genome.fa.s19.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  196  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58070919--58070965	16	2.7	17	83	9	60	14	8	2	74	1.15
58075919--58075954	12	2.9	12	91	4	54	80	0	16	2	0.83
58077218--58077483	50	5.4	50	68	6	191	30	21	21	25	1.98
58077195--58077540	100	3.5	99	87	2	471	31	20	21	26	1.98
58077577--58078449	45	19.4	45	84	6	1092	29	17	22	30	1.97
58078541--58078636	50	1.9	50	80	4	113	32	19	16	31	1.94
58078763--58078815	27	2.0	27	100	0	106	50	26	11	11	1.71
58078812--58079011	44	4.6	43	75	14	187	31	22	20	26	1.98
58079705--58079740	17	2.2	17	95	5	65	11	11	0	77	0.99
58084829--58084866	20	1.9	20	94	0	67	47	5	0	47	1.24
58086791--58086817	7	3.9	7	100	0	54	40	0	0	59	0.98
58087515--58087561	20	2.3	21	74	3	51	10	19	0	70	1.16
58089869--58089903	17	2.0	18	88	5	54	45	0	5	48	1.26
58095369--58095419	19	2.6	19	78	9	59	29	17	19	33	1.95
58097175--58097252	24	3.2	24	71	10	70	35	20	25	17	1.95
58097294--58097351	26	2.3	26	84	3	73	32	22	27	17	1.96
58097187--58097351	24	6.8	25	69	12	76	33	22	25	18	1.97
58099613--58099712	42	2.4	42	84	0	128	21	33	26	20	1.97
58100734--58100774	20	2.0	22	85	9	59	39	31	4	24	1.76
58101362--58101490	25	5.2	25	70	10	79	37	17	25	19	1.94
58101400--58101492	49	1.9	48	84	2	123	35	18	26	19	1.95
58101475--58101641	25	6.7	24	72	9	95	38	20	24	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58101521--58101582	24	2.5	26	84	5	83	38	22	24	14	1.91
58104983--58105017	18	2.0	18	94	5	63	31	0	0	68	0.90
58110140--58110164	3	8.3	3	100	0	50	32	0	0	68	0.90
58112176--58112219	18	2.4	18	88	11	63	25	15	11	47	1.79
58112177--58112233	18	3.3	18	70	25	52	26	15	12	45	1.82
58114736--58114779	23	2.0	23	82	13	56	84	2	6	6	0.86
58115471--58115501	15	2.0	16	93	6	55	45	19	3	32	1.66
58115779--58116337	54	11.4	52	66	19	203	31	19	21	27	1.97
58115662--58116000	143	2.4	142	86	2	464	30	19	20	29	1.97
58115790--58116194	197	2.1	197	90	1	634	30	19	21	28	1.97
58116016--58116374	44	7.6	45	66	15	183	30	21	22	26	1.99
58115975--58116419	143	3.1	143	90	1	712	29	20	23	26	1.99
58116354--58116636	133	2.1	133	87	0	413	29	19	26	25	1.98
58116628--58116684	28	2.0	28	93	0	96	36	15	33	14	1.88
58118226--58118281	6	8.7	6	76	18	51	17	5	0	76	0.96
58118227--58118292	30	2.1	34	86	11	95	18	7	0	74	1.05
58121282--58121328	4	11.8	4	95	0	76	29	0	19	51	1.47
58125580--58125631	27	1.9	27	96	0	95	38	13	0	48	1.43
58126448--58126502	16	3.4	16	75	9	58	47	1	34	16	1.57
58127247--58127288	18	2.4	17	81	14	50	16	14	0	69	1.20
58127553--58127578	11	2.4	11	100	0	52	38	0	0	61	0.96
58129073--58129892	298	2.8	293	81	8	821	36	13	8	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58134445--58134518	29	2.5	29	82	2	94	35	45	10	8	1.69
58138330--58138871	125	4.3	126	84	1	696	28	19	18	34	1.95
58138908--58139206	95	3.1	95	87	4	397	40	18	3	38	1.66
58145509--58145559	24	2.1	24	88	0	75	37	3	9	49	1.55
58149229--58149304	24	3.4	22	78	12	66	42	14	22	21	1.89
58152712--58152746	17	2.1	16	89	5	52	77	2	5	14	1.07
58153919--58153959	4	10.0	4	85	15	57	21	4	0	73	1.02
58161022--58161059	13	3.0	13	82	17	53	44	0	0	55	0.99
58161040--58161337	105	2.9	103	76	9	304	42	11	2	43	1.52
58161136--58161314	97	1.9	96	86	1	259	41	13	1	43	1.55
58161243--58161331	26	3.4	26	75	9	81	40	10	2	47	1.50
58161292--58161350	21	2.8	21	73	17	59	40	10	0	49	1.37
58161257--58161331	26	2.9	25	80	7	87	40	12	2	45	1.55
58165419--58165447	14	2.1	14	100	0	58	34	20	24	20	1.97
58170342--58170388	6	7.8	6	95	0	85	63	0	2	34	1.06
58174243--58174273	14	2.2	14	94	0	53	38	0	12	48	1.42
58174650--58174854	103	2.0	103	95	0	365	40	12	24	22	1.89
58191527--58191552	12	2.2	12	100	0	52	42	26	7	23	1.81
58195252--58195288	19	1.9	19	89	10	58	37	0	8	54	1.30
58196294--58196501	106	1.9	109	91	4	343	48	5	5	40	1.51
58211447--58211484	18	2.1	19	90	5	60	52	5	21	21	1.66
58213619--58213662	18	2.3	19	81	18	56	65	0	29	4	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58213728--58213864	66	2.0	68	83	6	172	57	2	32	6	1.39
58220641--58220676	18	2.1	16	90	10	54	33	5	0	61	1.19
58225470--58225520	22	2.4	21	80	3	57	66	13	9	9	1.44
58229607--58229641	17	2.1	17	89	10	54	62	0	2	34	1.10
58231475--58231547	35	2.0	37	87	10	98	34	1	0	64	1.02
58231509--58231559	26	2.0	24	85	7	66	31	0	1	66	1.03
58231826--58231860	17	2.0	18	94	5	63	71	5	5	17	1.25
58233243--58233271	12	2.3	13	94	5	51	51	0	27	20	1.47
58233423--58233512	26	3.3	27	84	9	112	42	11	16	30	1.83
58240919--58241612	346	2.0	346	95	0	1253	37	8	16	38	1.78
58244153--58244188	17	2.1	17	94	0	63	36	8	13	41	1.75
58249677--58249707	9	3.4	9	95	0	53	41	22	9	25	1.84
58249706--58249780	37	2.0	37	92	0	123	45	13	4	37	1.62
58249706--58249797	37	2.5	37	85	7	107	46	13	4	35	1.62
58249915--58249990	38	2.0	39	89	7	120	19	2	30	47	1.63
58249972--58249996	13	1.9	13	100	0	50	12	0	48	40	1.40
58251278--58251332	20	2.7	22	73	23	57	60	0	0	40	0.97
58251716--58251782	24	2.8	25	73	17	61	31	0	0	68	0.90
58251745--58251805	27	2.3	27	81	13	72	34	0	1	63	1.04
58252748--58252773	12	2.2	12	100	0	52	7	15	30	46	1.74
58252842--58253010	73	2.3	72	86	4	232	26	24	23	26	2.00
58253006--58254071	147	7.3	147	98	0	2050	43	14	17	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58253006--58254375	293	4.8	293	95	3	2491	43	14	17	25	1.87
58253006--58254375	440	3.2	438	95	3	2453	43	14	17	25	1.87
58253938--58254342	131	3.0	132	89	5	607	41	13	17	26	1.87
58254093--58254375	139	2.0	140	96	0	523	41	15	17	25	1.88
58254942--58254974	14	2.3	15	94	5	59	30	0	33	36	1.58
58254997--58255063	14	4.9	14	78	7	66	23	0	41	34	1.55
58255009--58255062	26	2.1	26	85	0	72	24	0	44	31	1.54
58255008--58255046	19	2.0	20	90	10	62	20	0	48	30	1.50
58255325--58255403	21	3.7	21	78	8	79	22	1	43	32	1.62
58255341--58255395	7	7.7	7	79	4	65	20	0	47	32	1.50
58255713--58255766	19	2.8	18	78	10	54	70	5	3	20	1.23
58255751--58255849	47	2.1	48	96	1	182	46	7	0	46	1.30
58256169--58256208	16	2.7	15	88	7	55	20	35	0	45	1.51
58260585--58260793	43	4.9	42	88	3	292	23	18	26	31	1.97
58261224--58261275	24	2.1	25	82	3	61	42	3	0	53	1.19
58265704--58265735	15	2.1	15	100	0	64	21	31	12	34	1.91
58265878--58265934	13	4.4	13	73	8	53	40	3	1	54	1.28
58265885--58265934	26	2.0	25	88	4	73	42	4	2	52	1.31
58266334--58266393	30	1.9	33	87	12	92	50	3	0	46	1.18
58267118--58267178	24	2.5	25	79	12	65	59	0	0	40	0.98
58267104--58267158	20	2.7	22	73	23	57	60	0	0	40	0.97
58277006--58277046	12	3.4	12	93	0	64	14	2	14	68	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58277013--58277050	12	3.2	12	92	0	58	10	5	10	73	1.23
58279963--58280076	22	5.2	22	68	12	90	50	9	1	37	1.45
58279963--58280114	44	3.5	44	95	0	259	50	10	1	37	1.48
58280414--58280480	18	3.8	18	86	7	93	62	0	13	23	1.30
58280401--58280487	35	2.5	35	89	9	133	60	0	14	24	1.34
58280576--58280627	23	2.2	24	89	3	79	53	0	23	23	1.46
58280576--58280651	12	6.5	11	78	13	64	53	0	21	25	1.45
58282164--58282291	58	2.2	58	88	2	186	50	13	8	27	1.70
58282222--58282410	90	2.1	90	88	2	272	52	12	5	28	1.62
58282222--58282432	90	2.3	90	85	1	244	54	12	5	27	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205