genome.fa.s19.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  52  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15563194--15563254	18	3.3	18	81	4	68	50	1	9	37	1.45
15566850--15566895	16	3.2	16	80	20	57	34	0	0	65	0.93
15566860--15566915	22	2.6	22	78	16	64	35	0	0	64	0.94
15566975--15567085	31	3.7	29	76	8	87	34	10	12	42	1.78
15570866--15572690	912	2.0	912	100	0	3650	35	13	20	30	1.92
15573923--15573974	24	2.2	24	89	0	77	36	3	9	50	1.54
15573923--15573986	24	2.7	24	85	4	76	35	3	12	48	1.57
15581601--15581647	23	2.0	23	84	8	60	36	4	8	51	1.52
15583235--15583277	2	21.5	2	100	0	86	0	48	0	51	1.00
15590064--15590115	24	2.2	24	85	0	68	57	5	1	34	1.33
15590332--15590382	24	2.1	24	85	3	66	56	5	3	33	1.42
15590039--15590579	268	2.0	266	90	2	843	43	8	7	40	1.63
15590688--15590743	23	2.4	23	85	14	71	10	35	0	53	1.36
15594665--15594741	38	2.0	38	97	0	145	18	16	20	44	1.87
15596511--15596564	17	3.2	17	86	0	72	14	22	33	29	1.94
15599508--15599533	9	2.9	9	100	0	52	23	11	7	57	1.59
15608901--15609071	72	2.4	72	88	4	258	55	13	5	25	1.59
15609494--15609541	18	2.7	18	96	0	87	39	12	12	35	1.81
15611837--15611871	11	3.2	11	87	0	52	48	25	22	2	1.64
15611914--15611941	14	2.0	14	100	0	56	50	21	28	0	1.49
15624716--15624968	125	2.0	125	100	0	506	34	10	18	36	1.85
15634945--15634987	15	2.9	15	82	3	52	23	0	2	74	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15634948--15635026	24	3.4	23	80	13	81	24	0	2	73	0.96
15639868--15639956	34	2.6	33	79	10	81	31	11	17	39	1.85
15652478--15652518	18	2.3	18	86	0	55	29	7	17	46	1.74
15655457--15655525	26	2.8	26	80	12	74	26	27	17	28	1.97
15662652--15662692	18	2.3	18	80	12	50	24	0	2	73	0.96
15662959--15663015	14	4.1	14	79	6	53	52	0	14	33	1.41
15666159--15666210	27	2.0	27	85	11	72	32	0	9	57	1.31
15666700--15666734	18	2.1	17	89	10	54	34	0	2	62	1.10
15666805--15666880	36	2.1	36	95	4	136	35	19	6	38	1.78
15669696--15669864	85	2.0	86	86	1	241	28	18	21	31	1.97
15675985--15676072	14	6.3	14	77	0	68	34	15	17	32	1.91
15675991--15676070	28	2.9	28	75	0	79	36	15	13	35	1.86
15685856--15685902	14	3.3	14	80	14	51	63	2	2	31	1.18
15688821--15689203	192	2.0	192	97	0	721	37	12	15	34	1.85
15691846--15691903	16	3.6	16	73	17	57	27	18	0	53	1.45
15692330--15692368	15	2.7	15	88	4	53	10	0	33	56	1.33
15692348--15692429	42	2.0	41	90	2	128	24	0	28	47	1.52
15692454--15692552	34	2.8	34	76	13	103	36	1	13	49	1.48
15692608--15693125	124	4.2	126	85	4	676	37	17	16	28	1.92
15696743--15696775	3	11.0	3	100	0	66	66	0	0	33	0.92
15697776--15697821	17	2.8	18	84	15	64	28	41	30	0	1.56
15697960--15698041	32	2.6	30	76	14	76	28	2	3	65	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15698368--15698406	17	2.2	17	86	13	53	56	5	0	38	1.22
15699459--15699496	19	2.0	19	90	10	60	50	2	0	47	1.15
15718855--15718942	43	2.0	43	100	0	176	35	15	18	30	1.92
15718877--15720347	736	2.0	736	99	0	2915	32	14	18	33	1.91
15721201--15721232	10	3.2	10	90	0	55	40	6	0	53	1.26
15721170--15721225	29	1.9	29	88	0	85	32	19	3	44	1.68
15722671--15722766	45	2.1	45	92	3	158	37	13	12	36	1.83
15724990--15725015	9	2.9	9	100	0	52	34	19	34	11	1.88
15725212--15725242	16	1.9	16	100	0	62	41	0	12	45	1.42
15725422--15725525	52	2.0	52	94	0	181	35	11	25	26	1.90
15725686--15725726	16	2.6	16	88	0	64	43	4	4	46	1.46
15728900--15728957	20	2.8	21	79	10	73	36	0	3	60	1.14
15730258--15730297	20	2.0	20	85	4	55	47	5	15	32	1.66
15735948--15735989	15	2.6	16	81	14	50	35	9	0	54	1.33
15742793--15742857	32	2.0	32	96	0	121	36	26	9	27	1.87
15745100--15745135	2	18.0	2	94	0	63	47	0	0	52	1.00
15747913--15747945	16	2.0	17	88	5	50	51	15	15	18	1.77
15749558--15749588	16	1.9	16	93	0	53	29	6	16	48	1.70
15750753--15750785	11	2.9	12	86	13	52	33	0	0	66	0.92
15750908--15750970	30	2.1	30	96	0	117	57	12	3	26	1.51
15752815--15752851	19	1.9	19	89	10	58	37	5	2	54	1.38
15753457--15753502	18	2.6	18	90	10	69	4	26	0	69	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15753473--15753514	16	2.7	16	82	10	52	11	23	0	64	1.27
15754953--15756194	423	2.9	423	92	0	1982	33	20	14	32	1.92
15757592--15757626	18	1.9	18	94	0	61	77	2	0	20	0.90
15758004--15758056	12	4.7	11	77	11	54	64	3	0	32	1.12
15758004--15758054	21	2.5	20	84	12	68	64	3	0	31	1.11
15757998--15758075	33	2.4	34	82	10	99	65	2	2	29	1.19
15758111--15758159	25	2.0	25	91	0	80	65	2	0	32	1.04
15759725--15760134	45	9.1	45	64	17	138	27	28	15	29	1.96
15759725--15760269	90	6.1	90	88	1	772	27	27	15	30	1.96
15771761--15771913	67	2.3	64	80	7	164	54	11	5	28	1.58
15771984--15772018	18	1.9	18	94	0	61	74	5	0	20	1.02
15772403--15772472	12	6.0	12	78	9	65	70	2	0	27	1.02
15772398--15772453	21	2.8	20	80	20	71	64	3	0	32	1.11
15772393--15772468	33	2.3	33	84	6	102	68	3	0	27	1.07
15772504--15772551	25	2.0	24	91	4	78	64	2	0	33	1.05
15772510--15772570	12	5.1	12	75	11	54	62	3	0	34	1.12
15777150--15777364	102	2.1	102	99	0	421	38	8	13	40	1.75
15779529--15779579	20	2.6	20	78	3	59	62	1	1	33	1.17
15782629--15782660	4	8.0	4	100	0	64	50	25	0	25	1.50
15791133--15791167	16	2.2	16	94	0	61	48	8	0	42	1.33
15793337--15793373	14	2.6	14	91	4	56	48	0	5	45	1.25
15794936--15794973	18	2.1	18	90	0	58	50	2	13	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15794992--15795042	20	2.7	20	81	6	70	49	7	13	29	1.70
15797724--15797888	39	4.2	39	95	0	276	21	20	30	28	1.98
15806004--15806193	40	4.4	39	68	23	132	30	16	23	30	1.96
15806045--15806236	44	4.3	44	70	18	137	32	16	22	29	1.95
15805998--15806264	133	2.0	133	99	0	525	31	15	21	31	1.95
15806067--15806276	44	4.8	44	68	17	130	32	15	20	31	1.93
15807103--15807233	42	3.1	42	98	0	253	22	24	36	16	1.94
15823075--15823115	21	2.0	20	86	9	57	19	14	17	48	1.81
15828191--15828260	29	2.4	29	83	4	88	45	11	25	17	1.81
15828182--15828406	118	1.9	119	86	2	319	40	11	23	24	1.87
15830719--15830849	49	2.7	49	90	1	199	32	13	11	41	1.80
15838880--15838919	18	2.4	16	83	8	53	67	2	7	22	1.28
15851099--15851158	31	2.0	30	96	0	102	46	18	20	13	1.81
15852102--15852236	72	1.9	71	85	7	186	20	29	15	34	1.94
15863566--15863605	21	2.0	21	95	5	73	15	35	25	25	1.94
15866470--15866536	33	2.0	33	91	0	107	22	19	20	37	1.95
15867377--15867431	26	2.1	27	86	3	76	54	12	12	20	1.70
15867387--15867439	27	2.0	26	85	3	70	56	9	13	20	1.64
15873300--15873367	25	2.7	25	86	4	84	36	14	20	27	1.92
15878489--15878647	35	4.5	35	83	0	192	30	8	19	41	1.82
15882200--15882244	22	2.0	22	100	0	90	24	17	17	40	1.91
15886096--15886253	35	4.5	35	81	1	183	29	8	18	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15888653--15888683	15	2.1	15	93	0	53	19	12	16	51	1.76
15892538--15892715	27	6.6	27	84	3	205	29	28	15	26	1.96
15892559--15892714	82	1.9	81	88	3	233	29	28	15	26	1.96
15895427--15895539	57	2.0	57	94	0	199	30	13	30	25	1.94
15895524--15895583	30	2.0	30	100	0	120	30	23	13	33	1.93
15896610--15896672	31	2.0	31	93	0	108	46	14	17	22	1.84
15899947--15899998	27	2.0	26	84	3	68	17	26	21	34	1.95
15901864--15902109	123	2.0	123	97	0	465	21	16	32	29	1.95
15905258--15905295	19	2.0	19	89	0	58	36	7	28	26	1.84
15905630--15905823	67	3.0	64	75	20	222	39	2	6	51	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205