.8	17	80	14	55	70	6	4	20	1.25
55265091--55265137	21	2.2	22	85	11	62	25	0	0	74	0.82
55273256--55273433	57	3.1	56	76	4	160	28	15	17	37	1.91
55273248--55273424	28	6.2	28	75	5	124	29	14	18	36	1.91
55273370--55273438	29	2.4	29	82	0	93	24	14	18	42	1.88
55286731--55286810	20	4.0	20	82	8	108	38	12	31	17	1.87
55288446--55288538	25	3.7	25	70	16	75	29	22	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55294912--55295003	25	3.7	25	68	16	64	29	20	21	28	1.98
55296312--55296350	20	2.0	20	94	0	69	30	17	35	15	1.91
55300423--55300510	42	2.1	42	82	0	104	23	11	15	48	1.78
55314870--55314909	11	3.4	12	83	16	57	20	5	2	72	1.15
55314873--55314901	10	2.7	11	94	5	51	13	3	0	82	0.79
55315660--55316199	44	11.6	44	68	15	250	31	19	21	27	1.97
55315705--55316199	142	3.5	142	92	1	807	31	19	21	27	1.97
55315875--55316056	98	1.9	98	80	6	217	31	19	21	28	1.97
55319146--55319184	11	3.5	11	82	6	51	17	5	5	71	1.23
55319148--55319178	12	2.6	12	94	0	53	9	6	3	80	0.99
55319801--55319872	33	2.1	34	89	2	110	40	6	12	40	1.70
55322231--55322282	27	1.9	27	84	0	68	34	5	9	50	1.59
55325733--55325768	17	2.1	18	89	5	56	63	5	22	8	1.43
55328164--55328224	32	1.9	32	89	0	95	14	26	22	36	1.93
55329606--55329671	23	2.9	23	77	8	80	30	4	27	37	1.77
55333808--55333863	19	2.8	20	83	8	69	8	12	1	76	1.08
55335317--55335461	72	2.0	72	94	0	254	15	28	19	37	1.92
55336448--55336513	23	2.9	23	77	8	80	28	6	27	37	1.80
55341153--55341196	22	2.0	22	95	0	79	34	4	36	25	1.76
55343415--55343463	10	4.9	10	78	9	55	26	30	16	26	1.97
55343415--55343461	20	2.3	20	89	7	69	25	31	17	25	1.97
55348985--55349009	12	2.1	12	100	0	50	44	8	16	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55354107--55354215	54	2.0	54	98	0	209	30	27	10	32	1.89
55357000--55357049	18	2.5	20	87	9	68	72	4	20	4	1.18
55358261--55358332	33	2.1	34	89	2	110	40	6	12	40	1.70
55360354--55360492	68	2.0	68	98	0	269	39	17	9	33	1.82
55367338--55367384	13	3.8	13	86	11	71	14	4	2	78	0.99
55367341--55367384	12	3.7	12	90	0	70	11	4	2	81	0.92
55367341--55367391	24	2.1	24	88	0	75	13	5	3	76	1.11
55367342--55367391	11	4.2	12	80	12	59	14	6	4	76	1.13
55369800--55369829	11	2.7	11	89	0	51	80	6	0	13	0.91
55369838--55369872	13	2.7	13	90	0	52	82	2	5	8	0.91
55369850--55369924	28	2.6	28	80	10	89	69	8	13	9	1.36
55369851--55369924	29	2.6	29	77	8	80	70	6	13	9	1.33
55373933--55373979	12	4.2	11	84	10	60	80	2	10	6	0.96
55373918--55373979	23	2.7	23	80	14	65	75	3	14	6	1.12
55373933--55373959	10	2.7	10	100	0	54	85	0	7	7	0.75
55378110--55378143	7	4.9	7	86	13	52	88	11	0	0	0.52
55378111--55378143	15	2.3	14	94	5	57	90	9	0	0	0.44
55381584--55381638	20	2.8	20	88	0	83	25	29	16	29	1.97
55390800--55390852	23	2.4	22	76	20	56	11	18	0	69	1.17
55390796--55390899	18	5.8	17	67	17	52	9	23	0	66	1.27
55398110--55398172	33	1.9	33	87	6	92	14	26	4	53	1.60
55398175--55398254	14	5.6	15	74	24	59	11	17	0	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55398169--55398255	27	3.1	27	79	9	97	12	18	0	68	1.20
55398151--55398344	12	16.7	12	65	21	58	11	19	2	66	1.33
55398187--55398312	17	7.0	17	69	17	60	10	19	1	69	1.26
55398270--55398334	23	3.0	22	82	13	64	7	13	3	75	1.14
55398270--55398319	17	2.8	17	77	22	50	6	14	4	76	1.13
55398187--55398322	6	22.7	6	65	7	53	9	18	2	69	1.26
55398187--55398353	86	1.9	85	79	7	185	10	20	1	67	1.29
55400015--55400067	14	3.8	14	79	0	70	73	3	1	20	1.08
55400003--55400064	13	4.6	13	80	7	70	74	6	3	16	1.16
55400109--55400144	16	2.3	16	95	4	65	63	5	11	19	1.46
55402911--55403697	58	13.6	58	99	0	1565	32	8	13	44	1.74
55408778--55408816	14	2.8	14	84	11	53	5	20	0	74	1.01
55408780--55408819	13	2.9	14	85	11	55	7	20	0	72	1.08
55408813--55408865	19	2.7	20	85	5	63	9	13	1	75	1.12
55411280--55411345	23	2.9	23	71	8	62	30	4	25	39	1.76
55413258--55413350	19	5.1	19	70	17	70	30	11	13	44	1.80
55413239--55413392	54	2.9	54	92	0	263	32	12	14	40	1.83
55413565--55413750	91	2.1	90	92	1	309	39	8	20	31	1.83
55414504--55414576	30	2.4	30	97	0	137	38	15	12	34	1.84
55414524--55414588	30	2.2	30	83	5	78	35	16	12	35	1.87
55428018--55428072	20	2.8	20	88	0	83	29	16	29	25	1.97
55435751--55435806	11	5.0	11	73	18	53	75	0	17	7	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55435747--55435818	21	3.3	22	76	7	58	70	1	22	5	1.15
55438422--55438497	38	2.0	38	92	0	125	22	21	34	22	1.97
55443652--55444122	27	17.6	27	82	1	545	35	17	20	25	1.95
55443652--55444127	107	4.4	108	85	2	577	35	18	20	26	1.95
55444162--55444221	24	2.5	24	89	5	95	20	8	25	46	1.78
55444336--55444395	26	2.3	26	88	0	93	18	25	23	33	1.97
55444392--55444530	32	4.4	32	84	0	163	20	19	20	39	1.93
55444722--55444775	28	1.9	28	88	0	81	16	25	25	31	1.97
55450451--55450697	126	2.0	126	94	0	431	24	8	22	44	1.81
55450894--55450967	35	2.1	35	97	0	139	35	10	13	40	1.80
55450948--55450986	19	2.1	19	95	0	69	28	10	10	51	1.68
55455571--55455605	18	1.9	18	94	0	61	25	20	31	22	1.98
55468594--55468618	13	1.9	13	100	0	50	16	32	16	36	1.90
55470683--55470745	27	2.3	27	75	0	63	23	23	15	36	1.94
55473550--55473602	23	2.4	22	75	9	54	9	18	1	69	1.25
55473595--55473634	18	2.2	18	86	0	53	10	25	0	65	1.24
55477756--55477810	15	3.8	14	80	7	65	74	1	21	1	1.01
55496020--55496090	37	1.9	37	86	11	101	76	2	18	2	1.04
55496030--55496079	6	8.2	6	83	14	50	76	2	20	2	0.99
55498339--55498435	30	3.2	30	75	2	106	28	26	15	28	1.96
55503338--55503403	31	2.1	32	88	2	98	45	13	10	30	1.77
55522467--55522503	17	2.2	17	95	0	65	24	18	2	54	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55527908--55527940	16	2.1	16	88	11	50	75	3	15	6	1.11
55529639--55529682	22	1.9	24	81	9	56	29	13	13	43	1.83
55529728--55529771	22	1.9	24	81	9	56	29	13	13	43	1.83
55529616--55529810	89	2.2	89	100	0	390	30	18	17	33	1.94
55531201--55531272	33	2.1	34	92	2	119	38	6	13	40	1.72
55531863--55532057	89	2.2	89	100	0	390	34	17	16	31	1.93
55534424--55534472	23	2.1	24	85	11	66	30	6	4	59	1.41
55535678--55535727	16	3.2	16	70	18	52	52	0	0	48	1.00
55538809--55538993	50	3.7	50	87	0	253	22	30	21	25	1.99
55540853--55540893	20	2.0	20	85	0	55	29	7	2	60	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205