genome.fa.s19.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  138  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41888876--41888939	31	2.1	31	93	0	110	37	15	23	23	1.93
41890358--41890533	46	3.8	46	79	12	207	21	20	29	28	1.98
41890354--41890525	93	1.8	93	93	0	299	20	20	30	27	1.98
41890785--41890998	107	2.0	107	94	0	374	21	14	17	45	1.85
41891941--41892064	48	2.6	48	88	0	185	27	29	16	26	1.97
41893533--41893705	43	4.0	43	82	6	190	38	23	16	21	1.92
41893533--41893705	86	2.0	86	86	2	240	38	23	16	21	1.92
41898494--41898547	20	2.6	21	82	11	67	35	0	7	57	1.27
41898537--41898575	11	3.5	11	92	0	69	28	2	0	69	1.02
41898533--41898574	19	2.2	19	87	8	59	26	2	0	71	0.98
41906915--41907096	46	4.0	46	91	1	285	39	15	23	21	1.92
41920986--41921091	48	2.2	47	83	9	126	58	1	24	15	1.47
41922748--41922804	20	2.8	20	81	2	69	28	35	14	22	1.93
41923125--41923427	152	2.0	152	98	0	588	29	10	31	29	1.90
41930406--41930448	16	2.7	16	100	0	86	16	30	32	20	1.95
41931352--41931479	64	2.0	64	96	0	238	21	20	28	29	1.98
41932350--41932405	28	2.0	28	89	0	85	32	19	25	23	1.98
41936040--41936097	27	2.1	27	81	6	64	34	12	20	32	1.90
41941360--41941622	40	6.6	40	88	3	325	24	20	27	26	1.99
41941399--41941657	80	3.3	80	85	3	256	25	20	27	25	1.99
41949349--41949572	40	5.6	40	91	1	308	24	20	28	26	1.99
41949310--41949572	80	3.3	80	85	3	318	23	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41949310--41949572	120	2.2	120	82	4	318	23	20	28	26	1.99
41960681--41960788	44	2.5	43	85	7	139	32	28	18	20	1.96
41960627--41960787	43	3.8	42	77	12	150	29	27	18	24	1.98
41960626--41960788	85	1.9	85	81	8	197	30	27	17	23	1.97
41961785--41961819	17	2.1	17	100	0	70	45	17	5	31	1.71
41964998--41965094	38	2.6	38	89	0	149	29	19	19	30	1.97
41967975--41968292	48	6.7	46	74	11	198	29	18	27	25	1.98
41968015--41968243	96	2.4	96	81	0	269	29	17	28	24	1.97
41967962--41968294	144	2.3	144	83	3	404	28	18	27	25	1.98
41968015--41968293	96	2.9	94	77	7	265	28	17	28	25	1.98
41973484--41973825	85	4.0	85	99	0	666	41	22	3	32	1.72
41974868--41975031	56	2.9	55	87	1	220	31	26	15	26	1.96
41975667--41975724	26	2.2	26	96	0	107	39	20	0	39	1.53
41983525--41983688	56	2.9	55	87	1	220	31	26	15	26	1.96
41984324--41984381	26	2.2	26	96	0	107	39	20	0	39	1.53
41991895--41992220	47	6.9	47	75	14	230	32	11	29	27	1.91
41991894--41992116	70	3.2	70	97	1	410	32	10	28	27	1.90
41991895--41992153	117	2.2	117	83	9	316	32	11	28	27	1.91
41992062--41992137	23	3.2	25	62	24	63	28	13	34	23	1.92
41992221--41992330	50	2.2	50	96	0	202	37	4	24	33	1.76
41992390--41992498	37	2.9	37	94	0	182	22	18	31	27	1.97
41994682--41994816	56	2.4	56	90	4	211	29	23	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41996183--41996388	60	3.5	60	75	12	169	32	12	25	30	1.92
41999984--42000042	30	2.0	30	93	0	100	28	3	13	54	1.55
42012102--42012130	14	2.1	14	100	0	58	34	27	17	20	1.95
42015287--42015480	40	4.9	40	88	0	282	23	27	23	26	2.00
42019348--42020432	542	2.0	542	91	0	1758	30	24	16	28	1.97
42028419--42028589	85	2.0	85	98	0	333	19	21	29	28	1.98
42028888--42029032	73	2.0	73	97	0	272	26	21	35	17	1.95
42029112--42029324	108	2.0	108	98	0	408	32	9	27	30	1.88
42043936--42044112	49	3.7	47	82	5	205	31	9	31	27	1.89
42046997--42047027	16	1.9	16	93	0	53	45	12	12	29	1.80
42055143--42055242	27	3.7	27	79	2	94	22	22	13	43	1.87
42055141--42055255	53	2.2	53	85	1	149	21	22	14	40	1.90
42055170--42055264	27	3.6	27	84	8	95	20	20	15	44	1.87
42060261--42060341	42	1.9	43	87	2	119	24	22	37	16	1.93
42069645--42069669	13	1.9	13	100	0	50	8	0	24	68	1.16
42070750--42070782	12	2.8	12	90	4	50	36	3	9	51	1.49
42070644--42070850	112	1.8	111	88	2	306	42	4	14	39	1.66
42071183--42071239	29	2.0	29	96	0	105	28	19	28	24	1.98
42071217--42071366	41	3.7	41	89	1	212	28	17	28	26	1.97
42081706--42081741	12	3.0	12	87	0	54	38	13	16	30	1.88
42081950--42082000	5	10.0	5	75	12	50	62	1	0	35	1.06
42081950--42082000	16	3.3	16	76	15	54	62	1	0	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42083640--42083729	45	2.0	45	95	0	162	41	16	18	23	1.90
42086377--42086401	13	1.9	13	100	0	50	8	0	24	68	1.16
42087482--42087514	12	2.8	12	90	4	50	36	3	9	51	1.49
42087376--42087579	112	1.8	112	95	0	372	41	4	14	39	1.66
42087920--42088069	41	3.7	41	88	0	219	29	18	27	25	1.98
42093290--42093372	28	3.0	28	68	7	69	39	18	16	25	1.91
42100501--42100542	21	2.0	21	86	9	59	47	2	11	38	1.53
42101580--42101708	43	3.0	42	78	10	127	24	19	27	29	1.98
42106662--42106839	27	6.6	27	83	3	205	26	15	28	29	1.96
42106663--42106818	82	1.9	81	88	3	233	26	15	28	29	1.96
42106659--42106839	82	2.2	81	83	2	229	27	15	27	29	1.96
42108204--42108258	25	2.3	23	78	6	56	30	18	29	21	1.97
42112152--42112303	80	1.9	80	89	2	234	35	13	32	18	1.89
42112146--42112289	40	3.6	40	87	0	198	34	13	34	17	1.89
42112920--42113021	50	2.1	49	96	1	186	49	15	11	22	1.77
42122622--42122672	23	2.2	23	89	0	75	23	27	13	35	1.93
42123285--42123348	9	7.1	9	92	0	101	39	28	10	21	1.87
42123285--42123348	18	3.6	18	95	0	119	39	28	10	21	1.87
42123428--42123480	18	2.9	18	82	2	70	7	3	45	43	1.50
42124503--42124530	11	2.5	11	100	0	56	35	0	0	64	0.94
42128331--42128363	17	1.9	17	100	0	66	36	3	6	54	1.41
42131202--42131887	342	2.0	342	89	1	1061	39	16	21	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42138033--42138066	17	2.1	17	88	5	52	35	20	0	44	1.52
42141062--42141237	69	2.6	69	81	3	203	25	22	16	35	1.95
42149852--42149927	27	2.8	27	93	0	125	21	25	31	22	1.98
42150849--42150880	15	2.1	15	100	0	64	28	6	12	53	1.62
42157414--42157445	6	5.2	6	96	3	55	65	0	18	15	1.27
42157605--42157663	25	2.4	25	97	0	109	37	8	16	37	1.80
42159827--42159872	10	4.5	10	86	2	65	28	2	21	47	1.62
42166940--42166992	18	2.9	18	77	8	54	60	1	1	35	1.19
42167204--42167242	22	1.9	20	85	15	53	51	12	0	35	1.40
42167373--42167411	5	7.6	5	82	5	51	41	17	0	41	1.50
42174144--42174175	15	2.1	15	100	0	64	18	6	6	68	1.32
42177872--42177930	26	2.3	26	87	0	82	42	15	11	30	1.83
42184313--42184381	26	2.7	26	86	4	95	24	21	24	28	1.99
42189407--42189449	20	2.1	21	86	4	61	39	23	11	25	1.88
42190218--42190304	45	1.9	46	83	2	113	34	21	3	40	1.71
42192485--42192525	20	2.2	18	86	8	55	48	0	2	48	1.14
42197203--42197305	11	9.9	11	67	26	55	58	0	2	38	1.13
42197187--42197328	42	3.5	41	88	6	209	61	0	2	35	1.08
42197230--42197294	30	2.1	30	86	13	89	61	0	3	35	1.12
42201476--42201523	24	2.0	24	92	8	80	37	6	4	52	1.46
42201732--42201779	15	3.1	15	77	19	53	33	6	0	60	1.22
42203634--42203664	12	2.6	12	89	0	53	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42228789--42228823	11	3.2	11	95	0	61	62	0	8	28	1.24
42230318--42230369	27	1.9	27	88	0	77	21	32	26	19	1.97
42230475--42230536	4	15.5	4	78	18	67	74	0	24	1	0.91
42230475--42230536	18	3.6	17	78	20	58	74	0	24	1	0.91
42236930--42237131	105	1.9	108	84	7	275	60	13	1	23	1.41
42237619--42237657	20	1.9	19	90	10	60	48	0	5	46	1.24
42237730--42237763	13	2.5	14	85	9	52	26	0	0	73	0.83
42239391--42239500	10	10.8	10	72	21	61	57	2	0	39	1.19
42239375--42239460	20	4.4	19	77	11	84	59	1	1	38	1.13
42239375--42239460	31	2.9	30	83	13	106	59	1	1	38	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205