genome.fa.s19.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  68  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20366194--20366225	8	4.0	8	100	0	64	50	0	0	50	1.00
20366788--20366851	10	6.1	10	75	13	58	18	4	4	71	1.21
20366814--20366844	16	1.9	16	93	0	53	22	3	6	67	1.28
20371395--20371476	30	2.7	31	79	5	87	36	8	18	36	1.81
20371852--20371901	23	2.3	21	79	6	55	46	0	4	50	1.20
20372314--20372406	44	2.1	44	86	9	127	35	27	4	32	1.77
20372399--20372443	21	2.1	21	95	0	81	26	33	0	40	1.57
20372388--20372446	16	3.4	16	72	20	55	27	33	1	37	1.67
20372543--20372575	17	1.9	17	93	0	57	27	0	36	36	1.57
20380006--20380338	51	6.6	51	78	5	318	25	18	26	30	1.98
20380004--20380338	152	2.2	152	81	5	383	25	18	26	30	1.98
20391890--20391942	26	2.0	26	96	0	97	37	9	26	26	1.87
20394181--20394215	18	1.9	18	94	0	61	45	0	0	54	0.99
20397330--20397354	11	2.3	11	100	0	50	56	16	12	16	1.68
20400539--20400597	21	2.8	21	79	7	57	52	0	1	45	1.10
20400665--20400700	16	2.2	17	90	5	56	61	0	5	33	1.19
20400878--20400941	31	2.1	30	85	2	83	32	7	10	48	1.67
20409867--20409983	51	2.3	51	96	0	216	29	23	14	32	1.94
20418548--20418609	21	3.0	21	75	0	70	16	20	17	45	1.86
20418499--20418609	42	2.7	42	82	9	113	15	20	17	46	1.83
20429147--20429185	18	2.2	18	90	0	60	74	0	0	25	0.82
20431817--20431938	36	3.4	35	84	6	147	42	30	11	15	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20433172--20433198	13	2.1	13	100	0	54	48	7	7	37	1.59
20436215--20436255	20	2.0	20	85	0	55	14	14	24	46	1.82
20437178--20437220	20	2.2	20	95	0	77	30	11	34	23	1.90
20441499--20441973	236	2.0	236	94	0	833	33	16	18	31	1.93
20442258--20442411	61	2.6	59	81	10	170	41	0	3	53	1.24
20442599--20442647	16	3.1	16	87	0	71	30	32	0	36	1.58
20445091--20445124	6	5.7	6	96	0	59	38	11	0	50	1.39
20450698--20451079	49	7.8	49	82	2	392	24	25	16	33	1.96
20450698--20451079	147	2.6	147	82	1	444	24	25	16	33	1.96
20450698--20451052	98	3.6	98	87	0	476	23	26	15	33	1.95
20453072--20453114	21	2.0	21	100	0	86	39	27	9	23	1.85
20458008--20458045	19	2.0	20	94	5	69	26	13	5	55	1.59
20458236--20458310	20	3.7	20	79	10	89	16	18	13	52	1.75
20458236--20458285	21	2.5	20	93	3	82	18	16	14	52	1.76
20463014--20463046	17	2.0	17	88	5	50	30	6	0	63	1.18
20464725--20464884	29	5.5	28	76	9	142	33	18	6	41	1.77
20464807--20464853	14	3.3	14	72	16	51	31	10	6	51	1.62
20464726--20464867	29	4.9	28	77	9	151	31	20	7	40	1.79
20465247--20465290	3	14.7	3	83	9	54	70	0	27	2	0.99
20465284--20465322	10	4.0	9	81	18	51	84	0	15	0	0.62
20465281--20465314	13	2.5	14	85	9	52	82	0	17	0	0.67
20465285--20465322	13	2.9	13	84	7	51	84	0	15	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20465250--20465321	21	3.3	22	83	12	78	76	0	22	1	0.86
20465546--20465640	21	4.6	21	75	16	81	80	0	17	2	0.82
20465564--20465645	13	6.8	13	72	20	63	81	0	15	2	0.79
20465554--20465647	8	11.8	8	78	10	95	80	0	17	2	0.80
20465555--20465624	34	2.1	32	87	10	97	81	0	15	2	0.81
20477915--20478692	160	4.9	158	86	6	984	27	16	19	37	1.93
20477914--20478692	82	9.8	80	86	6	991	27	16	19	37	1.93
20481667--20481805	59	2.4	58	86	1	179	36	17	5	41	1.71
20481667--20481832	29	5.6	30	80	5	160	34	18	6	40	1.76
20482453--20482507	28	2.0	28	85	0	74	21	45	25	7	1.77
20482553--20482608	7	7.9	7	82	13	53	82	0	17	0	0.68
20482561--20482611	23	2.2	23	82	6	68	84	0	15	0	0.63
20482552--20482609	31	1.9	30	89	6	91	82	0	17	0	0.66
20483519--20483643	20	6.6	20	70	18	81	59	7	12	20	1.57
20483521--20483643	19	6.5	19	74	12	85	58	7	13	21	1.58
20483519--20483713	19	10.1	18	70	15	81	55	7	16	20	1.64
20483641--20483712	20	3.7	19	75	5	63	51	6	23	18	1.70
20483717--20483762	21	2.2	22	85	14	62	54	4	17	23	1.61
20483857--20483889	16	2.1	16	94	0	57	51	0	21	27	1.48
20483892--20484116	20	10.9	20	69	17	90	57	7	16	19	1.61
20483798--20483970	58	2.9	57	80	8	141	55	5	18	20	1.63
20483981--20484016	18	2.1	18	89	5	56	58	8	19	13	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20484008--20484120	24	5.2	22	77	18	112	58	7	14	19	1.60
20483981--20484114	20	6.4	21	76	16	93	56	6	17	19	1.62
20494679--20494734	21	2.7	21	91	0	85	28	32	10	28	1.90
20497123--20497280	49	3.2	48	85	6	203	24	29	14	31	1.94
20499382--20499499	41	2.9	41	84	2	139	30	20	27	21	1.98
20500398--20500612	49	4.4	49	84	0	268	24	23	17	34	1.96
20501139--20501312	85	2.0	85	96	0	321	36	16	5	41	1.72
20504518--20504561	12	3.8	12	87	3	54	70	2	4	22	1.17
20512756--20512797	17	2.6	17	81	7	52	23	30	26	19	1.98
20516214--20516302	27	3.3	27	85	0	115	23	17	15	42	1.88
20516974--20517074	49	2.0	50	92	1	168	21	22	19	35	1.96
20530380--20530413	16	2.1	17	94	5	61	58	0	14	26	1.36
20530381--20530413	17	1.9	17	93	0	57	60	0	12	27	1.32
20530570--20530615	22	2.0	22	91	4	74	52	2	2	43	1.25
20533757--20533804	20	2.5	19	83	10	62	70	6	10	12	1.32
20534417--20534528	36	3.0	37	77	7	111	48	9	22	19	1.78
20534417--20534466	19	2.5	21	75	15	52	52	14	18	16	1.76
20534397--20534476	20	4.1	20	75	15	67	48	12	18	20	1.80
20534498--20534540	17	2.3	18	84	11	52	55	6	20	16	1.64
20534506--20534542	17	2.1	18	90	5	58	54	5	24	16	1.63
20534496--20534581	20	4.4	20	73	15	72	55	9	16	18	1.67
20534471--20534758	152	1.9	151	85	6	395	49	8	20	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20534736--20534771	19	1.9	19	88	5	56	61	8	19	11	1.54
20534689--20534779	20	4.6	20	71	17	66	54	7	16	20	1.66
20535447--20535511	34	1.9	34	96	0	121	43	16	9	30	1.80
20535449--20535528	34	2.4	34	89	0	115	43	17	10	28	1.81
20536688--20536795	19	5.9	18	69	20	82	38	2	0	58	1.13
20536706--20536789	39	2.1	40	91	4	134	35	2	0	61	1.09
20536761--20536809	22	2.2	21	86	10	71	36	0	4	59	1.17
20537447--20537481	15	2.4	15	90	4	54	34	8	0	57	1.29
20538146--20538458	107	2.9	107	95	0	545	30	18	18	31	1.96
20539647--20539796	76	2.0	76	98	0	291	38	12	12	36	1.82
20566768--20566797	12	2.4	12	94	5	51	80	3	16	0	0.85
20579395--20579459	33	2.0	33	87	6	96	24	12	23	40	1.89
20582743--20582776	17	2.0	17	100	0	68	29	17	11	41	1.85
20590431--20590504	11	7.5	10	72	25	52	33	2	1	62	1.18
20590431--20590483	27	1.9	26	85	11	70	30	1	1	66	1.13
20592735--20592871	72	1.9	72	89	5	215	35	25	8	30	1.85
20601617--20601783	34	4.8	35	87	3	212	17	14	31	35	1.91
20619244--20619295	24	2.2	24	85	0	68	48	9	5	36	1.60
20624250--20624292	19	2.3	19	83	0	50	60	23	4	11	1.50
20624421--20624502	41	2.0	41	97	0	155	48	15	12	23	1.79
20625227--20625275	26	1.9	25	83	4	62	46	10	8	34	1.67
20626059--20626117	24	2.5	23	81	10	66	32	13	15	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20626917--20626958	20	2.0	21	90	4	68	16	0	26	57	1.40
20629987--20630085	23	4.3	22	82	5	90	34	23	19	23	1.97
20631437--20631522	45	1.9	45	92	0	145	33	23	17	25	1.96
20631530--20631717	50	3.8	49	77	8	182	31	27	17	23	1.96
20631528--20631717	100	1.9	100	87	3	283	31	27	16	23	1.96
20635330--20635425	45	2.1	46	80	5	106	25	18	14	41	1.88
20639371--20639413	22	2.0	22	81	9	52	46	27	11	13	1.78
20646705--20646767	18	3.3	19	77	18	60	69	1	0	28	0.97
20647313--20647399	21	3.8	21	75	20	77	56	2	0	41	1.12
20647315--20647379	27	2.3	28	81	10	78	56	3	0	40	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205