genome.fa.s19.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  107  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31741054--31742067	47	21.7	47	96	1	1774	29	30	8	30	1.87
31744781--31744826	22	2.1	22	95	0	83	52	13	17	17	1.75
31744955--31744992	19	2.0	19	100	0	76	15	21	21	42	1.89
31758096--31758902	411	2.0	410	94	0	1416	31	17	20	30	1.95
31761420--31761458	7	5.4	7	90	6	60	17	51	0	30	1.46
31761440--31761477	19	2.0	19	85	10	51	21	42	0	36	1.53
31768765--31768970	48	4.3	48	79	4	202	28	18	29	24	1.98
31770013--31770058	22	2.1	22	100	0	92	41	0	28	30	1.56
31772188--31772217	14	2.1	14	93	0	51	50	10	0	40	1.36
31772666--31772931	28	9.5	28	95	0	453	27	11	26	34	1.91
31780070--31780143	29	2.6	29	86	4	96	27	16	31	25	1.96
31790019--31790212	48	4.0	48	82	4	239	26	20	30	22	1.98
31795819--31795915	51	1.9	50	89	2	149	25	26	3	44	1.69
31797359--31797402	15	2.9	15	82	0	52	45	11	22	20	1.83
31798935--31798996	27	2.3	26	86	5	88	32	14	11	41	1.81
31803732--31803839	40	2.7	40	94	0	180	22	26	20	30	1.98
31811554--31811738	79	2.3	82	84	7	238	25	27	22	24	2.00
31811535--31811738	40	5.1	40	82	8	238	25	27	22	25	2.00
31824178--31824486	152	2.0	151	88	0	456	33	10	21	34	1.88
31827986--31828037	24	2.2	24	89	0	77	57	5	7	28	1.50
31828029--31828076	23	2.1	23	84	0	60	64	12	6	16	1.46
31828102--31828174	28	2.8	25	78	13	83	58	2	8	30	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31828310--31828388	25	3.2	24	83	7	95	65	2	3	27	1.22
31828320--31828400	25	3.3	23	83	11	99	69	2	1	27	1.09
31829118--31829182	15	4.3	15	81	11	78	80	1	12	6	0.97
31829111--31829187	15	5.0	16	75	15	74	79	1	12	6	0.99
31829147--31829189	17	2.5	17	96	0	77	79	4	11	4	1.04
31829277--31829306	14	2.1	15	93	6	53	86	0	13	0	0.57
31830069--31830119	21	2.4	22	80	6	59	17	35	19	27	1.94
31840849--31840874	9	2.9	9	100	0	52	57	0	0	42	0.98
31840940--31841005	31	2.2	30	84	13	82	43	0	0	56	0.99
31846079--31846202	30	4.1	30	93	1	203	25	24	6	43	1.78
31846076--31846196	15	8.1	15	69	11	79	27	23	6	42	1.78
31849816--31850136	159	2.0	159	98	0	624	26	19	15	38	1.91
31850931--31851019	25	3.1	30	78	15	107	26	23	6	42	1.79
31851813--31852072	80	3.2	80	77	10	267	30	15	9	44	1.78
31851836--31852115	86	3.3	84	78	10	304	32	14	10	43	1.79
31863331--31863506	95	1.9	95	89	2	273	32	14	17	35	1.89
31865121--31865366	119	2.1	119	99	0	483	29	8	9	52	1.64
31865572--31865606	15	2.3	15	100	0	70	25	5	20	48	1.71
31867143--31867279	62	2.2	62	88	5	197	18	20	28	32	1.97
31868828--31868859	15	2.1	15	94	0	55	62	9	0	28	1.26
31868828--31868873	14	3.2	14	87	3	56	60	10	0	28	1.30
31869572--31869836	43	6.2	43	86	0	336	29	32	18	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31869582--31869816	129	1.8	127	89	1	371	27	33	18	20	1.96
31874963--31875154	41	4.7	41	80	2	188	31	24	21	22	1.98
31874983--31875154	82	2.1	82	85	2	229	31	25	22	20	1.98
31881265--31881320	26	2.2	26	90	0	85	33	12	12	41	1.81
31890730--31891080	47	7.4	47	95	1	603	32	7	29	29	1.86
31897193--31897230	17	2.2	18	90	4	60	71	18	2	7	1.23
31899498--31899642	40	3.7	40	81	10	172	24	27	23	24	2.00
31911432--31911663	56	4.1	56	98	0	446	22	21	9	45	1.81
31917963--31917989	5	5.4	5	100	0	54	18	0	0	81	0.69
31925938--31926115	27	6.6	27	84	3	205	29	28	15	26	1.96
31925959--31926114	82	1.9	81	88	3	233	29	28	15	26	1.96
31929421--31930084	332	2.0	332	99	0	1301	47	13	14	23	1.80
31933724--31934121	132	3.0	130	88	1	539	25	24	20	29	1.99
31934020--31934212	88	2.2	88	88	0	287	24	21	23	30	1.99
31934108--31934346	132	1.8	132	91	0	397	23	20	23	31	1.98
31949019--31949065	10	4.6	10	85	12	51	61	4	0	34	1.15
31953292--31953331	22	1.9	21	85	10	55	42	20	10	27	1.83
31953740--31953941	70	2.9	70	81	6	225	30	20	22	26	1.98
31957788--31957820	5	6.6	5	86	13	50	78	0	0	21	0.75
31958511--31958544	17	1.9	17	88	5	50	35	0	0	64	0.94
31959267--31959310	12	3.8	12	80	17	56	52	0	0	47	1.00
31959262--31959309	23	2.2	21	88	7	69	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31973696--31973727	15	2.1	15	94	0	55	62	9	0	28	1.26
31973696--31973741	14	3.2	14	87	3	56	60	10	0	28	1.30
31973757--31973794	18	2.1	18	90	0	58	52	15	2	28	1.56
31978616--31978861	42	5.9	41	77	9	171	15	21	17	45	1.86
31978616--31978829	84	2.5	84	79	5	209	16	21	16	44	1.86
31980982--31981016	18	2.0	18	88	5	54	11	28	42	17	1.83
31991117--31991321	27	7.6	27	84	4	207	27	16	27	28	1.97
31991118--31991321	109	1.9	108	84	3	275	27	16	27	28	1.97
31995055--31995175	42	2.9	41	78	7	120	19	22	15	42	1.89
31995040--31995231	41	4.6	42	76	7	167	17	22	15	44	1.86
31997359--31997491	27	5.0	26	87	5	176	32	15	12	39	1.86
32004912--32005749	54	15.5	54	99	0	1631	28	16	12	42	1.85
32006019--32006091	34	2.2	33	85	4	101	28	24	21	24	1.99
32006327--32006352	13	2.0	13	100	0	52	30	7	0	61	1.24
32012786--32012830	21	2.1	21	91	0	72	44	17	4	33	1.69
32017552--32017608	25	2.3	25	81	6	71	42	14	1	42	1.55
32018697--32018725	10	2.9	10	100	0	58	41	0	17	41	1.49
32019132--32019162	13	2.4	13	100	0	62	41	6	9	41	1.63
32023892--32023993	33	3.1	33	81	5	134	20	23	12	43	1.86
32023892--32024031	33	4.3	33	79	6	133	20	24	13	41	1.88
32024926--32025067	27	5.3	27	87	4	164	34	14	13	37	1.86
32024926--32025069	54	2.7	53	88	5	209	34	14	13	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32025343--32025419	34	2.3	33	91	6	129	29	24	20	24	1.99
32026412--32026478	34	1.9	35	90	3	109	31	8	13	46	1.74
32026427--32026466	20	2.0	20	90	0	62	27	10	12	50	1.72
32026406--32026482	14	5.0	15	71	20	52	33	9	14	42	1.77
32028021--32028085	32	2.0	32	96	0	121	46	24	16	12	1.82
32029076--32029157	27	3.1	27	61	22	66	41	13	21	23	1.88
32029076--32029178	51	2.0	51	98	0	197	42	13	23	20	1.87
32035393--32035438	19	2.5	20	79	13	53	19	32	0	47	1.50
32039816--32039843	5	5.6	5	100	0	56	0	17	0	82	0.68
32043326--32043359	9	3.8	9	96	0	59	35	0	0	64	0.94
32049152--32049223	35	2.0	36	84	12	96	12	1	22	63	1.36
32053491--32053566	22	3.2	24	67	24	63	63	14	3	18	1.46
32053619--32053664	21	2.2	21	77	14	51	56	13	0	30	1.37
32053752--32053819	21	3.3	21	73	19	79	58	2	2	35	1.28
32053742--32053830	41	2.2	41	100	0	178	60	5	2	31	1.32
32054736--32054782	22	2.2	22	96	3	87	10	29	6	53	1.60
32058483--32058586	49	2.1	49	92	0	172	30	7	13	48	1.71
32064123--32064164	6	7.2	6	91	5	50	66	19	9	4	1.38
32064131--32064164	17	2.0	17	88	0	50	70	17	5	5	1.28
32064235--32064262	14	2.0	14	100	0	56	64	0	28	7	1.20
32064238--32064282	17	2.5	18	89	7	65	68	0	24	6	1.13
32064496--32064525	15	2.0	15	100	0	60	0	13	53	33	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32078066--32078111	23	2.0	24	86	4	67	17	2	4	76	1.06
32089966--32089996	6	5.2	6	96	0	53	19	12	48	19	1.81
32092597--32092656	29	2.1	29	87	6	86	20	16	5	58	1.56
32092682--32092752	23	3.1	23	97	0	133	38	12	23	25	1.90
32096405--32096443	18	2.2	18	85	0	51	61	2	23	12	1.43
32098348--32098536	95	2.0	95	98	0	369	21	20	14	43	1.87
32099161--32099227	31	2.2	31	94	0	116	50	8	20	19	1.74
32100825--32100887	26	2.4	26	89	0	90	34	41	6	17	1.75
32101714--32101941	41	5.5	41	85	1	303	31	28	21	18	1.97
32101716--32101946	83	2.8	83	89	3	324	30	28	22	18	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205