genome.fa.s19.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  136  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41270390--41270836	44	10.1	43	70	12	210	31	21	15	31	1.95
41270400--41270836	89	4.9	88	74	9	293	31	21	15	31	1.95
41270400--41270872	133	3.5	131	74	14	376	30	22	15	31	1.95
41282017--41282086	23	2.9	23	74	17	70	61	1	4	32	1.24
41282456--41282526	32	2.2	31	90	7	115	45	7	9	38	1.65
41293585--41293609	8	3.1	8	100	0	50	24	0	0	76	0.80
41300454--41300595	44	3.2	44	85	2	187	28	15	25	30	1.96
41300454--41300614	44	3.7	44	81	6	159	26	15	26	31	1.96
41303392--41303452	33	1.9	31	90	6	95	34	0	22	42	1.54
41304233--41304659	212	2.0	212	96	0	793	34	20	16	28	1.95
41305079--41305115	14	2.8	14	88	8	51	10	0	40	48	1.38
41305259--41305420	51	3.3	51	66	15	144	41	3	17	37	1.68
41305237--41305557	94	3.4	92	83	9	364	40	3	18	37	1.69
41305594--41306131	126	4.3	126	96	0	959	32	19	21	26	1.97
41308688--41308791	11	10.0	10	71	19	63	47	1	27	23	1.62
41308688--41308791	22	4.5	22	70	19	77	47	1	27	23	1.62
41308676--41308777	51	2.0	51	96	0	186	45	1	27	25	1.64
41309192--41309240	9	5.6	9	88	7	57	28	0	4	67	1.09
41309192--41309234	9	4.8	9	88	8	61	27	0	4	67	1.10
41309191--41309240	18	2.8	18	82	11	68	28	0	4	68	1.08
41309576--41309824	116	2.1	116	100	0	498	42	20	9	27	1.82
41324428--41324618	95	2.0	95	100	0	382	42	5	19	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41324648--41324774	62	2.0	62	98	0	245	29	12	16	41	1.85
41334042--41334115	36	2.0	37	94	2	132	29	25	8	36	1.85
41351607--41351857	101	2.5	97	81	9	281	44	11	8	35	1.71
41365597--41365641	21	2.1	22	84	12	58	51	0	6	42	1.28
41365763--41365815	9	5.8	9	81	14	56	30	0	3	66	1.10
41365763--41365814	20	2.8	20	82	8	65	30	0	3	65	1.10
41366346--41366409	31	2.1	31	96	0	119	43	6	10	39	1.65
41369850--41369896	23	2.0	23	91	0	76	57	0	0	42	0.98
41373975--41374051	22	3.4	22	67	19	68	35	2	25	36	1.70
41373970--41374065	46	2.1	46	100	0	192	34	2	22	40	1.66
41378546--41378622	22	3.4	22	70	19	77	35	3	27	33	1.75
41378544--41378633	46	2.0	45	97	2	171	35	3	25	35	1.73
41386431--41386490	15	4.3	13	87	10	50	58	1	3	36	1.25
41386453--41386495	3	14.3	3	100	0	86	67	0	0	32	0.91
41388275--41388518	44	5.6	44	66	6	127	26	21	19	32	1.97
41388191--41388502	132	2.4	132	87	0	435	27	22	18	31	1.97
41388191--41388589	132	3.0	130	80	4	388	27	22	19	31	1.98
41389872--41389906	10	3.4	10	84	7	52	8	0	5	85	0.73
41389894--41389986	47	2.0	48	89	2	143	15	18	18	48	1.81
41398751--41398855	39	2.6	39	86	5	122	24	22	27	24	2.00
41398711--41398874	40	4.1	40	80	12	169	25	23	27	24	2.00
41398711--41398861	79	1.9	80	82	6	191	25	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41406377--41406561	79	2.3	81	84	7	236	24	22	27	25	2.00
41406378--41406561	40	4.6	40	83	9	216	24	22	27	25	2.00
41406430--41406594	79	2.1	79	84	6	210	26	21	27	25	1.99
41412133--41412202	18	3.9	18	87	7	90	64	1	1	32	1.11
41412154--41412202	3	16.3	3	91	8	82	67	0	0	32	0.91
41413195--41413262	16	4.2	16	96	0	118	27	0	36	35	1.58
41413243--41413337	45	2.1	44	88	1	136	34	5	27	32	1.79
41413499--41413533	18	2.0	17	88	5	52	54	0	0	45	0.99
41413457--41413529	27	2.7	27	76	8	76	52	2	0	45	1.15
41413636--41413802	47	3.6	46	71	12	146	47	4	2	45	1.35
41413695--41413766	28	2.6	28	84	8	85	51	4	0	44	1.20
41413934--41413978	22	2.0	22	100	0	90	42	13	0	44	1.43
41429683--41430004	156	2.1	157	95	1	574	35	8	19	36	1.83
41430760--41430950	55	3.5	53	82	8	168	32	16	20	29	1.95
41430827--41430917	29	3.2	29	73	14	100	34	17	17	30	1.93
41433906--41433956	25	2.0	26	84	3	68	45	9	3	41	1.56
41434062--41434119	17	3.6	17	77	11	68	56	1	1	39	1.19
41440086--41440131	21	2.1	21	84	8	56	56	0	6	36	1.25
41440077--41440137	32	1.9	32	86	6	88	59	0	4	36	1.19
41445213--41445237	5	5.0	5	100	0	50	80	0	0	20	0.72
41446018--41446740	44	16.7	44	69	14	364	24	20	22	32	1.98
41446001--41446652	129	5.1	130	87	1	884	25	19	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41446106--41446476	85	4.3	85	70	11	270	25	19	22	32	1.97
41446001--41446737	129	5.7	127	83	4	814	24	20	22	32	1.98
41446946--41447102	44	3.6	44	84	5	194	28	26	17	28	1.98
41454668--41454711	22	2.0	22	87	12	65	18	11	40	29	1.85
41469560--41469598	20	1.9	21	89	5	62	43	0	17	38	1.50
41473448--41473639	49	3.9	49	72	9	131	28	13	31	26	1.94
41474789--41474817	14	2.0	15	93	6	51	13	3	0	82	0.79
41475608--41475661	26	2.1	26	82	0	63	31	3	3	61	1.31
41481910--41482263	44	7.5	44	65	14	161	30	21	22	25	1.99
41481884--41483222	143	9.4	143	87	0	1802	30	20	21	27	1.98
41483187--41483301	44	2.6	44	81	8	135	31	23	17	27	1.97
41484059--41484117	30	1.9	31	86	3	84	47	3	20	28	1.66
41485905--41486695	143	5.5	143	86	1	1057	30	20	21	27	1.98
41486660--41486774	44	2.6	44	81	8	135	31	23	17	27	1.97
41487532--41487590	30	1.9	31	86	3	84	47	3	20	28	1.66
41490610--41490639	14	2.2	14	94	5	53	36	6	3	53	1.44
41492503--41492565	24	2.7	23	85	5	72	28	0	3	68	1.05
41498807--41498882	26	2.9	26	69	11	66	38	5	0	56	1.22
41500977--41501013	17	2.2	17	90	9	58	56	8	0	35	1.29
41501096--41501140	18	2.3	20	75	17	51	62	8	8	20	1.51
41501194--41501227	3	11.7	3	87	6	52	64	0	2	32	1.08
41502743--41503171	44	9.5	44	75	7	299	30	19	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41503946--41504009	28	2.3	27	86	2	92	64	0	0	35	0.94
41505788--41505840	23	2.3	23	86	3	79	30	7	3	58	1.43
41509849--41509910	30	2.1	30	100	0	124	30	12	3	53	1.55
41510619--41510662	8	5.8	8	89	5	65	90	9	0	0	0.44
41510618--41510662	11	4.2	11	94	2	74	91	8	0	0	0.43
41510618--41510662	19	2.4	18	92	7	72	91	8	0	0	0.43
41510618--41510662	18	2.5	17	89	10	63	91	8	0	0	0.43
41510628--41510693	22	3.0	21	82	8	62	81	4	7	6	0.97
41510617--41510684	9	7.6	9	73	18	52	85	5	2	5	0.83
41510618--41510662	1	45.0	1	81	0	54	91	8	0	0	0.43
41512280--41512387	44	2.5	42	83	7	139	27	22	21	28	1.99
41512578--41513119	132	4.1	132	91	1	820	28	18	23	29	1.98
41512644--41512966	44	7.4	44	63	13	119	29	18	23	28	1.98
41514521--41514568	22	2.1	23	88	3	71	29	8	4	58	1.46
41515741--41516140	199	2.0	199	97	0	755	38	12	10	39	1.77
41520949--41521039	40	2.3	40	92	3	148	24	19	27	28	1.99
41520949--41521076	40	3.2	40	85	3	134	25	20	27	27	1.99
41523421--41523704	141	2.0	141	94	1	498	33	21	13	30	1.92
41530491--41530558	27	2.6	25	82	8	91	23	26	14	35	1.94
41536489--41536763	41	6.7	41	94	0	469	27	21	28	22	1.99
41543552--41543903	41	8.6	41	94	0	598	28	20	27	23	1.99
41545070--41545123	17	3.2	16	75	19	56	25	3	11	59	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41548378--41548420	18	2.4	19	85	14	65	62	0	9	27	1.25
41548381--41548419	17	2.3	17	91	8	62	61	0	10	28	1.28
41554057--41554121	29	2.2	29	86	10	89	58	3	1	36	1.23
41552744--41554371	669	2.4	663	79	10	1714	37	10	10	41	1.75
41558384--41558489	53	2.0	53	84	0	140	35	14	13	36	1.85
41559554--41559606	18	2.8	19	75	16	56	13	9	3	73	1.21
41564323--41564412	30	3.0	30	98	1	171	45	6	21	26	1.76
41564783--41565299	258	2.0	258	100	0	1034	33	14	21	30	1.93
41569204--41569297	30	3.1	30	96	1	170	41	5	25	27	1.77
41569202--41569282	15	5.3	16	71	11	80	43	6	24	25	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205