genome.fa.s19.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  145  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43860841--43861162	116	2.7	116	80	12	307	42	27	3	27	1.70
43861923--43861970	18	2.7	17	90	6	69	43	0	6	50	1.27
43862401--43862642	41	5.9	41	87	0	340	28	27	21	23	1.99
43862690--43862771	39	2.1	38	84	8	103	25	18	15	40	1.90
43869828--43869855	12	2.3	12	100	0	56	35	14	10	39	1.81
43869862--43869995	12	10.7	12	72	13	83	26	14	8	50	1.71
43870767--43870820	22	2.5	20	82	11	63	25	1	0	72	0.95
43878826--43878960	62	2.2	62	82	0	153	22	12	13	51	1.74
43892153--43892330	27	6.6	27	81	5	180	28	29	16	25	1.97
43892151--43892329	82	2.2	81	83	3	216	28	30	16	24	1.96
43894695--43894872	27	6.6	27	83	3	178	29	28	14	26	1.95
43894716--43894867	82	1.9	81	87	4	225	30	28	14	26	1.95
43894695--43894867	54	3.2	54	81	6	197	30	28	14	26	1.95
43903532--43904067	47	11.3	47	89	3	729	32	9	30	27	1.89
43903918--43904039	22	5.3	22	62	21	61	33	11	29	25	1.91
43906141--43906188	25	1.9	25	82	0	60	35	25	14	25	1.94
43906236--43906291	11	5.5	11	71	16	57	35	12	19	32	1.89
43906225--43906291	20	3.3	20	93	0	116	34	11	20	32	1.90
43906341--43906460	47	2.6	47	95	1	224	29	20	20	30	1.98
43906342--43906481	70	2.0	71	91	6	232	27	20	22	29	1.98
43906341--43906481	23	6.0	24	90	7	218	28	20	21	29	1.98
43906675--43906737	31	2.0	31	87	0	90	38	14	22	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43910090--43910119	15	1.9	16	93	6	53	26	6	0	66	1.16
43915936--43915970	16	2.2	16	94	0	61	22	0	0	77	0.78
43935960--43936041	42	2.0	42	88	7	123	21	47	13	17	1.81
43936159--43936235	31	2.5	31	89	0	118	23	25	18	32	1.97
43936448--43936524	25	3.1	24	83	5	91	25	20	22	31	1.98
43936571--43936618	11	4.6	11	80	12	57	33	18	12	35	1.89
43937945--43938092	73	2.0	73	89	2	226	28	31	10	29	1.91
43944398--43944492	25	3.8	25	87	8	122	29	21	23	26	1.99
43944373--43944492	50	2.4	49	79	9	136	28	21	22	27	1.99
43944535--43944571	20	1.9	19	89	10	58	35	16	10	37	1.83
43944623--43944670	25	1.9	25	82	0	60	29	14	22	33	1.94
43946313--43946410	50	2.0	50	95	0	178	52	21	4	22	1.64
43947441--43947598	27	5.9	27	83	1	176	32	20	20	25	1.97
43947448--43947598	54	2.8	53	89	4	207	32	19	21	25	1.97
43947441--43947589	81	1.9	80	85	1	208	33	21	20	24	1.97
43953884--43953968	24	3.5	24	79	7	93	25	28	17	28	1.98
43953884--43953991	49	2.2	48	82	8	121	26	28	17	26	1.98
43956141--43956297	43	3.7	42	79	13	178	29	25	19	25	1.99
43957207--43957236	15	2.0	15	93	0	51	43	13	0	43	1.43
43962336--43962420	43	2.0	43	88	0	125	27	15	24	32	1.95
43963564--43963599	15	2.4	15	90	0	54	36	19	16	27	1.93
43969774--43969933	47	3.4	47	90	0	230	20	13	21	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43970307--43970359	7	7.4	7	91	4	88	15	13	26	45	1.82
43978620--43978694	38	2.0	38	89	0	114	21	21	26	30	1.98
43978666--43978854	43	4.4	43	88	4	267	13	23	33	29	1.93
43981968--43982047	42	1.9	42	94	0	142	37	11	22	28	1.89
43983685--43983970	40	7.2	40	93	0	457	28	27	20	23	1.99
43991774--43991859	40	2.2	40	83	6	104	27	27	19	24	1.99
43994923--43995077	43	3.6	43	93	0	265	11	24	32	30	1.91
44001608--44001917	147	2.1	147	95	0	557	26	21	28	23	1.99
44001642--44001949	147	2.1	147	88	2	449	26	23	26	23	2.00
44003976--44004026	20	2.7	19	82	14	54	41	0	19	39	1.52
44004578--44004754	49	3.6	49	79	2	196	25	19	28	25	1.99
44004576--44004756	98	1.9	97	87	3	265	25	19	29	25	1.99
44007996--44008045	25	2.0	25	100	0	100	28	8	8	56	1.57
44009957--44010113	40	3.9	40	89	0	242	23	28	21	26	1.99
44009961--44010113	80	1.9	80	94	0	270	23	27	21	27	1.99
44015995--44016071	25	3.2	25	64	23	65	35	10	25	28	1.89
44015977--44016048	22	3.1	22	64	24	58	33	13	29	23	1.93
44015948--44016144	47	4.1	47	84	4	207	35	9	27	27	1.87
44016059--44016205	50	2.9	50	80	12	174	36	6	25	30	1.82
44016139--44016173	15	2.3	15	95	0	61	40	0	20	40	1.52
44016016--44016201	52	3.7	51	79	10	174	37	8	25	29	1.84
44016354--44016462	37	2.9	37	94	0	182	23	18	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44017728--44017999	40	6.8	40	92	0	418	25	22	27	24	2.00
44036978--44037504	67	7.9	67	95	2	918	21	28	16	33	1.95
44047545--44047665	43	2.8	44	88	2	165	38	23	14	24	1.92
44048260--44048353	45	2.1	45	100	0	188	53	19	6	21	1.67
44050237--44050293	30	1.9	30	96	0	105	38	26	12	22	1.89
44055160--44056102	43	22.0	43	96	1	1689	34	23	14	27	1.94
44061771--44061824	27	2.0	27	96	0	99	38	27	3	29	1.74
44074438--44074596	43	3.7	44	75	12	150	25	16	25	32	1.96
44074435--44074565	44	3.0	41	80	14	131	22	14	25	36	1.93
44075605--44075685	42	1.9	43	82	7	103	14	27	37	20	1.92
44078377--44078484	27	4.0	26	83	9	126	17	24	22	36	1.95
44078377--44078484	55	2.0	54	85	5	146	17	24	22	36	1.95
44083278--44083397	44	2.8	42	82	6	125	22	19	26	31	1.97
44083286--44083408	42	2.8	43	85	3	140	25	17	24	32	1.97
44086379--44086560	46	3.9	45	76	14	165	27	20	28	24	1.99
44093522--44093678	43	3.6	44	78	9	162	26	17	25	30	1.97
44093521--44093683	85	1.9	86	84	3	222	26	16	25	31	1.97
44116234--44116363	47	2.8	47	85	0	161	23	15	26	34	1.94
44119842--44119936	37	2.6	36	86	8	129	40	32	12	14	1.84
44124108--44124136	8	3.6	8	100	0	58	34	0	0	65	0.93
44124536--44124571	18	2.0	18	100	0	72	55	0	5	38	1.23
44126652--44126712	28	2.1	29	88	8	90	29	27	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44130548--44130586	19	2.1	19	85	9	53	61	5	0	33	1.18
44140001--44140247	123	2.0	123	92	1	406	39	17	12	31	1.86
44140842--44141009	46	3.6	45	78	16	166	29	20	27	21	1.98
44140999--44141042	22	2.0	22	100	0	88	27	22	27	22	1.99
44147290--44147509	46	4.6	48	79	12	199	23	32	17	26	1.96
44161613--44161654	21	2.0	21	90	0	66	50	7	2	40	1.43
44165126--44165235	40	2.8	40	87	4	152	24	25	24	25	2.00
44168304--44168352	20	2.5	20	89	0	71	53	0	24	22	1.47
44170243--44170293	24	2.1	25	96	3	95	50	3	15	29	1.62
44170361--44170531	87	2.0	87	90	2	272	35	5	10	47	1.62
44171022--44171839	6	136.3	6	100	0	1636	50	16	0	33	1.46
44182636--44182671	15	2.3	16	90	4	56	36	5	5	52	1.48
44183506--44183537	17	1.9	16	93	6	55	46	0	0	53	1.00
44197464--44197515	21	2.5	21	90	0	77	21	28	28	21	1.98
44199617--44199689	36	2.0	36	94	0	128	36	12	15	35	1.84
44203003--44203031	13	2.3	13	94	5	51	72	0	27	0	0.85
44215415--44215639	40	5.6	40	82	7	260	24	28	23	24	2.00
44215586--44215962	186	2.0	188	88	2	553	33	24	14	27	1.94
44223370--44223419	11	4.5	11	85	14	68	26	36	0	38	1.57
44225231--44225273	18	2.4	18	88	0	59	18	27	9	44	1.80
44225536--44225578	21	2.0	22	86	4	61	34	48	13	2	1.56
44225680--44225928	131	1.9	131	92	1	419	36	5	4	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44227485--44227553	34	2.0	34	100	0	138	26	30	2	40	1.70
44229051--44229350	124	2.4	124	88	5	437	28	19	15	36	1.92
44230157--44230199	16	2.5	17	88	7	61	6	9	2	81	0.95
44231808--44231849	4	10.5	4	80	10	50	23	4	2	69	1.20
44231808--44231846	16	2.4	16	87	12	62	23	5	2	69	1.21
44235307--44235347	17	2.5	17	77	18	50	63	2	4	29	1.28
44237621--44237684	31	2.1	30	85	8	85	56	3	1	39	1.25
44239344--44239402	28	2.1	28	100	0	118	38	13	22	25	1.90
44262322--44262371	26	1.9	26	91	0	82	26	12	16	46	1.81
44265524--44265586	22	3.0	22	77	9	60	12	36	20	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205