genome.fa.s19.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  128  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38616028--38616268	50	4.8	50	84	3	281	21	29	21	27	1.99
38623415--38623647	50	4.7	50	80	1	236	22	28	21	27	1.99
38625191--38625216	10	2.6	10	100	0	52	76	7	0	15	0.99
38630595--38630620	9	2.9	9	100	0	52	0	7	0	92	0.39
38635858--38635934	35	2.3	35	84	8	99	38	5	1	54	1.31
38639476--38639523	25	1.9	25	86	0	69	35	12	14	37	1.84
38639474--38639537	25	2.6	25	80	5	67	31	12	14	42	1.82
38641657--38641760	54	1.9	54	92	0	172	29	17	17	35	1.93
38642448--38642492	23	2.0	23	95	0	81	53	6	17	22	1.67
38642995--38643064	35	2.0	35	100	0	140	25	28	11	34	1.91
38643723--38643803	25	3.2	25	82	7	101	33	11	14	40	1.82
38647182--38647224	19	2.3	18	88	7	68	72	0	2	25	0.97
38650353--38650627	137	2.0	137	99	0	541	35	14	16	33	1.89
38651029--38651071	18	2.5	17	85	11	52	41	2	4	51	1.35
38654965--38655372	203	2.0	205	94	1	714	49	3	7	38	1.49
38656628--38656706	39	2.0	39	90	0	122	30	11	22	35	1.90
38658962--38659269	43	7.2	43	77	5	214	27	15	27	29	1.96
38659109--38659187	41	1.9	41	84	2	104	30	16	22	30	1.96
38659837--38660144	43	7.2	43	77	5	214	27	15	27	29	1.96
38659984--38660062	41	1.9	41	84	2	104	30	16	22	30	1.96
38658927--38660676	875	2.0	875	100	0	3500	36	16	17	29	1.92
38660996--38661042	24	2.0	24	95	0	85	34	10	31	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38671674--38671703	15	2.0	15	93	0	51	16	0	30	53	1.44
38671667--38671711	22	2.0	22	86	0	63	17	0	28	53	1.44
38672275--38672368	40	2.3	40	85	0	125	39	19	21	20	1.93
38675197--38675230	17	2.1	17	88	5	52	50	0	0	50	1.00
38675315--38675349	18	2.0	17	88	5	52	54	0	0	45	0.99
38675414--38675465	15	3.6	15	80	12	56	53	1	0	44	1.11
38675179--38675710	120	4.4	120	96	1	937	49	5	2	42	1.41
38675751--38675798	26	1.9	25	84	16	64	52	2	0	45	1.12
38675706--38675934	92	2.5	92	83	8	236	47	3	3	44	1.38
38678980--38679055	33	2.3	33	97	0	143	35	5	15	43	1.70
38679098--38679184	37	2.4	37	88	3	122	34	11	14	39	1.83
38681978--38682027	14	3.5	14	78	5	55	26	2	0	72	0.96
38682262--38682362	27	3.5	27	76	17	112	45	16	1	35	1.59
38682268--38682361	34	3.0	32	75	17	108	44	15	2	37	1.59
38688641--38688679	20	2.0	20	84	0	51	41	2	12	43	1.56
38702149--38702208	26	2.3	26	80	13	70	53	18	3	25	1.60
38704179--38704229	25	2.0	25	100	0	102	27	17	23	31	1.97
38709553--38709599	23	2.0	24	91	4	78	46	14	19	19	1.84
38715888--38715920	14	2.3	15	89	5	50	27	30	15	27	1.96
38732856--38732902	23	2.0	23	87	0	67	27	10	17	44	1.81
38735885--38735950	31	2.1	31	91	5	107	30	22	10	36	1.88
38761951--38761993	8	5.4	8	91	0	68	46	2	2	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38770364--38771204	50	16.5	50	67	5	410	26	22	21	28	1.99
38770364--38771193	100	8.1	100	88	2	987	26	22	22	28	1.99
38770715--38770890	59	3.1	59	65	14	172	27	22	23	27	1.99
38770639--38771167	109	5.0	109	87	6	673	27	21	23	27	1.99
38770365--38771167	418	1.9	409	85	2	1104	27	22	22	28	1.99
38772683--38772737	15	3.7	15	88	9	69	14	16	0	69	1.20
38772696--38772737	7	5.7	7	91	8	66	11	14	0	73	1.09
38772683--38772728	14	3.2	14	87	3	56	15	17	0	67	1.24
38772704--38772744	7	5.2	8	91	8	59	12	12	0	75	1.05
38772704--38772752	22	2.2	21	86	13	64	12	12	0	75	1.05
38776269--38776455	40	4.7	40	84	7	204	25	26	21	26	2.00
38778131--38778175	14	3.2	14	83	0	54	64	4	2	28	1.25
38779202--38779244	9	4.6	9	80	11	50	11	18	32	37	1.87
38779906--38780372	50	9.3	50	74	0	394	27	23	19	29	1.98
38779906--38780383	100	4.8	100	94	0	785	27	23	19	29	1.98
38793728--38793793	25	2.7	25	83	2	80	27	21	18	33	1.96
38803697--38803734	20	1.9	20	100	0	76	39	21	21	18	1.93
38804175--38804242	22	3.1	22	73	0	73	25	26	16	32	1.96
38806895--38806963	21	3.3	22	80	8	72	23	27	8	40	1.84
38818379--38818423	23	2.0	23	90	0	72	35	0	24	40	1.56
38820228--38820564	80	4.2	81	85	3	403	40	21	16	21	1.91
38820227--38820564	54	6.3	52	84	4	372	40	21	16	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38820205--38820564	27	13.4	26	79	8	321	40	20	16	21	1.91
38820716--38820792	26	3.0	26	80	0	100	20	22	22	35	1.96
38820902--38821484	28	20.8	28	88	0	842	24	21	23	31	1.98
38829506--38829549	19	2.5	17	85	7	52	50	13	0	36	1.42
38832473--38832573	49	2.1	49	85	10	136	30	27	14	26	1.95
38844003--38844035	17	2.0	17	94	5	59	30	0	54	15	1.41
38846207--38846240	16	2.1	16	94	0	59	61	8	5	23	1.47
38849861--38849889	12	2.3	13	94	5	51	20	6	6	65	1.40
38878057--38878090	18	1.9	18	88	5	52	23	35	0	41	1.55
38882290--38882328	16	2.4	16	91	8	62	46	0	2	51	1.14
38888375--38888415	16	2.4	17	88	8	57	24	39	0	36	1.56
38893089--38894099	49	20.8	48	96	1	1629	34	8	27	30	1.87
38894218--38894296	37	2.1	37	88	0	113	25	18	30	25	1.98
38903931--38903993	32	2.0	31	100	0	117	15	31	12	38	1.86
38905304--38905359	25	2.2	25	96	0	103	21	16	21	41	1.90
38906317--38906526	41	5.1	41	84	2	215	38	15	26	20	1.92
38906382--38906448	20	3.3	20	66	12	55	37	17	29	14	1.91
38906317--38906528	82	2.6	82	84	1	246	37	15	26	19	1.92
38906453--38906514	20	3.0	22	67	13	67	29	11	30	29	1.91
38912139--38912188	23	2.2	23	100	0	100	36	20	16	28	1.93
38916645--38916812	41	4.1	41	82	2	149	35	17	26	19	1.94
38916706--38916814	42	2.6	42	83	1	130	34	20	27	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38916706--38916811	21	5.1	21	67	15	67	33	19	28	17	1.95
38918164--38918205	21	2.0	21	86	9	59	19	19	9	52	1.72
38922968--38923260	50	5.8	50	86	0	388	25	21	30	21	1.99
38931464--38931679	42	5.1	42	79	9	199	24	16	25	33	1.96
38931464--38931679	85	2.5	85	79	8	226	24	16	25	33	1.96
38938150--38938203	25	2.2	25	80	12	58	38	3	1	55	1.28
38940707--38940891	40	4.6	40	82	6	124	24	20	28	27	1.99
38940760--38940893	40	3.3	40	86	2	178	23	20	29	27	1.99
38946303--38946567	103	2.6	104	91	0	424	29	29	20	20	1.98
38946895--38946959	30	2.2	29	81	8	76	30	27	6	35	1.81
38946902--38946959	30	1.9	30	85	0	80	31	24	6	37	1.82
38956611--38956654	19	2.3	19	96	0	79	25	2	9	63	1.35
38959188--38959222	18	1.9	18	100	0	70	45	28	5	20	1.73
38961983--38962028	22	2.1	22	100	0	92	41	8	8	41	1.67
38964459--38964573	25	4.6	25	76	2	115	30	19	21	28	1.97
38969966--38970030	13	5.3	12	73	12	53	70	1	9	18	1.21
38969999--38970040	12	3.6	12	83	3	50	69	4	4	21	1.26
38970475--38970511	19	1.9	19	88	0	56	16	5	0	78	0.93
38970481--38970519	19	2.1	19	90	0	60	17	5	2	74	1.12
38972081--38972388	171	1.8	171	92	0	526	24	30	23	22	1.99
38973691--38973754	24	2.7	24	85	0	83	37	21	20	20	1.94
38975798--38975916	36	3.3	36	84	4	150	47	25	10	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38986698--38986729	16	2.0	16	93	0	55	25	18	9	46	1.79
38992848--38993110	39	6.7	40	85	6	301	25	22	26	25	2.00
38992903--38993143	78	3.1	79	85	6	242	26	21	27	24	1.99
39000795--39000889	28	3.2	28	65	16	75	56	4	14	24	1.56
39000780--39000899	60	2.0	60	96	0	222	56	5	14	23	1.59
39002277--39002339	32	2.0	32	96	0	117	46	9	23	20	1.80
39003193--39003237	23	2.0	23	82	8	56	37	8	13	40	1.76
39008666--39008764	49	2.0	50	94	2	173	51	5	19	24	1.66
39011137--39011341	40	5.1	40	85	4	245	24	21	27	25	1.99
39011464--39011519	28	2.0	28	96	0	103	39	14	16	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205