genome.fa.s19.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  104  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30758324--30758367	19	2.4	19	92	3	72	81	0	18	0	0.68
30758317--30758367	6	8.3	6	85	10	68	80	0	19	0	0.71
30759999--30760168	93	1.8	93	80	2	207	29	20	23	26	1.99
30759852--30760353	260	1.9	260	91	1	819	27	20	25	26	1.99
30760375--30760701	44	7.5	44	69	17	157	29	19	22	28	1.98
30760503--30760838	44	7.6	46	70	14	169	29	18	23	28	1.98
30760508--30760753	133	1.9	129	80	11	286	27	18	24	29	1.98
30760923--30761142	44	5.1	44	87	7	319	25	15	28	30	1.96
30760921--30761142	82	2.6	85	89	5	326	26	15	27	30	1.96
30760945--30761176	126	1.8	126	86	3	333	26	16	26	30	1.97
30761153--30761438	88	3.2	88	69	12	244	30	19	24	25	1.98
30761240--30761353	44	2.6	44	88	0	156	28	16	24	29	1.97
30761069--30761450	176	2.2	176	87	4	540	30	18	24	26	1.98
30764333--30764432	13	7.6	13	72	8	62	43	1	20	36	1.59
30780615--30780985	123	3.0	122	79	3	386	32	18	22	26	1.97
30781023--30781170	41	3.6	40	78	6	145	19	19	27	33	1.96
30782262--30782331	14	4.8	14	74	13	61	30	0	34	35	1.58
30782655--30782785	70	1.9	69	93	1	226	29	16	24	30	1.96
30782766--30783400	270	2.4	270	83	4	773	34	14	18	32	1.92
30783166--30783633	233	2.0	233	85	4	642	35	14	19	29	1.92
30784373--30784492	60	2.0	59	93	1	204	24	8	25	42	1.82
30784874--30784926	23	2.3	23	78	15	65	9	22	11	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30785284--30785308	11	2.3	11	100	0	50	8	16	0	76	1.02
30786173--30786264	13	7.0	13	75	11	80	42	9	4	43	1.57
30786196--30786273	40	2.0	40	92	0	129	42	10	3	43	1.56
30786283--30786678	9	45.4	9	70	15	235	42	20	2	34	1.64
30786293--30786385	25	3.6	25	81	8	98	47	21	1	30	1.58
30786311--30786426	41	2.8	41	77	13	53	45	22	1	30	1.62
30786458--30786678	25	8.4	27	73	13	169	41	22	2	34	1.66
30786292--30786683	16	23.0	18	68	15	138	42	20	2	34	1.64
30786649--30786683	9	3.9	9	92	0	52	42	14	0	42	1.45
30792145--30792194	21	2.4	21	86	0	73	34	14	46	6	1.69
30792548--30792792	43	5.8	42	79	4	201	28	19	25	26	1.99
30792561--30792792	85	2.7	83	77	8	245	27	19	25	27	1.99
30800998--30801144	75	2.0	75	89	5	226	39	18	26	15	1.90
30803703--30803844	57	2.6	57	87	6	197	23	19	27	30	1.98
30803922--30804193	102	2.7	102	87	4	395	23	19	25	31	1.98
30804097--30804229	33	3.7	34	72	20	119	22	21	26	30	1.99
30808029--30808065	17	2.1	18	90	10	58	43	0	5	51	1.24
30810146--30810206	20	3.0	21	66	9	63	16	29	18	36	1.92
30810084--30810206	40	3.1	40	84	0	156	16	28	17	37	1.92
30816606--30816642	16	2.3	16	95	0	65	43	18	21	16	1.88
30827576--30827971	84	4.7	84	95	0	675	45	11	10	33	1.74
30827510--30827971	168	2.8	168	90	1	685	44	12	10	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30828023--30828195	88	2.0	88	86	4	242	40	8	15	35	1.78
30827577--30828228	84	7.6	87	83	7	303	42	10	12	34	1.77
30830893--30830942	25	2.0	25	100	0	100	28	12	12	48	1.76
30833260--30833324	31	2.1	31	85	0	85	49	23	3	24	1.64
30834202--30834242	20	2.0	21	85	4	57	43	4	2	48	1.37
30843349--30843380	17	1.9	17	93	6	57	56	3	0	40	1.15
30845226--30845263	16	2.2	18	90	9	62	39	5	5	50	1.48
30855968--30856010	20	2.2	20	86	0	59	53	0	23	23	1.46
30858170--30858194	12	2.1	12	100	0	50	8	28	16	48	1.74
30860606--30860630	12	2.1	12	100	0	50	0	24	0	76	0.80
30864572--30864644	37	2.0	37	81	7	87	54	21	6	16	1.65
30867539--30867595	24	2.5	23	78	10	64	8	17	1	71	1.19
30868013--30868085	37	2.0	37	81	7	87	54	21	6	16	1.65
30872118--30872199	28	2.9	29	78	10	89	42	9	13	34	1.77
30872178--30872239	28	2.2	29	79	2	72	54	11	6	27	1.60
30873046--30873145	42	2.4	42	84	0	128	24	29	25	22	1.99
30873914--30874029	38	3.1	38	83	1	153	38	28	21	11	1.88
30878792--30878821	13	2.2	14	94	5	53	80	6	0	13	0.91
30881986--30882038	23	2.4	22	76	20	56	9	18	1	69	1.25
30885857--30885906	17	2.8	18	87	6	75	42	42	0	16	1.47
30885888--30885965	38	2.0	39	95	2	140	51	28	2	17	1.59
30886097--30886168	37	1.9	37	97	0	135	31	6	13	47	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30886175--30886215	9	4.6	9	84	0	55	29	7	14	48	1.71
30886175--30886216	18	2.3	18	95	0	75	28	7	14	50	1.69
30892692--30892717	12	2.2	12	100	0	52	23	38	30	7	1.83
30896386--30896429	23	1.9	23	90	0	70	36	9	15	38	1.80
30898349--30898378	12	2.5	12	94	0	51	6	20	40	33	1.78
30898990--30899034	20	2.2	20	84	0	54	31	15	8	44	1.77
30900752--30900781	14	2.1	14	93	0	51	6	0	30	63	1.20
30913180--30913210	10	3.1	10	100	0	62	70	9	0	19	1.14
30913276--30913307	16	2.0	16	93	0	55	78	6	3	12	1.06
30913263--30913295	11	3.3	10	88	12	50	81	6	0	12	0.85
30918228--30919246	128	7.9	128	91	2	1436	23	23	20	32	1.98
30923233--30923257	13	1.9	13	100	0	50	12	0	0	88	0.53
30927521--30927551	3	10.3	3	92	0	53	67	3	0	29	1.06
30928949--30929151	32	6.3	31	78	5	158	38	21	19	20	1.93
30928975--30929151	66	2.7	65	81	5	207	38	22	19	19	1.93
30929197--30929260	27	2.4	27	80	12	71	31	21	25	21	1.98
30929324--30929383	24	2.5	23	78	7	66	45	21	10	23	1.82
30929442--30929760	27	12.0	27	78	4	317	26	20	18	35	1.95
30929432--30929757	53	6.1	52	79	6	273	26	21	17	34	1.96
30929722--30929809	27	3.3	27	80	6	99	20	18	21	39	1.92
30929432--30929809	133	2.9	131	83	4	465	24	20	18	35	1.95
30938071--30938118	22	2.2	22	100	0	96	37	18	8	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30938376--30938971	295	2.0	295	97	0	1129	36	20	13	28	1.91
30940697--30940930	51	4.6	51	77	7	217	29	25	17	26	1.97
30957892--30958102	40	5.3	40	89	4	239	23	20	27	28	1.99
30959892--30959927	17	2.1	17	89	0	54	22	2	2	72	1.11
30973511--30973566	27	2.0	29	83	13	73	42	1	16	39	1.58
30979938--30980122	79	2.3	82	84	7	238	25	27	22	24	2.00
30979919--30980122	40	5.1	40	82	8	238	25	27	22	25	2.00
30987912--30988096	79	2.3	82	84	7	238	25	27	22	24	2.00
30987893--30988096	40	5.1	40	82	8	238	25	27	22	25	2.00
30992073--30992114	17	2.4	17	84	4	57	61	4	0	33	1.17
30993819--30994008	96	2.0	96	88	2	283	35	18	13	33	1.89
31000782--31000967	90	2.0	91	82	4	223	39	19	7	33	1.80
31001014--31001049	16	2.2	17	90	9	58	75	0	5	19	1.00
31001054--31001091	20	2.0	20	89	5	60	50	0	2	47	1.15
31001398--31001469	20	3.7	19	75	8	65	29	4	6	59	1.42
31004654--31004707	19	2.8	19	94	0	99	37	9	16	37	1.81
31004654--31004733	19	3.9	20	82	11	83	36	8	16	38	1.79
31004914--31004958	23	2.0	23	81	0	54	22	0	15	62	1.33
31005183--31005259	3	25.7	3	97	0	145	32	0	0	67	0.91
31010161--31010193	14	2.3	15	89	5	50	27	12	33	27	1.92
31011450--31011521	22	3.2	22	66	14	65	56	2	22	18	1.53
31011442--31011512	22	3.1	23	65	15	65	54	1	23	19	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31011450--31011522	23	3.2	23	66	14	69	57	2	21	17	1.52
31012661--31012844	40	4.6	40	83	6	205	23	21	27	27	1.99
31012661--31012841	80	2.3	81	84	9	230	23	21	27	27	1.99
31019438--31019639	111	1.8	109	87	7	300	31	21	17	28	1.96
31020375--31020495	61	2.0	61	96	0	224	45	9	30	14	1.77
31020753--31020924	79	2.2	79	84	3	220	25	21	27	25	1.99
31020700--31020922	40	5.6	39	81	8	209	25	21	27	25	1.99
31020780--31020957	79	2.2	80	80	3	191	25	21	28	24	1.99
31022554--31022597	20	2.2	20	88	8	63	43	22	27	6	1.78
31025784--31025855	35	2.1	35	89	0	108	34	6	9	48	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205