genome.fa.s19.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  144  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43662030--43662093	27	2.4	27	84	2	76	51	3	4	40	1.38
43666504--43666598	26	3.7	25	81	2	100	38	24	20	16	1.92
43666802--43667125	27	12.0	27	89	2	402	22	17	19	39	1.92
43669115--43669151	5	7.4	5	93	0	65	62	2	0	35	1.10
43671387--43671431	6	7.7	6	87	5	56	26	0	0	73	0.84
43671384--43671431	17	2.8	17	87	3	60	27	0	0	72	0.84
43675020--43675053	17	2.0	17	88	11	52	23	0	5	70	1.09
43680396--43681317	474	1.9	474	83	3	1185	27	24	13	33	1.93
43682584--43682617	15	2.4	14	90	5	50	79	0	5	14	0.91
43690278--43690337	29	2.0	29	83	9	75	25	1	5	68	1.19
43690313--43690350	19	2.0	19	85	10	51	34	0	5	60	1.19
43690470--43690543	22	3.5	22	68	22	68	67	0	2	29	1.04
43694184--43694334	10	15.4	10	71	18	88	67	0	31	0	0.96
43694196--43694328	28	4.8	28	76	12	121	69	0	30	0	0.94
43694190--43694292	38	2.7	38	85	7	145	67	0	32	0	0.90
43694242--43694333	6	14.0	6	74	15	58	71	0	27	1	0.93
43694867--43694896	16	1.9	15	93	6	51	70	0	3	26	1.03
43694659--43695457	317	2.5	317	92	1	1323	51	7	10	30	1.65
43700703--43700837	40	3.2	40	78	13	139	51	12	3	32	1.57
43708307--43708809	252	2.0	251	99	0	979	30	26	19	22	1.98
43709130--43709159	12	2.5	12	94	0	51	6	0	40	53	1.27
43709937--43710151	111	1.9	115	89	6	341	41	13	15	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43713525--43713571	20	2.3	21	85	3	60	25	6	6	61	1.44
43713566--43713599	16	2.1	16	89	10	52	5	5	0	88	0.64
43715875--43716011	67	2.0	68	98	1	267	32	5	1	59	1.30
43715979--43716026	17	2.7	18	74	6	53	50	0	2	47	1.12
43715881--43716031	67	2.2	67	91	3	223	34	4	1	58	1.30
43716304--43716339	17	2.2	17	95	5	65	75	5	0	19	1.00
43717173--43717342	91	1.9	92	81	3	209	32	26	17	23	1.97
43717129--43717558	205	2.0	212	84	7	554	31	23	19	25	1.98
43718097--43718927	46	18.1	46	99	0	1653	41	21	2	34	1.66
43723408--43723732	46	7.1	46	99	0	641	39	23	2	34	1.67
43723820--43723862	22	2.0	21	86	4	59	18	2	27	51	1.59
43724130--43724159	15	2.0	15	93	0	51	63	0	3	33	1.11
43724367--43724404	20	1.9	20	94	0	67	34	0	7	57	1.28
43724916--43724960	19	2.4	19	84	0	63	33	42	2	22	1.66
43725309--43725333	12	2.1	12	100	0	50	40	0	8	52	1.31
43726889--43727167	43	6.5	43	91	0	396	27	17	29	25	1.97
43729033--43729170	51	2.7	51	88	1	197	28	27	18	26	1.98
43740325--43740358	17	2.0	17	88	0	50	41	0	14	44	1.45
43741653--43741736	43	2.0	43	87	0	123	32	16	13	38	1.87
43751152--43751247	34	2.7	35	77	9	97	40	19	8	31	1.81
43752120--43752553	78	5.6	78	96	1	773	43	13	3	39	1.61
43755009--43755062	21	2.5	20	82	14	56	62	3	0	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43759730--43759766	19	1.9	19	100	0	74	54	0	24	21	1.45
43761654--43761729	40	1.9	40	86	0	107	27	13	22	36	1.91
43771160--43771266	51	2.1	51	92	0	178	37	17	4	40	1.71
43771481--43771591	40	2.8	40	82	4	127	41	21	17	19	1.90
43771663--43771779	41	2.9	41	87	2	164	19	23	23	33	1.97
43772869--43772924	7	8.1	7	80	4	51	17	1	41	39	1.60
43777558--43777604	21	2.2	21	100	0	94	12	12	14	59	1.61
43777602--43777692	43	2.1	43	97	0	173	18	16	34	30	1.93
43786014--43786059	16	2.8	16	84	15	67	71	0	2	26	0.97
43786261--43786627	42	8.8	42	84	7	430	32	19	22	25	1.97
43786261--43786627	83	4.4	83	86	6	453	32	19	22	25	1.97
43786266--43786627	125	2.9	124	87	4	462	31	19	22	25	1.98
43786949--43787000	21	2.5	22	90	9	90	3	30	17	48	1.65
43792563--43792745	9	21.1	9	69	11	123	30	1	21	45	1.62
43792563--43792726	25	6.7	25	69	15	92	30	1	21	46	1.59
43792666--43792719	16	3.2	16	80	10	54	25	0	22	51	1.48
43792811--43792853	16	2.7	16	92	0	68	32	2	16	48	1.58
43792942--43793065	34	3.5	34	76	14	133	48	3	8	39	1.51
43792963--43793095	39	3.5	39	73	18	127	49	3	6	40	1.44
43792942--43793095	73	2.1	76	93	3	269	48	3	7	40	1.51
43792969--43793081	34	3.2	33	74	13	109	49	2	7	40	1.44
43792966--43793118	73	2.1	72	84	7	193	50	2	7	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43793219--43793357	67	2.1	67	95	2	253	45	13	4	36	1.64
43793417--43793452	16	2.2	16	95	0	63	52	8	11	27	1.65
43796046--43796121	21	3.6	21	79	8	75	44	39	0	15	1.47
43796070--43796134	7	9.3	7	83	6	87	43	43	0	13	1.44
43796065--43796139	14	5.4	14	79	6	71	45	41	0	13	1.43
43796065--43796143	21	3.7	21	83	6	88	44	43	0	12	1.42
43796914--43796952	20	1.9	19	90	10	60	51	0	0	48	1.00
43797058--43797093	18	2.0	18	89	10	56	69	5	0	25	1.10
43797062--43797102	18	2.2	19	86	4	57	70	4	0	24	1.06
43797203--43797719	228	2.3	228	89	3	756	29	24	17	29	1.97
43797203--43797629	114	3.8	114	97	0	793	28	23	18	30	1.97
43797686--43797955	114	2.4	113	80	7	278	29	23	18	28	1.98
43815167--43815199	5	6.4	5	96	3	57	18	3	0	78	0.87
43819815--43819869	27	2.0	27	92	0	92	38	20	21	20	1.94
43819997--43820116	27	4.5	27	77	4	127	25	12	23	39	1.89
43820009--43820113	53	2.0	54	84	1	140	25	14	20	39	1.91
43835020--43835153	39	3.4	39	77	10	116	39	21	19	19	1.93
43835193--43835469	41	6.8	40	83	5	304	20	22	24	32	1.98
43835193--43835469	123	2.3	123	84	5	355	20	22	24	32	1.98
43836366--43836408	14	3.0	15	83	16	56	25	0	34	39	1.56
43837473--43837591	7	15.9	7	72	13	67	20	2	45	31	1.64
43837495--43837591	23	4.3	23	80	6	108	20	3	44	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43837473--43837591	46	2.6	45	90	2	177	20	2	45	31	1.64
43837452--43837592	7	19.0	7	70	13	59	20	2	43	33	1.64
43840977--43841036	33	1.9	30	80	12	68	33	8	15	43	1.76
43841118--43841150	10	3.1	11	86	8	50	33	9	21	36	1.85
43841185--43841276	13	6.9	13	71	18	73	45	8	3	42	1.51
43841168--43841423	40	6.5	39	78	11	206	45	10	1	42	1.50
43841313--43841403	22	4.6	21	72	20	72	43	13	0	42	1.43
43841317--43841407	18	4.9	18	77	15	96	46	12	0	41	1.41
43841317--43841378	17	3.6	17	84	4	70	46	12	0	40	1.42
43841512--43841563	27	1.9	27	100	0	104	42	7	1	48	1.43
43841535--43841805	121	2.2	121	96	1	499	40	9	5	44	1.60
43841433--43841695	148	1.8	145	94	5	458	40	7	5	46	1.57
43841781--43841832	27	1.9	27	100	0	104	42	7	1	48	1.43
43841889--43842179	25	11.5	25	71	12	143	45	19	2	32	1.64
43841995--43842297	25	12.0	25	71	11	126	44	19	2	33	1.65
43842030--43842275	93	2.7	91	79	6	210	43	19	2	33	1.64
43842266--43842326	25	2.4	25	80	0	68	47	19	1	31	1.59
43841889--43842348	118	3.9	118	96	0	812	45	20	2	32	1.65
43847792--43847962	66	2.6	65	85	4	218	40	18	27	12	1.87
43847933--43848045	21	5.4	21	78	0	91	37	15	40	6	1.73
43848416--43848803	43	9.0	43	72	6	214	24	20	27	26	1.99
43848416--43848679	86	3.1	86	83	1	287	26	16	29	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43848922--43848965	22	2.0	22	95	0	79	43	27	20	9	1.82
43850446--43850497	15	3.5	15	76	10	61	13	13	44	28	1.82
43853594--43853762	29	5.8	29	84	0	221	21	28	11	37	1.89
43853583--43853762	87	2.1	87	89	0	270	22	27	12	37	1.91
43855579--43855808	43	5.3	43	86	0	280	33	32	15	18	1.92
43855581--43855811	86	2.7	86	85	0	309	33	32	15	18	1.92
43856009--43856067	18	3.3	18	63	13	50	40	10	6	42	1.65
43860133--43860164	16	2.0	16	100	0	64	31	18	18	31	1.95
43860420--43860465	21	2.2	21	84	7	58	23	2	50	23	1.61
43861011--43861081	33	2.2	33	86	0	97	33	43	5	16	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205