genome.fa.s19.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  125  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37503049--37503099	23	2.2	23	82	6	59	15	19	11	52	1.73
37503142--37503180	17	2.2	18	90	4	62	51	5	10	33	1.58
37511429--37511476	21	2.2	21	82	13	62	81	4	8	6	0.98
37514515--37514578	32	2.0	32	90	0	101	37	18	9	34	1.83
37518702--37519533	277	3.0	277	92	0	1333	28	18	20	32	1.96
37525817--37525881	33	2.0	33	87	6	96	27	24	26	21	1.99
37525978--37526057	26	3.1	26	83	1	99	33	21	21	23	1.97
37535660--37535693	17	2.0	18	88	11	54	29	20	5	44	1.75
37542079--37542223	40	3.7	40	81	10	172	24	27	23	24	2.00
37557256--37557682	47	9.1	47	95	0	710	28	28	9	33	1.88
37563460--37563487	13	2.2	13	100	0	56	46	17	7	28	1.75
37565054--37565344	143	2.0	143	100	0	582	34	19	12	33	1.89
37568950--37568974	13	1.9	13	100	0	50	56	4	0	40	1.18
37571903--37571969	27	2.5	27	82	4	82	20	28	14	35	1.93
37572055--37572265	45	4.7	44	81	5	190	27	22	13	36	1.92
37572097--37572265	90	1.9	89	86	3	241	28	22	12	36	1.91
37572097--37572266	45	3.8	44	85	4	207	28	22	12	35	1.91
37575973--37576020	20	2.4	20	86	6	71	35	14	39	10	1.80
37580319--37580378	10	6.3	9	75	21	52	45	3	0	51	1.17
37581318--37581368	25	2.0	25	84	3	66	49	13	0	37	1.43
37582849--37583072	43	5.2	43	85	3	272	30	26	16	25	1.97
37582849--37583079	87	2.7	87	80	5	263	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37584115--37584526	193	2.1	192	80	8	469	42	18	9	29	1.82
37586626--37586719	7	13.1	7	70	12	57	41	37	1	20	1.59
37586627--37586719	21	4.3	22	78	5	91	41	36	1	20	1.59
37586684--37586725	15	2.9	15	89	3	59	45	33	0	21	1.52
37586750--37586801	14	3.7	14	81	0	59	50	28	1	19	1.58
37586849--37586887	19	2.0	20	85	14	55	53	0	2	43	1.14
37586954--37587021	21	3.2	22	78	12	70	35	42	2	19	1.66
37586980--37587018	21	1.9	21	94	5	71	30	46	2	20	1.64
37587379--37587571	41	4.7	41	90	1	273	30	30	19	20	1.97
37587379--37587614	82	2.9	82	84	1	269	28	29	19	22	1.98
37593804--37594300	40	12.4	40	77	2	451	20	27	17	34	1.95
37593804--37594293	120	4.1	119	80	3	509	21	27	17	34	1.95
37598901--37599174	141	1.9	141	87	2	399	30	12	23	33	1.92
37604659--37604967	120	2.6	120	85	5	410	24	27	21	25	1.99
37604623--37604914	40	7.3	40	94	1	412	24	27	21	26	1.99
37604899--37604976	40	1.9	41	82	10	97	26	28	20	24	1.99
37612727--37613109	40	9.6	40	92	2	565	27	27	20	24	1.99
37618372--37618415	21	2.1	21	91	8	72	15	11	40	31	1.83
37620963--37620997	17	2.1	17	100	0	70	45	11	5	37	1.64
37624668--37624702	17	2.0	18	88	5	54	54	11	0	34	1.37
37628024--37628203	28	6.6	27	91	3	279	30	28	12	27	1.93
37628024--37628203	55	3.3	55	94	1	299	30	28	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37628024--37628203	83	2.2	82	92	1	297	30	28	12	27	1.93
37636340--37636436	27	3.6	27	90	2	140	29	28	13	27	1.94
37641533--37641747	109	2.0	110	97	0	405	41	11	13	33	1.80
37643322--37643366	21	2.1	22	84	12	58	71	6	6	15	1.29
37644419--37644451	17	1.9	17	93	0	57	45	21	21	12	1.84
37646388--37646493	41	2.6	41	95	0	185	31	25	21	21	1.98
37652040--37652185	74	2.0	74	95	0	265	22	32	12	32	1.91
37653628--37653696	20	3.2	20	77	18	84	43	14	5	36	1.70
37653608--37653696	45	2.0	45	97	0	169	43	16	5	33	1.72
37653608--37653681	25	3.2	25	75	18	95	44	17	6	31	1.75
37655166--37655204	18	2.2	17	86	13	53	33	0	20	46	1.51
37655431--37655504	23	3.3	23	82	3	105	18	21	25	33	1.96
37655432--37655497	22	3.0	22	86	2	96	18	22	25	33	1.97
37657038--37657070	11	3.0	11	95	0	57	51	0	0	48	1.00
37658214--37658390	34	5.1	34	79	4	185	41	15	21	22	1.90
37658226--37658390	69	2.4	69	89	2	251	40	16	21	21	1.91
37662580--37662653	37	2.0	37	94	0	130	28	21	13	36	1.91
37666594--37666645	24	2.1	25	89	10	81	1	9	5	82	0.90
37668849--37669111	40	6.6	40	88	3	325	24	20	27	26	1.99
37668888--37669146	80	3.3	80	85	3	256	25	20	27	25	1.99
37676802--37677064	40	6.6	40	88	3	325	24	20	27	26	1.99
37676841--37677099	80	3.3	80	85	3	256	25	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37680595--37680697	54	1.9	54	83	0	134	27	20	30	22	1.98
37686042--37686084	19	2.2	19	87	4	59	55	2	0	41	1.12
37686040--37686088	16	2.8	17	82	17	57	57	2	0	40	1.10
37688699--37688749	7	7.3	7	93	0	66	15	60	0	23	1.35
37688707--37688762	14	3.9	14	88	4	76	14	60	0	25	1.34
37699257--37699299	21	2.0	21	100	0	86	27	32	13	25	1.94
37699492--37699613	43	2.8	43	87	0	163	38	25	14	21	1.92
37701045--37701227	40	4.6	39	82	4	188	26	27	20	25	1.99
37707394--37707571	27	6.6	27	84	3	205	29	28	15	26	1.96
37707415--37707570	82	1.9	81	88	3	233	29	28	15	26	1.96
37709349--37709483	43	3.1	43	78	6	130	37	20	13	28	1.90
37711915--37712185	43	6.3	43	79	3	224	40	20	12	26	1.88
37711923--37712107	86	2.2	86	87	0	262	41	21	12	24	1.88
37711915--37712185	129	2.1	128	83	5	332	40	20	12	26	1.88
37711923--37712134	86	2.5	86	84	0	253	41	21	13	24	1.89
37713276--37713341	33	2.0	33	100	0	132	36	27	9	27	1.87
37713285--37713342	19	3.3	19	63	22	54	36	31	8	24	1.85
37716823--37716855	17	1.9	17	100	0	66	12	12	15	60	1.59
37722075--37722128	12	4.7	12	78	15	60	74	1	0	24	0.92
37722077--37722117	4	10.5	4	80	15	50	73	2	0	24	0.96
37722070--37722128	15	3.9	15	77	18	61	74	1	0	23	0.91
37722070--37722128	19	3.2	20	79	13	72	74	1	0	23	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37724684--37724852	94	1.8	92	88	2	257	30	22	15	31	1.95
37724691--37724918	92	2.5	93	82	9	236	29	21	17	31	1.96
37731680--37732539	430	2.0	430	100	0	1720	40	23	10	26	1.86
37734153--37734190	19	2.0	20	84	5	51	44	23	10	21	1.83
37735257--37735291	18	1.9	18	88	0	52	57	22	0	20	1.41
37748532--37748724	50	3.7	50	77	6	199	23	29	21	26	1.99
37749461--37749541	30	2.7	30	92	0	117	32	19	20	27	1.97
37754815--37754849	3	11.7	3	93	0	61	37	0	28	34	1.58
37755980--37756050	9	7.3	9	75	12	61	53	1	1	43	1.18
37755986--37756046	20	3.0	20	80	7	61	49	1	1	47	1.21
37755969--37756050	30	2.7	30	88	3	112	52	1	3	42	1.26
37759940--37760004	18	3.8	18	86	8	91	44	0	1	53	1.09
37760232--37760269	11	3.6	11	82	10	53	36	0	2	60	1.11
37760278--37760319	16	2.4	18	84	11	61	14	9	0	76	1.02
37765419--37765516	39	2.5	39	81	4	110	38	5	9	46	1.58
37771394--37771455	30	2.1	30	96	0	115	48	12	4	33	1.63
37777439--37777467	14	2.1	14	100	0	58	20	34	6	37	1.80
37782180--37782302	50	2.5	50	82	0	147	33	23	17	26	1.96
37788236--37788269	16	2.1	16	88	0	50	35	11	11	41	1.78
37794115--37794261	73	2.0	73	94	0	258	42	21	12	23	1.87
37794644--37794929	146	2.0	144	88	2	421	32	19	9	38	1.84
37797846--37798109	40	6.7	40	89	5	360	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37808193--37808238	24	1.9	24	91	8	76	39	21	6	32	1.79
37811454--37811487	17	2.0	17	100	0	68	23	17	5	52	1.66
37815802--37815979	27	6.6	27	83	3	205	26	15	28	29	1.96
37815803--37815958	82	1.9	81	88	3	233	26	15	28	29	1.96
37815799--37815979	82	2.2	81	83	2	229	27	15	27	29	1.96
37838426--37838721	39	7.6	39	85	3	400	44	21	3	31	1.68
37838432--37838721	117	2.5	117	91	0	474	44	21	3	30	1.69
37843944--37843983	18	2.2	18	100	0	80	57	22	0	20	1.41
37845624--37845749	57	2.2	57	84	5	166	45	13	18	23	1.84
37845967--37846011	18	2.5	18	85	7	56	33	13	6	46	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205