genome.fa.s19.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  149  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45243729--45243765	19	2.0	18	89	5	56	29	2	2	64	1.21
45245315--45245348	15	2.2	16	94	5	61	29	0	5	64	1.17
45245394--45245430	15	2.4	15	90	4	56	35	0	0	64	0.94
45245264--45245419	80	2.0	80	91	3	253	37	2	8	51	1.46
45248477--45248947	95	5.0	95	71	9	377	29	21	16	32	1.95
45248673--45248782	44	2.5	44	80	2	114	27	27	17	28	1.97
45248917--45248973	23	2.5	23	100	0	114	38	10	19	31	1.86
45248805--45249099	162	1.8	163	86	3	434	29	21	17	30	1.97
45261595--45261668	22	3.3	22	75	14	87	63	6	4	25	1.37
45264921--45265004	41	2.0	41	93	0	141	35	8	19	36	1.82
45266864--45266894	6	5.2	6	100	0	62	16	0	0	83	0.64
45268318--45268378	30	2.0	30	83	0	77	19	3	4	72	1.18
45271744--45271805	9	7.6	8	84	13	74	83	9	0	6	0.79
45271744--45271802	17	3.6	17	80	17	79	83	10	0	6	0.82
45271764--45271810	14	3.3	15	91	5	71	85	12	0	2	0.70
45271746--45271808	23	2.7	23	95	2	108	82	11	0	6	0.83
45271746--45271805	32	1.9	31	93	3	102	83	10	0	6	0.81
45272256--45272305	14	3.8	13	79	10	57	84	6	10	0	0.79
45272255--45272300	20	2.2	21	88	3	67	84	6	8	0	0.77
45272253--45272316	6	10.2	6	84	14	67	82	4	12	0	0.81
45272253--45272316	26	2.5	26	87	7	87	82	4	12	0	0.81
45272253--45272316	13	5.1	12	82	14	67	82	4	12	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45273403--45273728	46	7.3	46	63	15	153	26	19	24	29	1.99
45273403--45274068	134	5.0	131	90	3	706	27	19	25	28	1.99
45273802--45273983	44	4.2	44	64	16	108	29	19	24	25	1.99
45273714--45274104	130	3.0	129	92	3	631	27	19	25	26	1.99
45273900--45274068	43	3.9	43	66	7	117	27	18	27	26	1.98
45276678--45276725	15	3.1	15	80	14	53	58	2	12	27	1.46
45280076--45280110	15	2.2	16	95	5	63	65	0	11	22	1.24
45282167--45282206	18	2.1	20	86	9	57	32	5	2	60	1.32
45283614--45283762	18	8.1	19	73	11	96	45	10	12	32	1.74
45283637--45283704	17	3.9	17	70	14	59	48	10	14	26	1.76
45283621--45283722	36	2.8	35	81	11	109	48	10	12	28	1.75
45283729--45283767	18	2.2	18	86	4	53	53	10	12	23	1.69
45284195--45284259	1	65.0	1	78	0	67	0	10	0	89	0.49
45284171--45284257	18	4.5	19	81	12	99	0	14	0	85	0.61
45284195--45284257	9	6.7	9	84	15	83	0	11	0	88	0.50
45284174--45284259	38	2.2	40	89	6	131	0	13	0	86	0.58
45284171--45284258	29	3.1	29	87	6	117	0	14	0	85	0.60
45284174--45284259	19	4.3	20	79	15	99	0	13	0	86	0.58
45284175--45284258	28	2.9	28	86	8	107	0	14	0	85	0.59
45284536--45284574	17	2.2	18	86	4	53	2	12	0	84	0.72
45284543--45284593	15	3.6	14	86	10	68	0	19	0	80	0.71
45284541--45284596	12	4.9	12	80	10	64	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45284543--45284596	9	6.2	9	79	16	53	0	20	0	79	0.73
45284555--45284597	15	3.0	15	93	6	72	0	23	0	76	0.78
45284961--45285099	29	4.8	29	78	11	167	45	5	17	31	1.72
45284961--45285099	60	2.4	58	83	10	185	45	5	17	31	1.72
45288210--45288453	46	5.6	45	84	10	312	34	14	22	28	1.94
45288246--45288318	36	2.0	36	94	0	128	36	13	20	28	1.91
45288210--45288453	82	2.8	85	84	11	320	34	14	22	28	1.94
45290399--45290516	59	2.0	60	83	8	152	30	20	5	44	1.73
45290402--45290531	30	4.4	29	80	9	138	30	20	5	43	1.74
45292976--45293059	16	5.2	16	92	0	132	27	0	33	39	1.57
45293295--45293329	18	2.0	17	88	5	52	54	0	0	45	0.99
45293278--45293496	120	1.8	120	95	0	402	47	5	1	44	1.38
45293415--45293449	18	2.0	17	88	5	52	54	0	0	45	0.99
45293310--45293496	61	3.1	61	67	11	159	47	6	2	44	1.40
45295473--45295739	86	3.1	86	99	0	527	47	7	4	40	1.53
45298420--45298538	43	2.8	43	90	0	184	35	27	13	23	1.92
45298656--45298801	31	4.7	31	85	0	186	43	16	8	31	1.79
45298656--45298821	62	2.7	62	82	4	167	43	16	7	31	1.76
45298662--45298836	93	1.9	93	79	4	201	44	14	7	33	1.73
45309343--45309377	16	2.2	16	89	0	52	31	31	5	31	1.81
45312831--45312876	24	1.9	24	82	8	58	26	6	2	65	1.28
45313370--45313448	10	8.2	9	74	14	61	63	2	1	32	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45313283--45313449	28	6.0	27	68	15	81	61	2	0	35	1.16
45313433--45313457	10	2.5	10	100	0	50	56	0	0	44	0.99
45313651--45313770	37	3.2	37	74	6	127	33	0	2	63	1.14
45313653--45313778	9	13.7	9	69	11	76	33	0	3	62	1.16
45314454--45314497	21	2.0	21	86	4	61	61	2	13	22	1.43
45315005--45315058	23	2.3	23	90	6	83	7	3	14	74	1.18
45317187--45317220	17	1.9	18	88	5	52	50	8	23	17	1.74
45318699--45318731	9	3.7	9	91	0	57	24	9	21	45	1.80
45327046--45327087	14	2.9	14	82	3	57	50	0	19	30	1.48
45351760--45351785	11	2.4	11	100	0	52	92	0	7	0	0.39
45356992--45357027	18	1.9	18	88	5	54	58	2	0	38	1.13
45357002--45357067	30	2.2	29	82	15	80	56	0	0	43	0.99
45367199--45367243	16	2.8	16	77	12	56	62	0	0	37	0.96
45367894--45367937	20	2.2	20	88	11	65	50	0	2	47	1.13
45367893--45367935	19	2.3	18	81	18	52	48	0	2	48	1.14
45368424--45368483	30	1.9	32	87	12	90	46	0	3	50	1.18
45380304--45380360	28	2.0	29	82	6	71	28	5	8	57	1.50
45383466--45383506	20	2.0	20	85	0	55	29	2	0	68	1.03
45384260--45384287	14	2.0	14	100	0	56	14	14	0	71	1.15
45384881--45384934	3	17.3	3	81	14	56	35	1	3	59	1.26
45385007--45385079	25	2.8	25	74	17	69	30	5	0	64	1.16
45390985--45391438	44	10.3	44	73	9	345	30	16	24	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45390959--45391322	89	4.1	89	89	4	499	29	17	23	29	1.97
45393069--45393119	3	16.3	3	80	15	59	35	1	1	60	1.19
45399642--45399675	12	2.8	12	95	4	59	64	0	2	32	1.08
45401322--45401441	44	2.7	44	89	0	177	30	22	19	27	1.98
45401319--45402015	143	4.9	143	84	1	862	27	21	19	31	1.98
45406080--45406119	19	2.1	19	86	9	55	42	12	22	22	1.87
45408141--45408185	4	12.0	4	77	13	51	75	0	2	22	0.91
45408135--45408187	18	3.2	17	80	12	58	77	0	3	18	0.92
45410202--45410276	31	2.5	30	82	6	80	37	10	12	40	1.77
45414474--45414508	16	2.2	16	89	0	52	54	0	5	40	1.24
45419205--45419274	22	3.0	22	67	18	52	31	7	2	58	1.40
45428092--45428127	5	7.0	5	87	6	54	77	0	2	19	0.88
45428092--45428126	16	2.2	16	94	0	61	80	0	2	17	0.84
45437379--45437414	5	7.0	5	87	6	54	77	0	2	19	0.88
45437379--45437413	16	2.2	16	94	0	61	80	0	2	17	0.84
45443686--45443733	9	5.4	9	78	14	55	29	2	2	66	1.14
45443686--45443737	17	2.9	19	75	13	56	30	3	1	63	1.23
45443873--45443910	19	2.1	17	90	9	58	31	2	0	65	1.06
45444806--45444845	20	2.0	20	100	0	80	35	10	10	45	1.71
45445039--45445178	42	3.3	42	88	4	210	25	21	20	33	1.97
45445184--45445388	42	4.8	41	76	11	173	28	20	20	30	1.98
45445087--45445275	97	1.9	97	82	4	238	29	19	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45445045--45445315	139	1.9	139	80	0	308	27	19	21	31	1.97
45445763--45445802	21	1.9	21	89	0	62	2	50	17	30	1.59
45447698--45448107	127	3.3	125	68	14	327	35	19	14	30	1.92
45447615--45448113	251	2.0	251	92	0	829	33	20	15	30	1.93
45448483--45448514	7	4.6	7	92	0	55	43	37	0	18	1.51
45448789--45448877	39	2.3	39	82	7	110	51	19	2	26	1.58
45451540--45451573	16	2.1	17	88	5	52	44	8	2	44	1.50
45453163--45453194	7	4.6	7	92	0	55	43	37	0	18	1.51
45453469--45453557	39	2.3	39	82	7	110	51	19	2	26	1.58
45456220--45456253	16	2.1	17	88	5	52	44	8	2	44	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205