genome.fa.s19.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  110  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32833453--32833534	25	3.3	25	83	6	103	35	2	14	47	1.58
32833490--32833644	69	2.2	69	88	0	220	31	5	20	42	1.74
32834077--32834158	25	3.3	25	81	6	94	36	2	13	47	1.56
32834114--32834452	69	4.9	69	95	0	572	30	3	22	43	1.71
32833019--32834268	624	2.0	624	98	0	2392	33	15	16	34	1.90
32834130--32834453	34	9.4	34	75	9	280	30	4	22	43	1.72
32835256--32835296	15	2.6	16	84	11	57	51	9	0	39	1.35
32835262--32835296	15	2.2	16	95	5	63	51	11	0	37	1.38
32837066--32837103	16	2.5	15	87	8	58	89	2	7	0	0.57
32837074--32837101	8	3.5	8	100	0	56	89	0	10	0	0.49
32841312--32841595	39	7.3	39	83	3	311	11	29	31	27	1.91
32841333--32841595	117	2.2	117	85	4	352	12	30	31	25	1.92
32843785--32843832	15	3.5	15	72	21	59	50	6	0	43	1.27
32843779--32843832	26	2.0	27	92	3	92	46	7	0	46	1.31
32853799--32855094	647	2.0	647	99	0	2583	40	12	19	28	1.87
32859836--32859996	41	4.0	41	90	2	227	34	27	18	19	1.95
32860646--32860680	17	2.1	17	89	5	54	31	14	5	48	1.67
32863584--32863651	33	2.1	33	94	0	118	16	25	14	44	1.85
32863592--32863672	33	2.8	28	85	11	92	16	22	12	49	1.78
32866307--32866395	45	2.0	45	100	0	178	35	7	31	24	1.84
32867822--32867884	20	3.3	20	69	13	69	31	4	14	49	1.64
32867831--32867891	17	3.4	17	70	12	59	31	3	14	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32867826--32867900	37	2.0	37	97	0	141	32	6	16	45	1.73
32867902--32867981	9	8.9	9	88	0	115	32	10	22	35	1.87
32868347--32868380	15	2.3	15	94	0	59	14	0	2	82	0.79
32874634--32874717	25	2.8	32	67	23	83	48	5	3	41	1.45
32874753--32874777	11	2.3	11	100	0	50	20	24	0	56	1.43
32878197--32878291	44	2.2	44	82	1	120	34	22	11	31	1.90
32880975--32881055	42	1.9	42	85	5	110	58	2	4	34	1.33
32881059--32881105	19	2.6	18	80	6	58	61	4	2	31	1.27
32881883--32881939	30	1.9	30	85	7	80	66	3	5	24	1.28
32881964--32882035	29	2.5	30	81	6	85	58	1	6	33	1.33
32882235--32882339	54	1.9	54	83	11	135	35	0	4	59	1.25
32882278--32882320	19	2.2	20	87	4	61	32	0	6	60	1.23
32882297--32882359	27	2.3	26	86	7	90	39	0	3	57	1.15
32882319--32882359	20	2.0	21	86	9	59	39	0	2	58	1.11
32882313--32882367	27	2.0	27	82	6	67	41	1	1	54	1.21
32883359--32883384	4	6.5	4	100	0	52	73	0	0	26	0.84
32891158--32891185	14	2.0	14	100	0	56	50	21	7	21	1.72
32892620--32892684	26	2.5	26	87	0	85	29	26	24	20	1.99
32898569--32898618	23	2.1	24	85	3	66	20	26	22	32	1.98
32901767--32901944	27	6.6	27	84	3	205	29	28	15	26	1.96
32901788--32901943	82	1.9	81	88	3	233	29	28	15	26	1.96
32910425--32910601	27	6.5	27	78	6	144	29	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32913214--32913262	24	2.0	24	92	0	80	22	30	20	26	1.98
32930504--32930560	20	2.9	19	75	17	53	15	12	3	68	1.34
32930545--32930694	79	1.9	75	92	5	246	32	11	22	34	1.90
32931353--32931390	17	2.2	17	90	0	58	31	5	0	63	1.17
32933210--32933307	48	2.0	48	100	0	196	22	30	12	34	1.91
32935992--32936139	67	2.2	67	87	0	224	21	17	18	41	1.90
32936011--32936158	67	2.2	67	85	0	188	22	18	16	41	1.90
32939420--32939458	10	3.9	10	80	12	53	48	0	5	46	1.24
32939476--32939559	20	4.2	20	73	13	66	36	1	1	60	1.12
32942594--32942721	41	3.2	41	81	8	172	27	11	4	56	1.55
32942594--32942705	39	2.8	41	84	9	149	26	12	5	55	1.58
32943529--32943576	23	2.1	22	81	11	53	25	16	6	52	1.67
32943652--32943710	29	2.0	30	80	9	68	30	8	8	52	1.61
32944685--32944755	28	2.6	27	88	4	115	43	9	1	45	1.46
32948165--32948202	16	2.4	16	90	0	58	31	0	34	34	1.58
32948181--32948290	45	2.6	43	80	9	129	33	6	29	30	1.82
32948435--32948469	18	2.0	17	88	5	52	54	0	0	45	0.99
32948322--32948638	157	2.0	157	95	0	571	44	3	4	47	1.39
32948572--32948613	15	2.7	16	82	14	52	52	2	0	45	1.13
32948581--32948622	15	2.9	15	82	10	52	52	0	0	47	1.00
32948607--32948794	61	3.1	61	69	17	201	50	5	2	42	1.38
32948374--32948693	157	2.0	154	82	6	356	46	4	3	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32948691--32948736	15	3.0	16	78	9	60	58	0	0	41	0.98
32948572--32948867	120	2.5	120	91	5	472	50	4	2	43	1.35
32950637--32950670	15	2.3	15	90	5	52	67	23	5	2	1.26
32955514--32955574	27	2.3	27	82	5	70	18	24	21	36	1.95
32957524--32957590	29	2.4	28	82	7	75	44	2	19	32	1.66
32958898--32959158	42	6.2	42	82	1	301	30	19	19	30	1.96
32958882--32959158	84	3.3	84	88	1	387	29	19	19	30	1.97
32966008--32966051	23	1.9	23	90	0	70	4	18	2	75	1.09
32974218--32974274	30	1.9	30	89	7	89	45	5	19	29	1.72
32974441--32974777	51	6.6	51	73	5	281	26	17	24	30	1.97
32974439--32974675	101	2.3	101	80	6	257	26	16	26	30	1.97
32974441--32974777	152	2.2	152	87	3	491	26	17	24	30	1.97
32982960--32982988	15	2.0	15	93	6	51	44	0	6	48	1.29
32983151--32983183	14	2.5	14	90	9	52	24	9	27	39	1.85
32983145--32983440	51	5.8	51	76	5	278	25	16	27	30	1.97
32983147--32983430	101	2.8	100	82	3	318	25	16	26	31	1.97
32988328--32988367	21	2.0	21	85	5	55	17	7	15	60	1.57
33000363--33000897	69	7.8	69	77	1	383	18	22	20	39	1.93
33000375--33000898	205	2.5	206	79	4	518	18	22	20	38	1.93
33012637--33012680	22	2.0	22	100	0	88	50	0	4	45	1.22
33015561--33015630	36	2.0	35	91	2	113	42	5	11	40	1.65
33035917--33035959	16	2.6	17	72	20	54	20	0	2	76	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33042422--33042461	12	3.5	11	83	12	53	25	5	0	70	1.08
33044040--33044112	6	12.5	6	76	11	62	20	1	1	76	0.93
33044040--33044112	17	3.8	18	71	26	60	20	1	1	76	0.93
33053791--33053854	28	2.3	28	84	10	78	62	4	1	31	1.25
33054052--33054094	19	2.3	19	84	4	61	25	9	2	62	1.37
33054124--33054184	19	3.2	19	81	9	63	31	1	1	65	1.12
33054122--33054179	18	3.2	18	80	2	53	34	1	1	62	1.16
33054095--33054184	29	3.1	28	76	16	85	30	6	2	61	1.34
33054123--33054184	10	6.5	10	75	15	60	32	1	1	64	1.13
33054617--33054802	92	2.1	89	85	5	257	36	19	12	31	1.89
33054939--33054982	19	2.3	19	80	7	54	63	0	2	34	1.07
33054996--33055020	12	2.1	12	100	0	50	76	0	8	16	1.02
33055109--33055142	10	3.3	10	84	8	50	29	0	2	67	1.05
33055259--33055298	20	2.1	18	86	9	53	27	2	5	65	1.27
33055259--33055362	19	5.5	19	68	15	56	29	4	3	61	1.34
33056398--33056449	24	2.2	24	89	0	77	55	9	1	32	1.43
33058366--33058418	24	2.2	25	80	10	65	52	13	3	30	1.57
33095823--33095870	16	3.2	15	80	11	55	52	20	10	16	1.73
33097910--33097944	18	1.9	18	88	11	54	22	20	0	57	1.41
33097932--33098040	6	17.7	6	71	7	76	7	19	1	71	1.19
33097932--33098040	18	5.9	18	73	8	85	7	19	1	71	1.19
33098887--33098921	17	2.1	17	94	0	61	11	14	5	68	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33098889--33098927	17	2.4	16	87	8	53	10	10	5	74	1.21
33100794--33100827	14	2.4	14	100	0	68	29	0	14	55	1.40
33103762--33103789	14	2.0	14	100	0	56	35	7	0	57	1.26
33106531--33106574	21	2.0	22	86	4	63	34	9	4	52	1.54
33108181--33108218	20	2.0	20	89	5	60	50	15	7	26	1.72
33133193--33133225	17	1.9	17	88	11	50	27	27	12	33	1.92
33144883--33145079	68	2.9	68	78	3	191	29	19	13	37	1.91
33144893--33145101	68	3.1	67	78	6	163	29	20	13	37	1.90
33167069--33167408	51	6.7	50	79	6	319	30	25	15	28	1.95
33167065--33167408	102	3.4	101	85	3	417	30	25	15	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205