genome.fa.s19.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  117  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35202027--35202073	14	3.3	14	77	16	60	46	14	4	34	1.64
35202151--35202201	20	2.6	19	81	9	66	43	19	3	33	1.70
35202378--35202458	23	3.5	23	75	9	76	37	18	23	20	1.94
35202755--35203092	125	2.7	125	88	1	516	29	21	20	28	1.98
35202948--35203583	166	3.9	163	80	8	699	34	19	19	26	1.96
35203686--35203761	40	1.9	39	84	7	100	26	25	15	32	1.95
35204204--35204246	13	3.2	13	77	6	50	16	2	27	53	1.55
35204268--35204327	22	2.8	22	78	12	70	18	6	43	31	1.76
35204325--35204376	7	7.1	7	77	14	52	30	1	28	38	1.68
35208451--35208500	21	2.4	21	93	0	82	34	18	46	2	1.60
35208855--35209090	43	5.4	42	83	9	265	30	16	27	25	1.97
35208957--35209055	49	2.0	49	96	0	180	28	15	29	27	1.96
35208914--35209091	92	1.9	93	90	2	288	27	15	29	28	1.96
35209009--35209107	43	2.3	42	85	1	117	27	17	28	27	1.97
35210633--35210695	30	2.1	30	82	5	74	28	19	23	28	1.98
35210588--35210738	66	2.3	66	87	0	221	27	17	25	29	1.98
35210601--35210734	36	3.9	35	72	16	127	26	17	25	29	1.98
35220834--35220899	22	3.0	22	86	0	78	19	19	33	27	1.96
35220941--35221071	27	4.9	27	71	5	88	34	13	25	25	1.93
35226616--35226727	42	2.7	42	81	2	118	30	15	22	32	1.94
35235053--35235119	30	2.2	30	94	5	118	20	22	34	22	1.97
35239081--35239157	6	13.5	6	73	13	65	76	3	2	16	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35239056--35239112	14	3.9	15	75	13	57	75	7	0	17	1.02
35239049--35239117	27	2.5	27	81	11	79	73	5	0	20	1.03
35239056--35239158	40	2.5	41	76	10	104	73	4	1	19	1.11
35239081--35239157	24	3.4	22	79	13	86	76	3	2	16	1.05
35239081--35239158	16	4.6	16	77	15	77	75	3	2	17	1.07
35239055--35239157	12	8.7	11	68	21	66	74	4	1	18	1.09
35239105--35239163	17	3.5	17	88	6	68	72	1	5	20	1.12
35239612--35239654	22	2.0	22	86	4	61	13	9	6	69	1.35
35242807--35242918	33	3.4	33	83	2	136	48	15	19	16	1.82
35242807--35242937	33	4.0	33	79	9	133	48	16	18	17	1.82
35242807--35242937	66	2.0	65	83	5	165	48	16	18	17	1.82
35242831--35242979	66	2.3	65	80	6	149	48	15	18	17	1.82
35251051--35251112	30	2.1	29	82	8	72	25	25	14	33	1.94
35251048--35251445	29	13.5	29	76	6	232	24	25	12	37	1.91
35251141--35251395	87	2.9	87	79	8	293	24	26	12	36	1.91
35270312--35270445	72	1.9	70	86	6	191	42	2	4	50	1.38
35273466--35273518	23	2.4	22	76	20	56	9	18	1	69	1.25
35284445--35284746	43	6.9	43	82	7	365	25	27	17	30	1.97
35284445--35284746	86	3.4	86	87	2	415	25	27	17	30	1.97
35285120--35285356	9	27.7	9	66	19	80	30	2	16	49	1.59
35285148--35285444	16	18.1	16	66	21	93	30	2	17	49	1.59
35285163--35285269	25	4.2	25	79	11	126	30	1	16	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35285241--35285328	34	2.6	36	76	10	103	30	2	14	52	1.54
35285427--35285470	23	1.9	23	90	9	72	29	0	22	47	1.51
35285481--35285534	17	3.1	18	74	17	60	59	3	0	37	1.15
35285715--35285854	21	6.5	21	75	16	101	51	1	0	46	1.15
35285721--35285788	31	2.2	30	80	12	84	52	0	1	45	1.09
35286983--35287023	19	2.2	19	95	0	73	41	9	4	43	1.59
35287829--35287861	14	2.4	14	100	0	66	21	36	6	36	1.78
35288094--35288151	28	2.1	28	96	0	107	34	25	6	32	1.83
35288331--35288372	18	2.2	20	87	8	61	2	30	9	57	1.44
35289047--35289122	39	1.9	40	83	5	100	32	19	14	32	1.92
35296606--35296642	17	2.1	18	90	5	58	29	0	2	67	1.04
35304927--35304976	24	2.2	23	89	7	75	36	6	32	26	1.81
35310255--35310297	19	2.4	18	84	7	52	53	0	0	46	1.00
35311218--35311247	14	2.1	14	93	0	51	43	0	0	56	0.99
35320030--35320353	55	5.9	55	84	1	409	28	16	26	28	1.97
35320034--35320370	110	3.1	110	85	4	450	27	16	27	28	1.97
35322469--35322525	30	1.9	30	82	7	71	52	3	7	36	1.46
35325861--35325895	4	9.0	4	87	6	54	22	0	0	77	0.78
35330464--35330513	25	2.1	23	85	14	66	48	0	2	50	1.12
35333623--35333662	20	2.0	20	100	0	80	30	10	15	45	1.78
35333751--35333793	20	2.2	20	86	0	59	46	4	2	46	1.36
35335795--35335831	12	3.2	12	84	7	58	43	0	56	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35335797--35335831	17	2.1	17	94	0	61	42	0	57	0	0.99
35335797--35335830	6	5.8	6	89	6	52	44	0	55	0	0.99
35337272--35337416	49	2.9	49	82	6	184	22	27	20	28	1.99
35345043--35345149	50	2.1	50	82	3	135	21	31	19	27	1.97
35361921--35362098	27	6.6	27	83	3	205	26	15	28	29	1.96
35361922--35362077	82	1.9	81	88	3	233	26	15	28	29	1.96
35361918--35362098	82	2.2	81	83	2	229	27	15	27	29	1.96
35380688--35380738	20	2.5	20	84	6	59	25	15	19	39	1.91
35382721--35382854	6	22.3	6	92	0	205	1	3	48	46	1.29
35382721--35382854	10	13.4	10	92	0	205	1	3	48	46	1.29
35382721--35382854	4	33.5	4	93	0	205	1	3	48	46	1.29
35390633--35390678	24	1.9	24	86	0	65	45	17	26	10	1.81
35392931--35392968	9	4.0	10	86	13	53	84	10	5	0	0.77
35392935--35392979	8	5.5	8	84	12	56	88	8	2	0	0.58
35392932--35392974	18	2.4	18	92	3	70	88	9	2	0	0.60
35392934--35392979	10	4.7	10	89	2	58	89	8	2	0	0.57
35394217--35394860	132	4.9	132	91	1	947	28	17	23	29	1.97
35394463--35394776	44	7.1	44	66	7	109	26	18	24	29	1.98
35394636--35394821	44	4.2	45	67	8	105	25	19	24	31	1.98
35406597--35406774	27	6.6	27	84	3	205	29	28	15	26	1.96
35406618--35406773	82	1.9	81	88	3	233	29	28	15	26	1.96
35414660--35414837	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35414681--35414836	82	1.9	81	88	3	233	29	28	15	26	1.96
35425655--35425897	103	2.4	102	89	6	361	39	4	10	45	1.57
35425638--35425897	104	2.5	102	87	7	368	40	4	10	45	1.58
35427207--35427236	14	2.1	14	100	0	60	56	6	13	23	1.60
35430800--35430838	20	2.0	20	89	0	60	28	30	0	41	1.57
35442799--35442858	30	2.0	30	90	0	93	35	11	20	33	1.88
35451505--35451530	5	5.2	5	100	0	52	0	38	0	61	0.96
35451877--35451934	30	1.9	31	85	3	82	31	20	3	44	1.68
35452099--35452142	23	1.9	23	95	0	79	27	0	25	47	1.52
35452161--35452542	42	9.1	42	87	1	516	21	18	22	37	1.94
35453723--35453767	20	2.2	20	84	7	56	48	8	8	33	1.65
35455020--35455196	94	1.9	93	84	11	238	40	3	10	45	1.56
35454837--35455146	144	2.2	144	84	6	400	45	3	9	41	1.53
35455112--35455157	20	2.2	21	84	3	58	39	0	10	50	1.38
35455111--35455158	21	2.3	22	78	10	55	37	0	10	52	1.36
35455046--35455246	94	2.1	94	79	7	221	44	3	10	40	1.57
35457518--35457575	27	2.1	27	87	0	80	43	20	18	17	1.89
35464242--35464436	98	2.0	98	93	0	336	17	11	13	56	1.66
35466495--35466527	5	6.8	5	96	3	59	42	0	0	57	0.98
35466577--35466607	15	2.0	16	93	6	55	67	0	32	0	0.91
35469215--35469261	24	2.0	23	83	4	58	55	2	2	40	1.24
35473054--35473079	8	3.2	8	100	0	52	61	0	11	26	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35478035--35478225	26	7.3	26	85	1	240	41	20	13	24	1.88
35478588--35478671	33	2.8	28	70	16	69	21	20	22	35	1.96
35478597--35478692	33	2.9	32	86	6	120	20	19	21	37	1.94
35483375--35483410	18	2.0	18	94	0	63	22	13	11	52	1.72
35483382--35483417	18	2.1	18	89	5	56	22	22	11	44	1.84
35484178--35484204	10	2.7	10	100	0	54	40	14	0	44	1.46
35484774--35484799	8	3.2	8	100	0	52	26	0	34	38	1.57
35486617--35486649	13	2.6	13	90	4	50	63	0	3	33	1.10
35487599--35487708	40	2.7	42	83	6	129	25	24	18	31	1.97
35490127--35490165	20	2.0	20	85	5	53	25	2	0	71	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205