genome.fa.s19.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  126  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37845994--37846025	15	2.2	15	94	5	57	37	3	6	53	1.42
37850231--37850272	21	2.0	21	100	0	84	61	19	4	14	1.49
37853287--37853409	57	2.2	58	85	8	173	48	16	14	20	1.80
37853621--37853669	18	2.8	17	87	3	62	32	12	6	48	1.65
37853652--37853683	15	2.2	15	94	5	57	37	3	6	53	1.42
37855700--37855742	23	1.9	23	95	4	79	48	9	11	30	1.71
37855768--37855801	16	2.1	16	89	10	52	44	0	17	38	1.49
37855768--37855805	15	2.4	17	83	16	55	44	0	18	36	1.50
37862266--37862337	36	2.0	36	94	0	126	30	13	33	22	1.93
37870896--37870936	3	13.7	3	100	0	82	31	0	0	68	0.90
37874990--37875082	35	2.6	35	83	5	107	18	12	29	39	1.88
37875808--37875855	18	2.6	18	83	6	60	50	2	4	43	1.33
37887334--37891575	47	89.6	47	99	0	8070	32	8	29	29	1.87
37891694--37891772	37	2.1	37	90	0	122	24	18	31	25	1.98
37901533--37901599	14	4.9	14	78	10	75	41	1	26	29	1.65
37901550--37901593	20	2.2	20	87	0	61	43	2	25	29	1.67
37901534--37901599	7	9.6	7	77	9	55	40	1	27	30	1.65
37902792--37902829	20	1.9	20	88	0	58	21	28	28	21	1.98
37912919--37913059	31	4.6	31	70	11	119	37	19	13	29	1.90
37913941--37914927	498	2.0	498	99	0	1956	28	19	15	35	1.93
37917768--37917813	25	1.9	23	86	8	65	73	0	8	17	1.07
37930757--37930791	10	3.4	10	88	4	52	20	5	0	74	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37933778--37934008	29	8.0	29	77	6	175	22	26	13	36	1.92
37933782--37934003	88	2.5	86	79	5	239	22	27	13	36	1.92
37942933--37942968	18	2.1	17	89	5	54	11	0	16	72	1.12
37946929--37946958	15	2.1	15	93	6	53	6	26	0	66	1.16
37948813--37948844	2	15.5	2	93	6	55	50	0	3	46	1.17
37951020--37951087	18	3.7	18	81	15	68	64	0	0	35	0.94
37951471--37951516	3	15.7	3	95	4	85	0	34	0	65	0.93
37951533--37951601	35	2.0	35	91	2	113	36	15	10	37	1.82
37959908--37959975	33	2.1	33	91	0	109	32	10	33	23	1.88
37964744--37964785	3	14.0	3	100	0	84	33	0	0	66	0.92
37965083--37965107	13	1.9	13	100	0	50	24	4	16	56	1.57
37966111--37966174	17	3.6	17	74	15	67	26	12	14	46	1.79
37966103--37966173	36	2.0	36	97	0	133	25	12	15	46	1.81
37966102--37966158	19	3.1	19	71	19	66	26	12	15	45	1.82
37966367--37966463	48	2.0	49	88	6	144	19	13	22	44	1.86
37971240--37971303	17	3.6	17	72	15	58	28	12	12	46	1.78
37971232--37971302	36	2.0	36	94	0	124	26	12	14	46	1.80
37971231--37971287	19	3.1	19	71	19	66	26	12	15	45	1.82
37986790--37986818	8	3.6	8	100	0	58	75	0	0	24	0.80
37986964--37987059	48	2.0	48	100	0	192	33	16	10	39	1.83
37988832--37988874	19	2.2	20	84	12	63	32	18	0	48	1.48
37988947--37989040	44	2.1	45	88	2	136	36	22	17	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37991787--37991814	8	3.5	8	100	0	56	75	0	0	25	0.81
38005152--38005211	27	2.2	27	81	0	75	10	15	43	31	1.79
38021959--38022135	50	3.5	50	84	4	212	35	15	12	37	1.85
38022888--38022939	24	2.1	24	82	3	59	76	1	7	13	1.07
38022902--38022962	30	2.1	30	87	6	90	72	1	9	16	1.19
38026040--38026158	50	2.3	50	80	5	132	32	16	11	38	1.85
38027810--38027872	26	2.4	26	80	17	69	34	23	7	33	1.84
38032351--38032384	13	2.8	12	86	8	50	55	8	11	23	1.63
38033397--38033510	26	4.4	26	72	4	95	33	22	8	35	1.85
38039786--38039849	31	2.1	31	100	0	128	37	3	9	50	1.51
38046692--38046726	3	11.7	3	100	0	70	31	0	0	68	0.90
38048930--38048986	19	3.0	19	77	7	62	22	19	0	57	1.40
38051629--38051721	37	2.5	38	84	5	118	30	40	13	15	1.86
38056164--38056216	6	9.0	6	91	4	81	71	16	0	11	1.13
38063372--38063557	40	4.7	40	87	5	243	24	22	27	25	1.99
38063425--38063590	80	2.1	79	85	5	219	25	20	27	25	1.99
38070180--38070470	50	5.7	50	88	2	402	26	23	30	20	1.99
38070185--38070502	150	2.1	152	85	3	424	26	22	29	21	1.99
38076479--38076768	50	5.7	50	84	2	319	27	21	29	22	1.99
38081799--38081877	21	3.8	21	72	1	61	18	21	15	44	1.87
38081825--38081919	43	2.2	42	77	3	100	17	22	15	44	1.87
38085445--38085480	15	2.4	15	100	0	72	25	11	19	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38087230--38087270	17	2.3	18	87	4	57	26	21	0	51	1.48
38089280--38089317	18	2.1	18	100	0	76	63	5	0	31	1.17
38115695--38115758	27	2.4	26	84	2	83	31	17	12	39	1.87
38121096--38121137	22	2.0	21	86	9	59	40	26	11	21	1.88
38125318--38125471	43	3.6	42	79	5	166	28	16	24	30	1.96
38139657--38139713	18	3.2	18	92	0	96	22	29	22	24	1.99
38144693--38144730	19	2.0	19	94	0	67	60	0	10	28	1.30
38144965--38144992	6	4.7	6	100	0	56	82	0	0	17	0.68
38147252--38147293	20	2.0	21	86	13	61	30	2	2	64	1.19
38150676--38150775	20	5.1	20	77	7	114	39	22	29	10	1.86
38151276--38151342	29	2.2	30	82	10	75	32	19	1	46	1.59
38151280--38151345	30	2.2	28	80	15	71	33	15	1	50	1.53
38156710--38156802	19	5.1	19	69	12	68	46	11	11	30	1.76
38156701--38156825	54	2.3	54	92	0	214	43	14	11	31	1.80
38167796--38167826	16	1.9	16	93	0	53	9	9	9	70	1.33
38186823--38186918	25	3.9	25	83	4	106	26	21	21	30	1.99
38186823--38186918	50	1.9	49	83	6	122	26	21	21	30	1.99
38190783--38190899	29	4.0	29	100	0	234	30	6	23	38	1.81
38197615--38197655	12	3.7	11	87	9	57	63	0	0	36	0.95
38202677--38202802	43	3.0	42	75	14	132	30	28	18	22	1.97
38203936--38203964	14	2.0	15	93	6	51	51	20	0	27	1.47
38214993--38215025	16	2.1	16	94	0	57	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38215089--38215145	29	2.0	29	82	6	71	52	12	7	28	1.64
38216605--38216651	17	2.8	17	83	3	60	55	17	6	21	1.64
38218423--38218480	21	2.8	21	72	0	71	41	18	24	15	1.89
38218423--38218550	42	3.0	42	80	8	136	44	17	20	17	1.87
38226499--38226545	23	2.0	23	100	0	94	21	12	23	42	1.87
38229338--38229523	20	9.3	20	72	12	96	12	26	19	41	1.87
38229330--38229521	40	4.8	41	77	3	142	12	26	20	41	1.87
38238384--38238444	19	3.2	19	88	4	88	62	1	0	36	1.05
38238386--38238458	19	4.1	18	86	8	64	56	4	0	39	1.19
38238397--38238458	18	3.5	17	76	18	56	53	4	0	41	1.22
38238454--38238490	19	2.0	18	89	5	56	43	2	2	51	1.30
38238955--38239040	44	1.9	44	84	11	113	43	8	2	46	1.46
38242678--38242707	14	2.1	15	93	6	53	76	3	6	13	1.11
38242657--38242712	17	3.5	16	80	14	62	73	3	7	16	1.20
38244382--38244432	25	2.0	25	100	0	102	33	7	27	31	1.85
38250043--38250306	40	6.7	40	89	5	360	25	27	21	25	1.99
38259824--38260085	39	6.7	40	88	7	337	24	27	22	25	2.00
38270964--38271001	10	3.5	11	86	13	53	63	2	0	34	1.09
38276627--38276651	8	3.1	8	100	0	50	28	0	36	36	1.58
38277929--38277973	17	2.6	17	92	0	63	33	20	17	28	1.95
38288605--38288789	79	2.3	82	84	7	238	25	27	22	24	2.00
38288586--38288789	40	5.1	40	82	8	238	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38298333--38298509	45	4.0	45	83	4	198	35	27	16	20	1.94
38304247--38304279	17	1.9	17	100	0	66	24	24	18	33	1.97
38304248--38304286	17	2.3	17	90	0	60	25	25	15	33	1.95
38306652--38306836	79	2.3	82	84	7	238	25	27	22	24	2.00
38306633--38306836	40	5.1	40	82	8	238	25	27	22	25	2.00
38313176--38313230	27	2.0	27	82	0	65	23	23	10	41	1.86
38313300--38313426	27	4.7	27	83	2	148	30	28	14	26	1.95
38315919--38315948	10	2.9	10	95	5	51	36	13	0	50	1.42
38322583--38322627	6	7.5	6	89	0	63	57	2	26	13	1.48
38322582--38322628	24	2.0	24	95	0	85	57	4	25	12	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205