genome.fa.s19.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  139  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42240378--42240630	38	6.7	37	72	18	122	35	2	1	60	1.21
42240434--42240478	19	2.4	18	85	3	54	33	4	4	57	1.38
42240379--42240631	9	27.0	9	71	18	144	35	2	1	59	1.21
42240539--42240583	21	2.1	22	87	4	65	26	2	2	68	1.12
42240860--42240907	5	9.6	5	86	0	60	45	2	12	39	1.54
42241176--42241217	6	7.0	6	100	0	84	16	0	33	50	1.46
42243296--42243352	18	2.9	19	73	17	55	24	5	19	50	1.68
42249707--42250008	96	3.2	94	81	3	293	36	3	18	41	1.69
42249780--42250008	96	2.4	96	86	3	311	38	3	19	38	1.69
42250041--42250583	126	4.3	126	88	0	818	32	18	22	27	1.97
42256009--42256037	11	2.6	11	100	0	58	37	0	31	31	1.58
42256006--42256071	22	2.9	22	76	15	62	46	0	27	25	1.53
42257293--42257348	23	2.4	23	82	5	69	33	7	19	39	1.79
42257341--42257374	7	5.0	7	96	3	61	14	11	29	44	1.81
42261470--42261510	4	10.2	4	83	0	55	73	2	2	21	1.07
42278224--42278282	21	2.9	19	75	9	55	52	1	6	38	1.38
42283597--42283838	43	5.6	44	78	8	203	28	14	23	33	1.94
42283592--42283807	44	5.0	43	76	12	178	27	15	23	33	1.95
42283592--42283835	85	2.8	84	77	12	235	29	14	23	32	1.94
42293825--42293880	19	3.0	20	76	10	64	39	42	7	10	1.67
42293849--42293891	20	2.2	20	83	8	52	39	46	6	6	1.58
42295962--42296004	23	1.9	23	90	4	70	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42295972--42296018	18	2.5	20	86	10	71	63	0	0	36	0.94
42295973--42296082	19	5.8	19	68	11	64	60	1	2	34	1.21
42296225--42296289	19	3.4	19	75	10	60	30	9	3	56	1.46
42296294--42296375	8	9.2	8	74	17	56	28	3	1	67	1.15
42296294--42296375	17	4.6	17	79	10	74	28	3	1	67	1.15
42296346--42296412	28	2.4	28	85	5	82	29	1	1	67	1.09
42296337--42296402	8	7.5	8	77	13	51	27	3	1	68	1.13
42296298--42296394	17	5.4	17	69	13	52	28	3	1	67	1.13
42296300--42296408	28	4.0	28	72	14	75	30	2	0	66	1.12
42296294--42296459	9	18.3	9	67	16	76	30	2	1	65	1.16
42296495--42296678	99	1.9	99	82	7	234	34	10	18	35	1.86
42296798--42296829	12	2.6	12	95	5	55	34	15	0	50	1.45
42299710--42299806	34	2.9	33	77	11	108	54	2	1	42	1.19
42299811--42299860	11	4.6	11	73	11	50	44	0	2	54	1.11
42300445--42300488	13	3.3	13	78	15	54	50	15	15	18	1.79
42304917--42304955	16	2.4	16	82	0	51	33	25	5	35	1.78
42314178--42314366	51	3.7	50	79	12	224	26	17	24	30	1.97
42314594--42314625	16	2.0	16	93	0	55	59	0	15	25	1.36
42315659--42315721	31	2.0	31	96	0	117	47	11	9	31	1.71
42320941--42320975	18	1.9	18	88	0	52	17	17	0	65	1.27
42322354--42322471	3	39.3	3	100	0	236	33	0	0	66	0.92
42322450--42322670	120	1.9	121	83	8	292	31	5	6	56	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42322776--42322857	22	3.5	23	73	17	62	40	3	3	52	1.37
42322971--42323011	22	2.0	20	85	9	55	31	0	7	60	1.24
42323466--42323535	3	24.0	3	73	16	58	30	1	1	67	1.08
42324162--42324624	234	2.0	226	83	8	569	28	24	15	31	1.95
42337036--42337356	163	2.0	163	96	0	588	27	12	24	34	1.92
42339367--42339410	21	2.1	21	91	8	72	34	20	9	36	1.84
42339963--42340053	38	2.4	38	96	0	164	32	16	16	34	1.91
42340436--42340473	18	2.1	18	90	0	58	26	7	7	57	1.54
42345980--42346005	12	2.2	12	100	0	52	7	0	38	53	1.30
42351425--42351467	20	2.2	20	91	0	68	44	0	30	25	1.55
42352816--42352851	19	1.9	18	88	5	54	47	5	19	27	1.72
42357133--42357214	43	1.9	43	89	0	128	25	4	34	35	1.78
42361986--42362016	14	2.2	14	94	0	53	19	32	16	32	1.94
42368854--42368884	14	2.2	14	94	0	53	19	32	16	32	1.94
42370899--42371006	43	2.5	43	89	1	162	25	15	25	32	1.96
42373235--42373318	25	3.4	25	83	0	105	25	23	22	28	1.99
42379229--42379263	17	2.1	17	88	0	52	57	8	2	31	1.44
42393890--42393932	13	3.4	12	83	6	50	86	4	9	0	0.71
42393890--42393923	17	2.1	16	88	5	50	88	2	8	0	0.62
42398366--42398399	15	2.3	15	89	0	50	58	8	14	17	1.61
42399403--42399427	11	2.3	11	100	0	50	92	8	0	0	0.40
42401503--42401539	19	2.0	18	89	5	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42404258--42404344	37	2.3	38	84	5	106	32	42	10	14	1.80
42406522--42406568	14	3.4	14	75	0	58	34	36	12	17	1.87
42408132--42408676	88	6.2	87	82	4	519	30	25	15	27	1.96
42408132--42408676	132	4.1	131	82	6	552	30	25	15	27	1.96
42408226--42408651	220	1.9	220	88	0	638	30	26	15	27	1.96
42409167--42409203	19	2.0	18	89	5	56	67	0	0	32	0.91
42411922--42412008	37	2.3	38	84	5	106	32	42	10	14	1.80
42414186--42414232	14	3.4	14	75	0	58	34	36	12	17	1.87
42417715--42418236	44	11.7	44	67	14	178	26	21	21	30	1.98
42420648--42420676	6	4.8	6	100	0	58	0	17	0	82	0.66
42428124--42428214	27	3.4	27	82	0	128	36	24	19	19	1.95
42438835--42438876	13	3.2	13	80	10	50	16	16	16	50	1.79
42444723--42444766	22	2.0	22	100	0	88	31	9	9	50	1.65
42445191--42445280	30	2.9	30	73	10	85	40	15	2	42	1.59
42445973--42446109	61	2.2	61	90	0	220	40	3	18	37	1.68
42447017--42447071	28	2.0	29	83	16	73	69	1	3	25	1.15
42447042--42447074	17	1.9	17	93	0	57	69	3	3	24	1.16
42447389--42447448	19	3.0	20	78	11	61	28	1	1	68	1.09
42447569--42447625	17	3.3	17	80	11	71	19	3	1	75	1.04
42447526--42447599	24	3.1	24	73	11	62	22	4	2	70	1.17
42448345--42448388	3	14.7	3	100	0	88	0	0	31	68	0.90
42448387--42448418	3	10.7	3	100	0	64	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42449256--42449325	37	1.9	36	91	2	113	30	18	18	32	1.95
42451558--42451593	15	2.4	15	90	0	54	66	0	0	33	0.92
42457026--42457172	73	2.0	73	98	0	285	31	21	15	31	1.95
42459137--42459262	9	14.1	9	91	1	191	23	9	23	42	1.83
42464184--42464272	37	2.4	37	88	0	142	43	13	7	34	1.73
42464315--42464390	33	2.3	33	97	0	143	43	15	5	35	1.70
42467929--42467960	16	1.9	17	93	6	57	37	21	0	40	1.54
42468121--42468277	43	3.7	42	82	8	176	29	27	19	23	1.98
42468121--42468278	84	1.9	84	84	7	214	30	27	18	23	1.98
42471239--42471272	16	2.1	16	94	0	59	38	32	0	29	1.58
42472167--42472241	28	2.7	28	93	4	125	42	10	0	46	1.38
42472298--42472373	27	2.8	27	84	4	91	26	27	27	18	1.98
42472447--42472485	11	3.7	10	93	6	60	69	2	28	0	1.02
42472512--42472550	19	2.0	21	85	10	55	23	0	10	66	1.22
42472614--42472654	3	13.7	3	100	0	82	0	0	31	68	0.90
42472835--42472887	26	2.0	26	89	7	81	43	1	5	49	1.37
42472801--42472975	62	2.9	62	96	1	318	37	1	10	50	1.45
42472861--42472975	36	3.5	35	71	24	122	37	1	10	50	1.47
42472897--42472949	26	2.0	26	89	7	81	43	1	5	49	1.37
42473525--42473569	18	2.5	18	81	0	63	28	8	48	13	1.72
42479220--42479257	19	2.0	19	85	10	51	60	7	0	31	1.25
42479317--42479418	4	24.5	4	74	18	68	0	30	0	68	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42479264--42479370	44	2.3	48	82	10	134	0	31	0	67	0.97
42479321--42479415	31	2.8	34	81	15	124	1	30	0	68	0.97
42479318--42479384	11	5.8	12	75	12	50	0	26	0	73	0.84
42479300--42479418	39	3.1	38	78	11	145	0	31	0	67	0.97
42479367--42479425	31	1.9	31	82	6	75	3	33	0	62	1.12
42479463--42479538	27	2.8	27	83	0	98	15	27	28	27	1.96
42479594--42479665	27	2.7	27	91	6	112	44	0	11	44	1.39
42480727--42480770	19	2.3	19	88	4	61	22	4	2	70	1.17
42489642--42489919	62	4.5	62	94	2	452	19	21	30	27	1.98
42491408--42491445	19	2.0	19	94	0	67	44	5	0	50	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205