genome.fa.s19.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  143  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43365063--43365105	17	2.6	16	85	10	52	39	0	2	58	1.11
43368446--43368494	25	1.9	26	83	4	64	65	4	26	4	1.29
43368555--43368592	18	2.1	18	95	0	67	44	0	55	0	0.99
43368555--43368606	24	2.2	24	82	0	59	44	0	53	1	1.11
43377137--43377408	43	6.3	43	85	4	300	31	19	22	26	1.97
43382875--43382934	25	2.4	25	85	0	75	33	1	18	46	1.59
43382857--43383008	9	17.8	9	68	17	92	30	1	20	46	1.62
43382892--43382956	34	1.9	34	90	0	103	32	1	18	47	1.58
43382919--43383008	25	3.8	25	77	12	100	28	2	20	48	1.61
43382869--43382982	59	1.9	59	89	0	174	29	1	20	48	1.60
43382900--43382975	34	2.3	34	84	4	102	30	1	21	47	1.59
43382903--43383001	25	5.1	19	69	27	73	29	1	19	50	1.54
43383268--43383296	2	14.5	2	100	0	58	51	0	0	48	1.00
43383298--43383387	17	4.9	17	76	12	81	42	0	11	46	1.39
43383297--43383479	39	4.8	37	75	14	131	41	1	11	45	1.50
43383428--43383492	13	4.9	13	75	17	71	43	1	9	46	1.45
43384342--43384371	13	2.3	13	94	0	51	50	10	0	40	1.36
43386798--43386973	15	11.9	15	73	13	98	33	43	0	22	1.57
43386798--43386922	22	5.6	22	77	5	90	32	44	0	22	1.59
43386845--43386972	7	17.7	7	78	6	112	33	46	0	20	1.51
43386845--43386978	29	4.9	28	71	15	109	33	45	0	20	1.52
43386851--43386993	51	2.8	51	92	1	207	34	44	0	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43386836--43386973	22	6.3	22	81	8	124	34	44	0	21	1.52
43388163--43388230	15	4.9	14	71	16	52	41	35	0	23	1.55
43388166--43388203	15	2.5	15	86	0	58	36	42	0	21	1.53
43388721--43389054	41	8.1	41	82	0	391	34	22	25	17	1.96
43388721--43389054	82	4.1	82	96	0	578	34	22	25	17	1.96
43398893--43398990	40	2.5	41	73	9	96	20	27	20	31	1.97
43401534--43402298	382	2.0	382	98	0	1494	28	17	9	44	1.81
43406890--43406929	20	2.0	20	85	9	55	47	12	0	40	1.41
43407348--43407385	18	2.1	18	90	9	60	34	13	7	44	1.72
43420690--43420741	21	2.4	21	80	3	59	17	25	40	17	1.90
43427956--43428065	55	2.0	55	94	0	193	40	11	18	30	1.86
43434384--43434510	55	2.3	55	91	0	200	26	20	29	23	1.99
43437598--43437691	20	4.9	19	72	16	86	38	14	11	35	1.83
43437598--43437710	57	2.0	55	94	3	199	38	15	11	34	1.84
43437598--43437690	37	2.4	37	72	15	91	38	15	11	34	1.84
43437598--43437718	55	2.2	57	91	5	185	38	16	11	33	1.85
43438785--43438872	44	2.0	44	88	4	133	29	32	7	29	1.86
43446617--43446660	23	1.9	23	90	9	72	43	22	4	29	1.73
43456265--43456645	44	8.7	44	89	1	514	29	19	26	24	1.98
43461866--43461935	36	1.9	37	97	2	133	34	32	18	14	1.91
43467441--43467471	16	1.9	16	93	0	53	35	6	9	48	1.62
43471889--43471915	14	1.9	14	100	0	54	70	0	14	14	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43483917--43484157	121	2.0	121	90	1	376	28	12	27	31	1.93
43486018--43486068	15	3.3	15	79	12	59	62	5	29	1	1.29
43490160--43490185	3	8.7	3	100	0	52	65	0	0	34	0.93
43495502--43495544	22	2.0	22	95	0	77	9	20	27	41	1.83
43495681--43495861	43	4.3	42	76	5	143	30	30	18	19	1.96
43495659--43495840	43	4.4	41	74	11	138	26	31	18	23	1.97
43496213--43496325	21	5.4	21	80	0	109	5	41	16	36	1.71
43496296--43496462	66	2.5	66	86	3	212	13	28	17	40	1.88
43501768--43501887	16	7.9	16	69	19	96	35	1	17	45	1.58
43501782--43501936	25	6.2	25	77	11	129	38	1	15	45	1.55
43501808--43502640	34	24.5	34	70	14	320	40	1	13	44	1.52
43501943--43501975	16	2.1	16	94	0	57	27	0	27	45	1.54
43501960--43502643	99	6.9	99	95	1	1162	41	1	12	44	1.51
43502609--43502680	31	2.4	29	81	4	81	37	4	11	47	1.59
43501960--43502791	65	12.7	65	74	10	642	41	2	12	44	1.54
43502721--43502791	31	2.3	31	97	0	133	36	0	14	49	1.43
43502746--43502845	9	11.1	9	74	19	68	38	0	15	47	1.45
43502778--43502810	16	2.1	16	100	0	66	30	0	24	45	1.53
43502747--43502844	47	2.0	49	86	5	137	36	0	15	47	1.45
43502909--43502941	16	2.1	16	94	0	57	27	18	3	51	1.60
43503043--43503121	38	2.1	38	100	0	158	39	22	13	24	1.91
43503877--43503939	33	1.9	33	93	0	108	65	14	0	20	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43503893--43503931	19	2.0	19	85	5	51	69	10	0	20	1.17
43504293--43504382	38	2.4	38	90	7	155	46	11	20	22	1.81
43505465--43505518	23	2.5	22	82	8	58	44	0	7	48	1.31
43505540--43505583	21	2.2	20	88	12	63	13	6	0	79	0.92
43511073--43511240	9	19.3	9	70	14	129	43	20	2	33	1.65
43511174--43511253	25	3.2	25	73	7	54	43	20	3	32	1.69
43517746--43517778	17	2.0	17	88	5	50	51	9	9	30	1.64
43526761--43527193	36	12.0	36	99	0	848	38	11	19	30	1.87
43534399--43534550	36	3.6	45	78	17	182	35	13	22	28	1.92
43535838--43535889	20	2.6	20	77	17	54	34	9	0	55	1.32
43538019--43538044	13	2.0	13	100	0	52	30	7	15	46	1.74
43538078--43538117	19	2.0	20	85	4	55	25	20	7	47	1.75
43539965--43540004	19	2.1	19	90	9	64	15	12	5	67	1.38
43540943--43540990	7	6.7	7	77	13	53	66	2	14	16	1.34
43540943--43541004	15	4.3	15	76	17	51	66	1	16	16	1.34
43540942--43540998	21	2.6	21	83	8	69	66	1	15	15	1.33
43542257--43542564	163	1.9	163	85	2	422	31	16	24	27	1.96
43542420--43542838	132	3.2	130	88	2	577	30	16	24	28	1.97
43542541--43542762	44	5.0	44	69	8	146	30	15	23	30	1.96
43542830--43542971	44	3.2	44	85	1	185	30	13	27	28	1.94
43542989--43543134	44	3.4	44	72	9	147	29	21	25	23	1.99
43542976--43543134	85	1.9	85	88	2	239	28	22	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43546845--43546893	21	2.3	21	100	0	98	42	14	14	28	1.84
43548873--43548897	2	12.5	2	100	0	50	48	0	0	52	1.00
43555830--43555901	29	2.4	29	81	4	81	26	9	12	51	1.70
43558930--43559005	36	2.1	36	92	0	125	46	1	2	50	1.24
43559097--43559139	17	2.5	18	82	17	56	34	2	0	62	1.08
43561518--43561547	7	4.1	7	95	4	51	3	13	0	83	0.77
43563839--43563927	46	1.9	46	95	0	160	10	30	10	49	1.69
43568763--43568791	6	4.8	6	100	0	58	82	0	0	17	0.66
43572280--43572953	105	6.4	105	81	1	724	33	13	18	34	1.89
43581226--43581546	142	2.3	140	89	2	473	27	21	18	31	1.97
43581414--43581648	98	2.4	98	97	0	443	27	21	18	32	1.97
43581501--43581818	142	2.2	142	94	0	573	27	21	19	31	1.97
43581274--43581790	240	2.2	240	92	1	842	27	21	18	32	1.97
43601032--43601070	20	2.0	20	94	0	69	15	35	17	30	1.91
43602377--43602470	25	3.8	25	73	16	86	28	22	20	28	1.98
43610576--43610657	20	4.2	18	79	15	65	18	31	12	37	1.87
43619822--43619901	15	5.4	15	77	7	83	10	18	13	57	1.64
43619813--43619900	30	3.0	30	80	11	92	10	18	15	55	1.68
43630745--43630817	25	2.9	25	82	11	87	24	20	30	24	1.99
43630781--43630830	25	2.0	25	88	0	73	30	20	28	22	1.98
43635792--43635850	31	1.9	31	96	0	109	40	18	13	27	1.88
43643253--43643338	40	2.2	39	87	2	118	30	30	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43644313--43644380	34	2.0	34	97	0	127	38	16	4	41	1.68
43648650--43648817	40	4.2	40	83	3	187	23	20	27	27	1.99
43648650--43648817	80	2.1	80	86	3	232	23	20	27	27	1.99
43649054--43649095	22	1.9	22	85	9	59	33	9	14	42	1.78
43650582--43650689	43	2.5	44	78	4	121	31	26	14	26	1.95
43654229--43654416	40	4.7	40	92	0	313	30	20	27	21	1.98
43658997--43659022	12	2.2	12	100	0	52	11	15	15	57	1.65
43659112--43659281	85	2.0	85	98	0	331	19	20	16	44	1.87
43659949--43660110	66	2.5	66	95	0	288	41	16	26	16	1.88
43660441--43660553	42	2.7	42	88	0	163	21	19	30	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205