genome.fa.s19.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  133  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40336411--40336459	18	2.6	19	83	3	73	51	24	0	24	1.49
40344726--40344826	52	1.9	52	95	0	184	25	17	22	33	1.96
40347289--40347799	102	5.0	102	99	0	1004	29	13	28	28	1.94
40350594--40350668	37	2.0	37	92	0	123	44	14	5	36	1.68
40350594--40350685	37	2.5	37	85	7	107	45	14	5	34	1.67
40350915--40350996	41	2.0	41	97	0	155	19	34	6	40	1.76
40353606--40353982	133	2.8	134	83	7	487	31	13	21	33	1.92
40354354--40354405	21	2.5	20	81	6	68	21	3	38	36	1.72
40354622--40354792	93	1.8	93	93	2	299	40	5	18	35	1.74
40354626--40354818	93	2.1	93	83	3	237	43	5	16	35	1.71
40355460--40355490	7	4.4	7	91	0	53	16	0	35	48	1.46
40355459--40355499	21	1.9	22	90	5	66	19	2	31	46	1.63
40357029--40358059	521	2.0	510	93	2	1767	21	11	19	48	1.79
40358943--40358989	21	2.2	21	85	7	60	34	19	40	6	1.77
40358625--40359945	658	2.0	658	99	0	2588	32	15	22	29	1.95
40360032--40360191	42	3.8	42	90	2	243	34	19	22	23	1.97
40360032--40360191	82	1.9	83	88	3	241	34	19	22	23	1.97
40360772--40360814	21	2.0	21	82	8	52	37	0	6	55	1.27
40360823--40360852	15	1.9	16	93	6	53	43	0	6	50	1.28
40360844--40360978	18	8.0	18	72	17	94	42	1	2	53	1.22
40361140--40361228	46	2.0	46	88	4	137	37	29	4	29	1.77
40361210--40361274	16	4.1	16	89	0	94	26	32	4	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40361298--40361406	39	2.8	39	91	1	184	19	2	26	51	1.60
40362454--40362491	16	2.3	17	90	4	60	26	2	7	63	1.35
40363797--40363838	17	2.4	17	96	4	75	16	0	42	40	1.48
40365116--40365171	27	2.1	27	100	0	112	37	16	7	39	1.76
40368427--40368628	90	2.3	87	84	4	262	36	20	9	33	1.85
40368704--40368799	21	4.7	19	77	10	93	64	2	3	30	1.20
40368748--40368834	9	9.3	9	70	15	52	60	1	3	34	1.21
40368703--40368834	10	13.4	10	70	14	78	62	1	3	32	1.19
40369097--40369175	10	8.4	10	71	20	55	35	1	0	63	1.03
40369037--40369159	9	13.6	9	70	11	72	34	1	1	61	1.15
40369037--40369126	37	2.4	36	76	8	92	35	2	2	60	1.22
40369103--40369157	17	3.2	17	79	5	56	34	0	0	65	0.93
40369056--40369159	44	2.3	47	80	8	117	35	1	0	61	1.14
40369183--40369355	90	1.9	90	81	8	210	35	8	20	35	1.83
40379152--40379214	19	3.3	19	68	0	54	41	11	3	44	1.56
40379249--40379283	17	2.0	17	88	5	52	48	0	17	34	1.47
40380597--40380686	27	3.3	27	87	6	128	14	32	22	31	1.94
40380687--40380716	15	1.9	16	93	6	53	6	6	20	66	1.38
40382682--40382715	16	2.1	17	94	5	61	79	0	0	20	0.73
40382709--40382753	19	2.3	20	92	3	74	60	0	0	40	0.97
40382683--40382879	9	21.0	9	68	20	59	63	1	4	30	1.22
40383058--40383210	19	8.2	19	72	17	90	32	0	1	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40383048--40383211	28	5.9	29	77	11	155	31	1	2	64	1.14
40383096--40383164	8	7.9	8	72	22	50	27	0	1	71	0.95
40383105--40383186	37	2.2	36	85	8	103	32	0	1	65	1.00
40383058--40383210	9	16.4	9	71	15	98	32	0	1	64	1.09
40383285--40383598	89	3.5	88	80	5	337	34	7	19	38	1.79
40384423--40384454	16	2.0	16	100	0	64	6	25	18	50	1.70
40386433--40386457	13	1.9	13	100	0	50	36	16	0	48	1.46
40387118--40387176	8	7.4	8	73	21	52	49	16	1	32	1.56
40387118--40387176	15	3.7	15	73	20	57	49	16	1	32	1.56
40387115--40387190	33	2.3	33	100	0	152	48	17	3	30	1.65
40387133--40387188	18	3.3	18	72	23	66	48	19	3	28	1.66
40387547--40387637	23	4.0	22	80	13	105	35	20	25	18	1.96
40387547--40387637	45	2.0	45	83	10	114	35	20	25	18	1.96
40391042--40391075	13	2.7	12	86	13	50	44	5	8	41	1.60
40396030--40396100	28	2.5	28	86	11	92	61	2	1	33	1.19
40396000--40396107	10	12.0	9	75	17	84	63	2	0	32	1.15
40396000--40396107	19	6.0	18	73	20	84	63	2	0	32	1.15
40396558--40396732	10	18.6	9	65	22	67	30	2	3	63	1.23
40396640--40396717	18	4.3	17	77	18	61	30	1	3	64	1.20
40396659--40396722	29	2.2	29	83	5	76	26	1	4	67	1.19
40396687--40396736	18	2.7	18	80	17	57	22	0	6	72	1.07
40396764--40396815	22	2.4	22	87	3	70	25	7	5	61	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40402571--40402626	27	2.1	27	86	0	76	46	7	5	41	1.54
40403730--40403782	27	2.0	27	88	7	81	50	3	13	32	1.59
40404321--40404365	7	6.1	7	80	10	54	17	46	0	35	1.49
40404321--40404366	8	6.1	8	80	12	53	17	47	0	34	1.48
40404321--40404366	22	2.0	23	91	4	76	17	47	0	34	1.48
40406850--40406895	18	2.5	18	92	3	74	63	19	6	10	1.48
40407061--40407124	23	2.7	23	80	11	67	56	0	4	39	1.20
40412560--40412672	56	2.0	56	84	0	145	22	9	18	49	1.76
40413529--40413641	56	2.0	56	84	0	145	22	9	18	49	1.76
40411801--40413743	969	2.0	969	99	0	3877	33	13	19	34	1.90
40413822--40413852	16	1.9	16	93	0	53	48	3	9	38	1.52
40413996--40414064	25	2.7	27	80	8	81	62	2	1	33	1.19
40423011--40423062	24	2.2	24	89	0	77	55	9	1	32	1.43
40424977--40425028	24	2.2	24	89	0	77	55	9	1	32	1.43
40432584--40432745	26	6.6	25	73	18	83	35	21	24	18	1.95
40432679--40432753	26	2.9	25	84	11	98	40	24	20	16	1.91
40437279--40437317	5	7.6	5	82	5	51	41	17	0	41	1.50
40439477--40439520	7	6.0	7	92	7	70	81	4	13	0	0.83
40441565--40441609	22	2.0	22	100	0	90	42	8	26	22	1.83
40450847--40450879	13	2.6	13	90	4	50	0	30	0	69	0.88
40451597--40451690	49	1.9	48	85	6	127	35	15	26	22	1.94
40452363--40452413	23	2.2	23	86	6	68	47	19	13	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40454330--40454387	25	2.3	25	85	5	73	41	24	18	15	1.89
40456268--40456310	12	3.5	12	81	12	52	69	2	4	23	1.18
40456268--40456311	21	2.1	21	87	8	63	70	2	4	22	1.17
40457776--40458566	143	5.5	142	87	3	1106	27	22	20	29	1.99
40460294--40460386	45	2.1	45	93	0	159	31	23	19	25	1.98
40460383--40460578	51	3.9	50	79	4	223	30	29	17	23	1.97
40460390--40460574	101	1.8	101	90	3	300	30	28	17	23	1.97
40462793--40462833	20	2.0	22	90	9	68	7	0	7	85	0.75
40467621--40467668	18	2.5	19	77	16	55	66	2	4	27	1.21
40473661--40473693	12	2.8	12	100	0	66	18	27	18	36	1.94
40473796--40473835	16	2.5	16	91	0	62	47	2	7	42	1.45
40473845--40474024	68	2.9	61	89	8	265	40	5	9	45	1.58
40473908--40473935	9	3.1	9	100	0	56	32	0	10	57	1.33
40473824--40473994	68	2.5	68	97	1	319	39	4	8	47	1.54
40474091--40474135	24	1.9	23	90	4	72	62	2	0	35	1.08
40480267--40480317	14	3.5	14	75	19	59	41	1	3	52	1.31
40480262--40480332	30	2.4	30	95	4	126	40	4	2	52	1.36
40483920--40483944	13	1.9	13	100	0	50	20	0	0	80	0.72
40487305--40487340	17	2.1	17	100	0	72	66	0	16	16	1.25
40489785--40489829	23	1.9	24	90	4	74	60	2	0	37	1.09
40490043--40490096	28	2.0	28	88	3	83	42	9	5	42	1.60
40490213--40490288	10	7.1	11	72	19	63	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40490216--40490287	18	3.8	18	77	12	72	0	30	0	69	0.89
40490217--40490287	14	5.2	14	74	16	60	0	29	0	70	0.88
40490185--40490288	32	3.2	32	72	20	90	0	33	0	66	0.92
40491279--40491312	16	2.0	17	88	11	52	50	0	0	50	1.00
40492230--40492280	22	2.3	22	96	0	93	27	31	0	41	1.56
40492324--40492388	29	2.2	31	88	5	98	36	0	0	63	0.95
40492701--40492846	73	2.0	73	98	0	283	28	24	23	22	1.99
40493530--40493554	7	3.6	7	100	0	50	28	0	12	60	1.32
40494498--40494553	24	2.3	24	87	0	85	46	32	19	1	1.61
40494790--40495675	28	30.4	28	85	7	1115	49	24	0	26	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205