genome.fa.s19.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  194  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57464126--57464168	22	1.9	22	85	4	59	53	4	0	41	1.21
57464458--57464497	20	2.0	20	85	0	53	32	20	2	45	1.64
57465941--57465981	15	2.7	15	84	0	55	65	14	14	4	1.42
57470196--57470233	19	2.0	19	85	10	51	42	0	15	42	1.47
57470702--57470731	14	2.1	14	100	0	60	73	0	6	20	1.05
57472024--57472131	23	4.9	23	76	7	73	18	17	25	38	1.92
57472070--57472117	21	2.3	21	92	0	78	14	27	29	29	1.95
57473400--57473561	28	5.8	28	74	7	130	24	17	3	54	1.57
57480200--57480253	24	2.2	24	80	0	63	40	3	5	50	1.44
57480900--57480992	28	3.4	28	81	1	89	24	12	7	54	1.64
57480882--57481000	28	4.2	28	76	3	87	21	16	8	53	1.69
57483540--57483775	90	2.6	90	83	0	301	27	24	14	33	1.95
57483825--57483927	51	2.0	51	98	0	197	26	11	26	35	1.90
57484550--57484593	23	2.0	23	81	4	54	45	11	4	38	1.61
57485496--57485552	28	2.0	28	100	0	114	40	7	0	52	1.28
57486729--57486842	58	2.0	58	92	0	192	34	7	16	41	1.78
57487147--57487215	29	2.5	27	81	9	84	47	5	1	44	1.35
57487613--57487654	19	2.2	20	91	4	68	40	0	4	54	1.21
57498726--57499034	109	2.8	109	91	1	478	34	18	17	29	1.94
57499065--57499109	21	2.2	21	88	11	67	60	2	8	28	1.39
57501401--57501983	50	11.7	49	70	5	310	23	21	22	32	1.98
57501385--57501992	99	6.1	99	87	0	734	23	20	22	33	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57507256--57507764	254	2.0	254	95	0	921	19	30	13	36	1.91
57513973--57514398	109	3.9	109	91	0	674	35	19	15	29	1.93
57514424--57514468	21	2.2	21	88	11	67	60	2	8	28	1.39
57514584--57514626	18	2.3	18	80	11	52	69	11	4	13	1.33
57515784--57515826	20	2.2	19	84	16	52	79	13	4	2	1.00
57516810--57516841	9	3.4	9	95	4	55	28	28	21	21	1.99
57524499--57524528	15	2.0	15	93	0	51	0	0	16	83	0.65
57527565--57527595	2	15.5	2	100	0	62	0	48	0	51	1.00
57527616--57527648	15	2.1	16	88	5	50	63	3	6	27	1.32
57529136--57529198	33	1.9	33	90	0	99	33	23	19	23	1.97
57532038--57532075	13	2.9	13	96	0	67	73	0	7	18	1.06
57534007--57534031	5	5.0	5	100	0	50	20	0	0	80	0.72
57539143--57539183	22	1.9	22	90	5	66	34	7	7	51	1.58
57539252--57539286	17	2.0	18	88	5	54	60	2	0	37	1.12
57539893--57539937	19	2.4	18	81	7	54	55	2	8	33	1.43
57539901--57539946	21	2.2	22	77	14	53	45	2	6	45	1.41
57540947--57540975	10	2.9	10	100	0	58	20	20	27	31	1.98
57554026--57554058	17	1.9	18	88	11	52	42	9	0	48	1.35
57555650--57555834	101	1.8	102	84	3	257	24	16	25	33	1.96
57555646--57555832	51	3.7	50	76	4	169	24	16	26	33	1.96
57555843--57555929	45	1.9	45	92	0	147	26	16	24	33	1.95
57561120--57561258	59	2.4	58	86	7	201	38	12	29	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57561399--57561505	33	3.2	33	71	15	85	48	12	18	20	1.80
57567113--57567144	16	2.0	16	93	0	55	53	0	6	40	1.26
57568769--57568869	49	2.1	47	82	14	118	19	23	19	36	1.95
57571466--57571515	16	3.1	16	85	2	55	42	8	12	38	1.71
57571654--57571696	3	14.3	3	100	0	86	34	0	0	65	0.93
57571888--57571919	5	6.4	5	100	0	64	21	0	0	78	0.76
57571939--57571970	12	2.6	13	90	9	50	37	0	0	62	0.95
57581502--57581533	5	6.4	5	92	0	55	25	18	15	40	1.90
57593844--57594021	27	6.6	27	84	3	205	29	28	15	26	1.96
57593865--57594020	82	1.9	81	88	3	233	29	28	15	26	1.96
57606806--57606832	13	2.1	13	100	0	54	48	14	0	37	1.45
57611743--57612082	95	3.6	95	79	1	351	36	13	19	30	1.90
57611743--57612094	190	1.9	189	80	3	420	36	13	18	30	1.90
57612026--57612362	130	2.6	131	83	1	408	39	16	15	29	1.89
57616733--57616767	11	3.1	11	95	4	61	80	0	2	17	0.84
57619285--57619331	19	2.4	18	83	13	58	34	10	4	51	1.56
57642904--57642941	13	2.8	14	80	19	53	65	7	5	21	1.38
57643035--57643080	22	2.0	23	83	4	58	76	4	4	15	1.11
57644884--57644921	13	2.8	14	80	19	53	65	7	5	21	1.38
57645015--57645060	22	2.0	23	83	4	58	76	4	4	15	1.11
57645460--57645505	22	2.0	23	83	4	58	76	4	4	15	1.11
57644936--57645824	445	2.0	445	100	0	1778	57	6	7	28	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57646087--57646121	14	2.5	14	100	0	70	71	5	0	22	1.07
57646037--57646124	7	12.1	7	71	14	63	67	4	1	27	1.17
57649248--57649357	57	1.9	57	88	0	166	38	1	21	38	1.65
57651753--57651808	25	2.2	25	100	0	112	32	7	19	41	1.79
57658987--57659024	18	2.2	17	86	9	51	21	7	2	68	1.28
57663163--57663207	21	2.0	23	87	8	67	51	2	0	46	1.13
57663274--57663299	13	2.0	13	100	0	52	53	0	0	46	1.00
57666203--57666318	2	57.5	2	78	5	81	40	2	55	1	1.24
57668203--57668254	24	2.2	23	83	12	70	7	23	13	55	1.63
57668206--57668254	25	2.0	26	92	8	84	8	24	14	53	1.68
57688160--57688376	112	1.9	112	93	0	371	27	16	22	33	1.96
57688680--57689164	87	5.6	86	79	6	382	34	13	10	42	1.78
57688850--57689143	85	3.4	83	82	9	292	34	13	11	40	1.81
57689345--57689520	91	1.9	93	82	6	225	46	11	11	31	1.75
57689367--57689664	87	3.4	87	78	8	271	45	10	10	33	1.72
57689656--57689680	13	1.9	13	100	0	50	36	8	0	56	1.29
57695683--57696004	31	10.4	31	75	8	273	46	13	4	34	1.66
57695683--57696023	92	3.7	91	83	4	382	46	13	5	34	1.67
57695683--57696088	92	4.4	89	79	7	350	45	15	6	32	1.71
57695683--57696091	31	13.3	31	72	12	207	45	15	6	32	1.71
57696174--57696459	91	3.1	90	70	9	263	42	20	7	29	1.80
57696018--57696539	184	2.8	184	92	1	821	42	20	8	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57715616--57715692	3	26.3	3	80	10	61	31	1	6	61	1.30
57719164--57719228	9	7.0	9	75	17	62	35	0	0	64	0.94
57719163--57719228	29	2.4	27	82	10	80	36	0	0	63	0.95
57719167--57719214	10	4.9	10	82	12	55	35	0	0	64	0.94
57720892--57720925	17	1.9	18	88	5	52	70	2	17	8	1.25
57721314--57721347	17	2.0	17	94	0	59	38	0	5	55	1.24
57727348--57727389	20	2.1	20	86	0	57	47	0	7	45	1.30
57737401--57737438	19	2.0	20	89	5	60	36	5	2	55	1.37
57742231--57742291	29	2.2	27	83	13	72	29	4	16	49	1.66
57742782--57742822	21	2.0	21	95	0	73	21	12	12	53	1.70
57744365--57744453	25	3.6	24	74	6	79	34	23	22	19	1.96
57744486--57744554	26	2.7	25	75	16	70	33	23	24	18	1.97
57744398--57744569	25	6.9	25	70	12	77	34	20	25	19	1.96
57746211--57746258	19	2.5	19	90	6	71	39	0	0	60	0.97
57746196--57746250	27	2.0	29	85	7	78	38	0	0	61	0.96
57746226--57746267	19	2.3	19	87	4	59	42	2	0	54	1.13
57746263--57746306	19	2.2	21	84	11	58	38	0	4	56	1.20
57746263--57746333	20	3.7	20	75	16	60	39	2	5	52	1.40
57749095--57749165	27	2.4	29	79	18	83	30	29	12	26	1.93
57749116--57749174	27	2.2	27	90	0	100	33	28	10	27	1.89
57749361--57749560	41	4.9	41	87	3	251	20	29	21	29	1.98
57756614--57756675	31	2.0	31	90	0	97	35	27	8	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57756883--57757062	41	4.4	41	83	5	220	21	27	21	30	1.98
57774864--57774892	10	3.0	10	95	5	51	41	0	0	58	0.98
57775533--57775591	29	2.0	30	86	3	84	25	8	16	49	1.74
57775737--57775815	31	2.6	30	76	9	81	41	13	8	35	1.76
57776083--57776135	3	17.7	3	100	0	106	32	0	0	67	0.91
57781224--57781411	95	2.0	95	84	0	250	38	14	16	29	1.89
57783699--57783749	21	2.4	21	86	0	75	13	23	33	29	1.93
57785526--57785589	33	1.9	33	93	0	110	28	17	25	29	1.97
57785611--57785744	68	2.0	68	95	0	241	30	13	16	39	1.87
57785613--57785765	68	2.3	68	89	2	229	31	11	15	41	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205