genome.fa.s19.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  114  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34237452--34237714	40	6.6	40	86	3	307	26	27	21	24	1.99
34239211--34239333	47	2.6	47	88	0	174	31	8	31	28	1.86
34244670--34244773	18	5.6	18	67	10	66	67	0	20	11	1.27
34244741--34244779	12	3.2	12	88	0	51	74	0	17	7	1.05
34244745--34244795	18	2.7	20	78	6	61	68	0	23	7	1.15
34251300--34251361	30	2.1	30	93	0	106	30	16	16	37	1.90
34252639--34252678	14	2.9	14	96	0	71	27	0	12	60	1.33
34255844--34255892	25	2.0	25	100	0	98	20	18	16	44	1.86
34263196--34263254	25	2.4	25	88	0	82	28	20	23	27	1.99
34263217--34263291	25	3.0	25	84	3	89	33	16	24	26	1.95
34265845--34265947	27	3.8	27	85	2	136	39	21	15	23	1.91
34274164--34274200	17	2.1	18	85	14	51	43	10	13	32	1.79
34284528--34284586	27	2.3	25	82	8	82	40	1	18	38	1.61
34284537--34284588	12	4.1	12	76	11	50	38	0	17	44	1.49
34289469--34289522	27	2.0	27	88	0	81	40	7	12	38	1.72
34311304--34311333	13	2.3	13	94	0	51	43	6	20	30	1.77
34311313--34311376	27	2.5	25	78	12	67	42	3	18	35	1.66
34314962--34315019	27	2.1	27	84	6	73	31	12	22	34	1.91
34314977--34315197	27	8.3	27	83	6	193	21	15	20	42	1.89
34314977--34315197	55	4.1	55	80	7	215	21	15	20	42	1.89
34314975--34315224	27	9.3	27	85	3	148	21	15	20	42	1.89
34330643--34330685	20	2.2	20	86	0	59	13	37	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34352284--34352327	20	2.2	20	88	8	63	18	4	0	77	0.94
34358040--34358117	38	2.1	38	92	0	129	15	19	14	51	1.77
34362399--34362438	14	3.0	13	82	7	53	60	0	0	40	0.97
34364132--34364281	28	5.4	28	82	7	173	31	23	24	21	1.98
34364132--34364281	55	2.7	56	80	8	198	31	23	24	21	1.98
34364647--34364869	27	8.2	26	82	6	248	18	16	21	43	1.87
34364646--34364869	54	4.1	53	86	4	313	19	16	20	43	1.88
34377904--34377945	12	3.5	12	75	12	50	23	42	0	33	1.55
34379983--34380022	18	2.2	18	86	0	53	47	7	27	17	1.74
34382072--34382112	21	1.9	22	85	5	57	68	0	4	26	1.10
34384113--34384290	27	6.6	27	83	3	205	26	15	28	29	1.96
34384114--34384269	82	1.9	81	88	3	233	26	15	28	29	1.96
34384110--34384290	82	2.2	81	83	2	229	27	15	27	29	1.96
34394523--34394582	30	2.0	31	83	3	77	41	0	38	20	1.52
34394796--34394832	9	4.1	9	92	0	65	29	10	13	45	1.77
34399110--34399224	27	4.3	27	78	4	115	42	16	14	26	1.87
34399215--34399280	27	2.5	27	77	2	80	33	15	27	24	1.95
34399401--34399466	27	2.4	27	87	5	89	18	21	24	36	1.95
34399448--34399501	26	2.1	26	82	0	63	18	14	24	42	1.88
34399602--34399665	22	2.9	22	71	0	56	18	23	15	42	1.89
34402705--34402747	12	3.2	13	83	12	52	69	4	2	23	1.18
34423340--34423615	41	6.8	41	87	0	329	37	20	19	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34423341--34423615	82	3.4	82	87	1	363	37	20	19	22	1.94
34426356--34426402	21	2.2	22	92	3	78	21	19	38	21	1.94
34430757--34430840	25	3.4	25	83	3	98	26	27	16	29	1.97
34430805--34430852	25	2.0	25	87	4	71	27	25	20	27	1.99
34440727--34440802	27	2.9	27	94	2	136	60	0	10	28	1.30
34440798--34441010	101	2.1	101	87	0	309	30	14	25	29	1.95
34442184--34442282	49	2.0	49	98	0	189	38	22	7	32	1.81
34445882--34445944	31	2.0	32	96	3	119	55	19	6	19	1.63
34450697--34450726	15	2.0	15	100	0	60	73	6	0	20	1.05
34452210--34452256	24	1.9	24	86	4	67	36	0	38	25	1.56
34452858--34453185	27	12.1	27	85	0	404	42	21	16	19	1.89
34453437--34453482	18	2.6	18	92	0	74	21	15	23	39	1.92
34455405--34455451	24	1.9	24	86	4	67	36	0	38	25	1.56
34455869--34455910	21	2.0	21	95	0	75	14	16	42	26	1.86
34456580--34456638	24	2.4	26	72	16	63	28	13	8	49	1.71
34463915--34463963	19	2.6	19	93	0	80	24	24	22	28	1.99
34465099--34465143	3	15.0	3	85	0	54	35	4	2	57	1.31
34489293--34489470	27	6.6	27	84	3	205	29	28	15	26	1.96
34489314--34489469	82	1.9	81	88	3	233	29	28	15	26	1.96
34499413--34499503	27	3.3	27	70	17	87	43	3	14	38	1.61
34499397--34499508	56	2.0	56	96	0	206	43	4	14	37	1.65
34519361--34519400	20	2.0	20	100	0	80	25	20	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34520411--34520480	28	2.6	28	77	8	74	45	17	18	18	1.85
34523944--34523993	21	2.5	19	75	12	55	30	4	2	64	1.23
34524928--34524986	2	29.5	2	92	0	100	50	45	0	3	1.18
34527341--34527477	73	1.9	73	86	3	195	29	13	24	32	1.94
34529666--34529729	18	3.6	17	74	15	51	6	14	1	78	1.02
34532159--34532212	18	2.8	18	83	11	63	31	22	20	25	1.98
34532438--34532533	34	2.8	35	81	9	110	40	16	13	29	1.87
34532789--34532883	27	3.6	27	79	10	99	60	5	13	21	1.53
34538540--34538626	44	2.0	44	90	0	138	49	3	9	37	1.52
34539789--34539815	8	3.4	8	100	0	54	37	0	0	62	0.95
34539991--34540049	31	1.9	31	86	6	84	44	6	10	38	1.65
34551281--34551315	18	1.9	18	88	0	52	37	14	45	2	1.59
34555786--34555810	13	1.9	13	100	0	50	48	16	0	36	1.46
34556334--34556762	215	2.0	215	95	0	777	30	24	15	29	1.96
34565717--34565759	10	4.1	10	80	11	50	30	0	11	58	1.34
34569584--34569715	40	3.3	40	86	2	176	26	28	21	23	1.99
34569700--34569777	40	1.9	41	82	10	97	26	28	21	23	1.99
34575397--34575518	23	5.3	23	85	2	174	22	20	26	30	1.98
34575397--34575518	46	2.7	46	90	2	192	22	20	26	30	1.98
34575655--34575862	104	2.0	104	99	0	407	46	8	19	25	1.78
34582892--34582941	8	6.6	8	79	6	52	2	22	0	76	0.89
34584014--34584066	20	2.5	22	77	20	60	15	13	0	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34589435--34589516	31	2.8	29	77	15	96	8	12	39	40	1.73
34589577--34589636	10	5.9	10	74	16	52	1	21	0	76	0.87
34589573--34589629	11	5.2	11	77	14	55	1	21	0	77	0.86
34589582--34589636	17	3.2	17	80	14	60	1	20	0	78	0.85
34589583--34589636	27	2.0	27	82	7	65	1	18	0	79	0.82
34589570--34589632	21	2.9	22	77	17	78	3	20	0	76	0.93
34589577--34589632	24	2.3	24	82	14	62	1	21	0	76	0.87
34590623--34590725	30	3.5	30	85	11	142	46	7	22	23	1.77
34591331--34591768	40	10.9	40	83	1	473	43	27	15	13	1.84
34597074--34597126	13	4.1	13	82	0	61	32	11	20	35	1.88
34599278--34599491	27	8.0	27	88	3	281	17	19	18	43	1.88
34608567--34608622	19	2.9	19	76	10	60	21	17	21	39	1.93
34608602--34608690	43	2.1	43	89	0	133	19	16	24	39	1.92
34624195--34624256	20	3.4	18	77	22	67	69	9	3	17	1.29
34626443--34626566	42	2.9	43	90	1	187	32	20	20	25	1.98
34626510--34626632	63	2.0	63	91	3	203	30	22	20	26	1.98
34626573--34626713	42	3.4	41	87	3	183	28	22	20	28	1.99
34626443--34626713	147	1.8	147	88	2	409	31	21	20	26	1.98
34626573--34626772	42	4.7	42	80	5	152	30	23	19	27	1.98
34627158--34627227	21	3.3	21	83	0	86	5	42	17	34	1.73
34627170--34627231	21	3.0	21	85	0	88	6	43	16	33	1.73
34629728--34630053	9	37.3	9	73	14	272	32	1	21	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34629725--34630073	25	13.4	25	74	14	174	32	1	21	44	1.62
34629733--34630062	88	3.8	88	84	6	377	31	1	21	45	1.61
34630183--34630226	23	1.9	23	95	0	79	38	0	18	43	1.50
34631272--34631309	18	2.1	18	100	0	76	47	15	10	26	1.78
34631974--34632683	365	1.9	365	93	0	1206	35	20	14	29	1.92
34632702--34632731	4	7.5	4	100	0	60	23	0	0	76	0.78
34632741--34632821	24	3.2	23	77	19	90	45	9	0	44	1.37
34632741--34632824	28	3.2	26	75	12	82	44	9	0	46	1.36
34633258--34633297	14	2.9	14	84	0	53	32	45	0	22	1.53
34633533--34633576	21	2.1	21	87	4	63	45	25	0	29	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205